Guide to the Human Genome
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Name: LOC100294124 Sequence: fasta or formatted (454aa) NCBI GI: 239513938
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.9         54           2
 C cysteine            0.2          1           1
 D aspartate           6.6         30           1
 E glutamate          12.3         56           1
 F phenylalanine       0.2          1           1
 G glycine             1.1          5           1
 H histidine           0.2          1           1
 I isoleucine          1.3          6           1
 K lysine              0.2          1           1
 L leucine            23.6        107           2
 M methionine          0.9          4           1
 N asparagine          0.4          2           1
 P proline             8.4         38           2
 Q glutamine           0.0          0           0
 R arginine            0.7          3           1
 S serine              5.7         26           1
 T threonine           3.1         14           1
 V valine             22.7        103           2
 W tryptophan          0.4          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293520          1.000   PREDICTED: hypothetical protein 
LOC100294174          1.000   PREDICTED: hypothetical protein 
LOC100287207          0.997   PREDICTED: hypothetical protein XP_002342660 
LOC100294237          0.996   PREDICTED: hypothetical protein 
LOC100294292          0.891   PREDICTED: hypothetical protein XP_002344066 
LOC100289996          0.097   PREDICTED: hypothetical protein XP_002347212 
LOC100287396          0.095   PREDICTED: hypothetical protein XP_002343076 
SON                   0.023   SON DNA-binding protein isoform F 
SON                   0.023   SON DNA-binding protein isoform B 
KIAA0754              0.018   hypothetical protein LOC643314 
STRC                  0.015   stereocilin 
NAT6                  0.013   N-acetyltransferase 6 
ZNF518B               0.011   zinc finger protein 518B 
ZNF853                0.010   zinc finger protein 853 
TTN                   0.009   titin isoform N2-A 
ZFY                   0.008   zinc finger protein, Y-linked isoform 1 
ZFY                   0.008   zinc finger protein, Y-linked isoform 2 
LOC100294001          0.006   PREDICTED: hypothetical protein 
LOC647546             0.006   PREDICTED: hypothetical protein 
LOC100290969          0.006   PREDICTED: hypothetical protein XP_002347122 
LOC100289446          0.006   PREDICTED: hypothetical protein XP_002344250 
PPRC1                 0.006   peroxisome proliferator-activated receptor gamma, co...
MAST4                 0.006   microtubule associated serine/threonine kinase famil...
STAT2                 0.006   signal transducer and activator of transcription 2 [H...
HEATR5B               0.006   HEAT repeat containing 5B 
BPIL2                 0.005   bactericidal/permeability-increasing protein-like 2 ...
VPS13A                0.005   vacuolar protein sorting 13A isoform B 
VPS13A                0.005   vacuolar protein sorting 13A isoform D 
VPS13A                0.005   vacuolar protein sorting 13A isoform A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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