VPS13A 5913

Name: VPS13A	Sequence: fasta or formatted (3095aa)		NCBI GI: 15619008
Description: vacuolar protein sorting 13A isoform B		Referenced in: ER, Golgi, and the Secretory Pathway
Other entries for this name: alt prot [3135aa] vacuolar protein sorting 13A isoform C alt prot [3174aa] vacuolar protein sorting 13A isoform A alt prot [3069aa] vacuolar protein sorting 13A isoform D
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.4 167 2 C cysteine 1.0 31 1 D aspartate 5.4 168 10 E glutamate 7.7 238 3 F phenylalanine 4.4 136 2 G glycine 4.4 136 2 H histidine 2.2 67 3 I isoleucine 7.3 225 2 K lysine 7.8 241 3 L leucine 10.0 310 4 M methionine 2.6 80 3 N asparagine 4.3 134 3 P proline 4.6 142 3 Q glutamine 4.1 128 2 R arginine 3.3 102 2 S serine 7.4 229 4 T threonine 6.2 193 2 V valine 7.5 232 3 W tryptophan 1.1 35 2 Y tyrosine 3.3 101 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 vacuolar protein sorting 13A isoform B VPS13A 0.989 vacuolar protein sorting 13A isoform A VPS13A 0.989 vacuolar protein sorting 13A isoform D VPS13A 0.974 vacuolar protein sorting 13A isoform C VPS13C 0.271 vacuolar protein sorting 13C protein isoform 1B [Hom... VPS13C 0.271 vacuolar protein sorting 13C protein isoform 2B [Hom... VPS13C 0.271 vacuolar protein sorting 13C protein isoform 1A [Hom... VPS13C 0.271 vacuolar protein sorting 13C protein isoform 2A [Hom... VPS13D 0.031 vacuolar protein sorting 13D isoform 2 VPS13D 0.031 vacuolar protein sorting 13D isoform 1 VPS13B 0.014 vacuolar protein sorting 13B isoform 5 VPS13B 0.014 vacuolar protein sorting 13B isoform 1 VPS13B 0.008 vacuolar protein sorting 13B isoform 4 VPS13B 0.008 vacuolar protein sorting 13B isoform 3 ATG2A 0.004 autophagy related 2A ATG2B 0.003 ATG2 autophagy related 2 homolog B KIF20B 0.003 M-phase phosphoprotein 1 UHRF1BP1L 0.002 UHRF1 (ICBP90) binding protein 1-like isoform b [Hom... UHRF1BP1L 0.002 UHRF1 (ICBP90) binding protein 1-like isoform a [Hom... TLX1 0.002 T-cell leukemia homeobox 1 LRBA 0.002 LPS-responsive vesicle trafficking, beach and ancho... AKAP9 0.001 A-kinase anchor protein 9 isoform 2 AKAP9 0.001 A-kinase anchor protein 9 isoform 3 AHNAK2 0.001 AHNAK nucleoprotein 2 GCOM1 0.001 GRINL1A combined protein isoform 8 RNF8 0.001 ring finger protein 8 isoform 2 RNF8 0.001 ring finger protein 8 isoform 1 HRC 0.001 histidine rich calcium binding protein precursor [Hom... C19orf2 0.001 RPB5-mediating protein isoform b C19orf2 0.001 RPB5-mediating protein isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.