Guide to the Human Genome
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Name: ZNF518B Sequence: fasta or formatted (1074aa) NCBI GI: 58761535
Description:

zinc finger protein 518B

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         59           2
 C cysteine            2.4         26           1
 D aspartate           3.4         37           2
 E glutamate           6.0         64           2
 F phenylalanine       2.8         30           1
 G glycine             5.6         60           2
 H histidine           3.3         35           2
 I isoleucine          4.5         48           2
 K lysine              9.1         98           2
 L leucine             8.1         87           2
 M methionine          1.6         17           2
 N asparagine          6.5         70           2
 P proline             5.8         62           2
 Q glutamine           5.7         61           2
 R arginine            5.0         54           2
 S serine             10.1        109           3
 T threonine           4.7         51           2
 V valine              7.2         77           2
 W tryptophan          0.6          6           1
 Y tyrosine            2.1         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 518B 
ZNF518A               0.062   zinc finger protein 518 
ZNF142                0.020   zinc finger protein 142 
ZFY                   0.018   zinc finger protein, Y-linked isoform 1 
ZFY                   0.018   zinc finger protein, Y-linked isoform 3 
ZFY                   0.018   zinc finger protein, Y-linked isoform 2 
ZNF236                0.018   zinc finger protein 236 
ZNF335                0.018   zinc finger protein 335 
ZFX                   0.017   zinc finger protein, X-linked 
PRDM5                 0.016   PR domain containing 5 
ZNF407                0.016   zinc finger protein 407 isoform 2 
ZNF407                0.016   zinc finger protein 407 isoform 1 
ZNF564                0.016   zinc finger protein 564 
ZBTB17                0.016   zinc finger and BTB domain containing 17 
REST                  0.015   RE1-silencing transcription factor 
ZNF141                0.015   zinc finger protein 141 
PLAGL2                0.015   pleiomorphic adenoma gene-like 2 
ZBTB7C                0.014   zinc finger and BTB domain containing 7C 
PLAGL1                0.014   pleiomorphic adenoma gene-like 1 isoform 1 
PLAGL1                0.014   pleiomorphic adenoma gene-like 1 isoform 1 
PLAGL1                0.014   pleiomorphic adenoma gene-like 1 isoform 2 
PLAGL1                0.014   pleiomorphic adenoma gene-like 1 isoform 2 
PLAGL1                0.014   pleiomorphic adenoma gene-like 1 isoform 2 
PLAGL1                0.014   pleiomorphic adenoma gene-like 1 isoform 2 
PLAGL1                0.014   pleiomorphic adenoma gene-like 1 isoform 2 
PLAGL1                0.014   pleiomorphic adenoma gene-like 1 isoform 1 
ZNF443                0.014   zinc finger protein 443 
PLAG1                 0.014   pleiomorphic adenoma gene 1 isoform a 
PLAG1                 0.014   pleiomorphic adenoma gene 1 isoform a 
ZNF509                0.014   zinc finger protein 509 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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