Guide to the Human Genome
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Name: LOC100129857 Sequence: fasta or formatted (196aa) NCBI GI: 239742436
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {196aa} PREDICTED: hypothetical protein
alt prot {196aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.1          6           1
 C cysteine            1.5          3           1
 D aspartate           2.6          5           1
 E glutamate           7.1         14           1
 F phenylalanine       5.1         10           1
 G glycine             7.1         14           1
 H histidine           1.0          2           1
 I isoleucine          1.0          2           1
 K lysine              0.5          1           1
 L leucine            16.3         32           2
 M methionine          0.5          1           1
 N asparagine          1.5          3           1
 P proline            17.9         35           2
 Q glutamine           2.6          5           1
 R arginine            2.6          5           2
 S serine             10.2         20           2
 T threonine           4.6          9           1
 V valine             13.3         26           4
 W tryptophan          1.0          2           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129857          1.000   PREDICTED: hypothetical protein 
LOC100129857          0.997   PREDICTED: hypothetical protein 
PRX                   0.091   periaxin isoform 2 
FMN2                  0.080   formin 2 
SON                   0.067   SON DNA-binding protein isoform F 
SON                   0.067   SON DNA-binding protein isoform B 
SOBP                  0.045   sine oculis binding protein homolog 
RBM16                 0.043   RNA-binding motif protein 16 
TTN                   0.040   titin isoform N2-A 
KIAA0754              0.040   hypothetical protein LOC643314 
ZFHX4                 0.040   zinc finger homeodomain 4 
RBM42                 0.037   RNA binding motif protein 42 
LOC647546             0.037   PREDICTED: hypothetical protein 
SETD1B                0.037   SET domain containing 1B 
YLPM1                 0.037   YLP motif containing 1 
GORASP2               0.032   golgi reassembly stacking protein 2 
INF2                  0.032   inverted formin 2 isoform 2 
INF2                  0.032   inverted formin 2 isoform 1 
WIPF3                 0.032   WAS/WASL interacting protein family, member 3 [Homo...
ZBTB45                0.032   zinc finger and BTB domain containing 45 
RBM12                 0.029   RNA binding motif protein 12 
RBM12                 0.029   RNA binding motif protein 12 
COL14A1               0.029   collagen, type XIV, alpha 1 
SEC16A                0.027   SEC16 homolog A 
FMNL3                 0.027   formin-like 3 isoform 2 
FMNL3                 0.027   formin-like 3 isoform 1 
PPRC1                 0.024   peroxisome proliferator-activated receptor gamma, co...
MAPK1IP1L             0.024   MAPK-interacting and spindle-stabilizing protein [Ho...
RFX5                  0.024   regulatory factor X, 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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