Guide to the Human Genome
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Search of human proteins with 239509039

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239509039 PREDICTED: hypothetical protein LOC100130187 [Homo
sapiens]
         (98 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169171964 PREDICTED: hypothetical protein LOC100130187 [Homo ...   215   7e-57
gi|169171220 PREDICTED: hypothetical protein LOC100130187 [Homo ...   215   7e-57
gi|239509039 PREDICTED: hypothetical protein LOC100130187 [Homo ...   215   7e-57
gi|169171540 PREDICTED: hypothetical protein LOC100130187 [Homo ...   213   3e-56
gi|5174735 tubulin, beta, 2 [Homo sapiens]                             67   2e-12
gi|50592996 tubulin, beta, 4 [Homo sapiens]                            65   1e-11
gi|21361322 tubulin, beta 4 [Homo sapiens]                             64   3e-11
gi|29788768 tubulin, beta 2B [Homo sapiens]                            62   8e-11
gi|4507729 tubulin, beta 2 [Homo sapiens]                              62   8e-11
gi|29788785 tubulin, beta [Homo sapiens]                               61   2e-10
gi|14210536 tubulin, beta 6 [Homo sapiens]                             60   3e-10
gi|55770868 tubulin, beta polypeptide 4, member Q [Homo sapiens]       60   5e-10
gi|42558279 tubulin, beta 8 [Homo sapiens]                             59   8e-10
gi|239753637 PREDICTED: similar to hCG1642465 [Homo sapiens]           50   4e-07
gi|13562114 beta tubulin 1, class VI [Homo sapiens]                    38   0.002
gi|169208124 PREDICTED: similar to hCG1647990 [Homo sapiens]           36   0.006
gi|239756254 PREDICTED: similar to tubulin, beta 5 [Homo sapiens]      34   0.029
gi|239750785 PREDICTED: similar to tubulin, beta 5 [Homo sapiens]      34   0.029
gi|166795268 retinol dehydrogenase 11 [Homo sapiens]                   31   0.19 
gi|57013276 tubulin, alpha, ubiquitous [Homo sapiens]                  28   1.2  
gi|17986283 tubulin, alpha 1a [Homo sapiens]                           28   1.2  
gi|14389309 tubulin alpha 6 [Homo sapiens]                             28   1.6  
gi|169178090 PREDICTED: similar to hCG1784562 [Homo sapiens]           28   2.1  
gi|169179398 PREDICTED: similar to hCG1784562 [Homo sapiens]           28   2.1  
gi|169181282 PREDICTED: similar to hCG1784562 [Homo sapiens]           28   2.1  
gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens]        28   2.1  
gi|186928839 retinol dehydrogenase 12 [Homo sapiens]                   27   2.7  
gi|71143132 carcinoembryonic antigen-related cell adhesion molec...    27   3.5  
gi|146219843 Snf2-related CBP activator protein [Homo sapiens]         26   6.0  
gi|33469935 EGF-like, fibronectin type III and laminin G domains...    26   6.0  

>gi|169171964 PREDICTED: hypothetical protein LOC100130187 [Homo
          sapiens]
          Length = 98

 Score =  215 bits (547), Expect = 7e-57
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  MNVKHQFSYPDTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME 60
          MNVKHQFSYPDTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME
Sbjct: 1  MNVKHQFSYPDTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME 60

Query: 61 FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT 98
          FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT
Sbjct: 61 FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT 98


>gi|169171220 PREDICTED: hypothetical protein LOC100130187 [Homo
          sapiens]
          Length = 98

 Score =  215 bits (547), Expect = 7e-57
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  MNVKHQFSYPDTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME 60
          MNVKHQFSYPDTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME
Sbjct: 1  MNVKHQFSYPDTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME 60

Query: 61 FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT 98
          FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT
Sbjct: 61 FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT 98


>gi|239509039 PREDICTED: hypothetical protein LOC100130187 [Homo
          sapiens]
          Length = 98

 Score =  215 bits (547), Expect = 7e-57
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  MNVKHQFSYPDTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME 60
          MNVKHQFSYPDTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME
Sbjct: 1  MNVKHQFSYPDTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME 60

Query: 61 FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT 98
          FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT
Sbjct: 61 FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT 98


>gi|169171540 PREDICTED: hypothetical protein LOC100130187 [Homo
          sapiens]
          Length = 98

 Score =  213 bits (541), Expect = 3e-56
 Identities = 97/98 (98%), Positives = 98/98 (100%)

Query: 1  MNVKHQFSYPDTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME 60
          MNVKHQFSYPDTKSLGW+KVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME
Sbjct: 1  MNVKHQFSYPDTKSLGWYKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME 60

Query: 61 FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT 98
          FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT
Sbjct: 61 FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT 98


>gi|5174735 tubulin, beta, 2 [Homo sapiens]
          Length = 445

 Score = 67.4 bits (163), Expect = 2e-12
 Identities = 33/44 (75%), Positives = 36/44 (81%)

Query: 54  EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEV 97
           EGMDEMEFTEA+ NMNDLV  YQQY DATAE +G F+E  EEEV
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFEEEAEEEV 444


>gi|50592996 tubulin, beta, 4 [Homo sapiens]
          Length = 450

 Score = 65.1 bits (157), Expect = 1e-11
 Identities = 32/43 (74%), Positives = 34/43 (79%)

Query: 54  EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEE 96
           EGMDEMEFTEA+ NMNDLV  YQQY DATAE +G   E DEEE
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEMYEDDEEE 443


>gi|21361322 tubulin, beta 4 [Homo sapiens]
          Length = 444

 Score = 63.5 bits (153), Expect = 3e-11
 Identities = 33/44 (75%), Positives = 36/44 (81%), Gaps = 1/44 (2%)

Query: 54  EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEV 97
           EGMDEMEFTEA+ NMNDLV  YQQY DATAE +G F+E  EEEV
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATAE-EGEFEEEAEEEV 443


>gi|29788768 tubulin, beta 2B [Homo sapiens]
          Length = 445

 Score = 62.4 bits (150), Expect = 8e-11
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query: 54  EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEE 96
           EGMDEMEFTEA+ NMNDLV  YQQY DATA+ +G F+E + E+
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEEGED 443


>gi|4507729 tubulin, beta 2 [Homo sapiens]
          Length = 445

 Score = 62.4 bits (150), Expect = 8e-11
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query: 54  EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEE 96
           EGMDEMEFTEA+ NMNDLV  YQQY DATA+ +G F+E + E+
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEEGED 443


>gi|29788785 tubulin, beta [Homo sapiens]
          Length = 444

 Score = 61.2 bits (147), Expect = 2e-10
 Identities = 31/43 (72%), Positives = 33/43 (76%)

Query: 54  EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEE 96
           EGMDEMEFTEA+ NMNDLV  YQQY DATAE +  F E  EEE
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEEDFGEEAEEE 443


>gi|14210536 tubulin, beta 6 [Homo sapiens]
          Length = 446

 Score = 60.5 bits (145), Expect = 3e-10
 Identities = 30/43 (69%), Positives = 36/43 (83%), Gaps = 1/43 (2%)

Query: 54  EGMDEMEFTEAKCNMNDLVFAYQQYHDATA-EGKGAFKEWDEE 95
           EGMDEMEFTEA+ NMNDLV  YQQY DATA +G+ AF++ +EE
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATANDGEEAFEDEEEE 443


>gi|55770868 tubulin, beta polypeptide 4, member Q [Homo sapiens]
          Length = 434

 Score = 59.7 bits (143), Expect = 5e-10
 Identities = 28/34 (82%), Positives = 29/34 (85%)

Query: 54  EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKG 87
           EGMDEMEFTEA+ NMNDLV  YQQY DATAEG G
Sbjct: 400 EGMDEMEFTEAESNMNDLVSEYQQYQDATAEGGG 433


>gi|42558279 tubulin, beta 8 [Homo sapiens]
          Length = 444

 Score = 58.9 bits (141), Expect = 8e-10
 Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)

Query: 54  EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEV 97
           EGMDEMEFTEA+ NMNDLV  YQQY DATAE +   +E+ EEEV
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATAE-EEEDEEYAEEEV 443


>gi|239753637 PREDICTED: similar to hCG1642465 [Homo sapiens]
          Length = 83

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 22/44 (50%), Positives = 33/44 (75%)

Query: 54 EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEV 97
          EG DE+EFTEA+ +MN+LV  YQ++ DA A+ +  +++W E EV
Sbjct: 39 EGKDEIEFTEAESSMNNLVSKYQEHQDAMAKEEEIWEDWAEREV 82


>gi|13562114 beta tubulin 1, class VI [Homo sapiens]
          Length = 451

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 10/53 (18%)

Query: 50  ALVH----EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT 98
           A VH    EGMD  EF EA+ N++DLV  YQQ+ DA A  +      ++EEVT
Sbjct: 393 AFVHWYTSEGMDINEFGEAENNIHDLVSEYQQFQDAKAVLE------EDEEVT 439


>gi|169208124 PREDICTED: similar to hCG1647990 [Homo sapiens]
          Length = 198

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 20/84 (23%)

Query: 2   NVKHQFSYPDTKSLGWHKVYFSREQR-HLHQQHNHSG---VVLCHFQTQGLPALVH---- 53
           +V H  S+P     G H     R+QR H    H  SG    VLC        A++H    
Sbjct: 115 HVGHPSSWPQD---GGH---VRRQQRGHPEALHGLSGQFPAVLCG------KAVLHWYAG 162

Query: 54  EGMDEMEFTEAKCNMNDLVFAYQQ 77
           EGM+EMEF EA+ NMND +  ++Q
Sbjct: 163 EGMNEMEFAEAENNMNDFISEHRQ 186


>gi|239756254 PREDICTED: similar to tubulin, beta 5 [Homo sapiens]
          Length = 365

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 14/24 (58%), Positives = 19/24 (79%)

Query: 54  EGMDEMEFTEAKCNMNDLVFAYQQ 77
           EGM+EMEF EA+ NMND +  ++Q
Sbjct: 330 EGMNEMEFAEAENNMNDFISEHRQ 353


>gi|239750785 PREDICTED: similar to tubulin, beta 5 [Homo sapiens]
          Length = 365

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 14/24 (58%), Positives = 19/24 (79%)

Query: 54  EGMDEMEFTEAKCNMNDLVFAYQQ 77
           EGM+EMEF EA+ NMND +  ++Q
Sbjct: 330 EGMNEMEFAEAENNMNDFISEHRQ 353


>gi|166795268 retinol dehydrogenase 11 [Homo sapiens]
          Length = 318

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 15/49 (30%), Positives = 27/49 (55%)

Query: 11  DTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEM 59
           DTKS+      F  E++HLH   N++GV++C +        +H G++ +
Sbjct: 103 DTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHL 151


>gi|57013276 tubulin, alpha, ubiquitous [Homo sapiens]
          Length = 451

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 52  VHEGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKG 87
           V EGM+E EF+EA+ +M  L   Y++    + EG+G
Sbjct: 409 VGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEG 444


>gi|17986283 tubulin, alpha 1a [Homo sapiens]
          Length = 451

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 52  VHEGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKG 87
           V EGM+E EF+EA+ +M  L   Y++    + EG+G
Sbjct: 409 VGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEG 444


>gi|14389309 tubulin alpha 6 [Homo sapiens]
          Length = 449

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 15/41 (36%), Positives = 26/41 (63%)

Query: 52  VHEGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEW 92
           V EGM+E EF+EA+ +M  L   Y++    +A+G+   +E+
Sbjct: 409 VGEGMEEGEFSEAREDMAALEKDYEEVGADSADGEDEGEEY 449


>gi|169178090 PREDICTED: similar to hCG1784562 [Homo sapiens]
          Length = 316

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 54  EGMDEMEFTEAKCNMNDLVFAY 75
           +GM ++EF E + NMN+LV  Y
Sbjct: 295 KGMHDVEFAEVESNMNNLVSEY 316


>gi|169179398 PREDICTED: similar to hCG1784562 [Homo sapiens]
          Length = 316

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 54  EGMDEMEFTEAKCNMNDLVFAY 75
           +GM ++EF E + NMN+LV  Y
Sbjct: 295 KGMHDVEFAEVESNMNNLVSEY 316


>gi|169181282 PREDICTED: similar to hCG1784562 [Homo sapiens]
          Length = 316

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 54  EGMDEMEFTEAKCNMNDLVFAY 75
           +GM ++EF E + NMN+LV  Y
Sbjct: 295 KGMHDVEFAEVESNMNNLVSEY 316


>gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens]
          Length = 5183

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)

Query: 34   NHSGVVLCHFQTQGLPALVHEGMD-----EMEFTEAKCNMNDLV 72
            NH G+V C  QT G+P +V    D     E++   AK  + D+V
Sbjct: 2172 NHPGLVCCVQQTTGVPLVVMVKPDTFLIQEIKTLPAKAKIQDMV 2215


>gi|186928839 retinol dehydrogenase 12 [Homo sapiens]
          Length = 316

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 11  DTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEM 59
           DTKS+      F  E++ LH   N++GV++C +         H G++ +
Sbjct: 101 DTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGVNHL 149


>gi|71143132 carcinoembryonic antigen-related cell adhesion
          molecule 4 [Homo sapiens]
          Length = 244

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 43 FQTQGLPALVHEGMDEMEFTEAKCNMNDLVFAYQQYHDATAEG 85
          F  + LP+   EG D +      CN+++ + AY  +   TAEG
Sbjct: 36 FTIEALPSSAAEGKDVLLLA---CNISETIQAYYWHKGKTAEG 75


>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
          Length = 3230

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)

Query: 63  EAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEV 97
           E + +M +L+   QQY  A A G G+ ++ DE+EV
Sbjct: 439 EGELSMEELL---QQYAGAYAPGSGSSEDEDEDEV 470


>gi|33469935 EGF-like, fibronectin type III and laminin G domains
           isoform 3 [Homo sapiens]
          Length = 375

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 15/71 (21%)

Query: 11  DTKSLG-WHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEMEFTEAKCNMN 69
           D  +LG WH++  SR  ++   Q +   +V              EGM E  FT+ KCN +
Sbjct: 54  DPLTLGNWHELRVSRTAKNGILQVDKQKIV--------------EGMAEGGFTQIKCNTD 99

Query: 70  DLVFAYQQYHD 80
             +     Y D
Sbjct: 100 IFIGGVPNYDD 110


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.131    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,001,629
Number of Sequences: 37866
Number of extensions: 155681
Number of successful extensions: 343
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 314
Number of HSP's gapped (non-prelim): 35
length of query: 98
length of database: 18,247,518
effective HSP length: 69
effective length of query: 29
effective length of database: 15,634,764
effective search space: 453408156
effective search space used: 453408156
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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