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Search of human proteins with 239509039
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239509039 PREDICTED: hypothetical protein LOC100130187 [Homo
sapiens]
(98 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169171964 PREDICTED: hypothetical protein LOC100130187 [Homo ... 215 7e-57
gi|169171220 PREDICTED: hypothetical protein LOC100130187 [Homo ... 215 7e-57
gi|239509039 PREDICTED: hypothetical protein LOC100130187 [Homo ... 215 7e-57
gi|169171540 PREDICTED: hypothetical protein LOC100130187 [Homo ... 213 3e-56
gi|5174735 tubulin, beta, 2 [Homo sapiens] 67 2e-12
gi|50592996 tubulin, beta, 4 [Homo sapiens] 65 1e-11
gi|21361322 tubulin, beta 4 [Homo sapiens] 64 3e-11
gi|29788768 tubulin, beta 2B [Homo sapiens] 62 8e-11
gi|4507729 tubulin, beta 2 [Homo sapiens] 62 8e-11
gi|29788785 tubulin, beta [Homo sapiens] 61 2e-10
gi|14210536 tubulin, beta 6 [Homo sapiens] 60 3e-10
gi|55770868 tubulin, beta polypeptide 4, member Q [Homo sapiens] 60 5e-10
gi|42558279 tubulin, beta 8 [Homo sapiens] 59 8e-10
gi|239753637 PREDICTED: similar to hCG1642465 [Homo sapiens] 50 4e-07
gi|13562114 beta tubulin 1, class VI [Homo sapiens] 38 0.002
gi|169208124 PREDICTED: similar to hCG1647990 [Homo sapiens] 36 0.006
gi|239756254 PREDICTED: similar to tubulin, beta 5 [Homo sapiens] 34 0.029
gi|239750785 PREDICTED: similar to tubulin, beta 5 [Homo sapiens] 34 0.029
gi|166795268 retinol dehydrogenase 11 [Homo sapiens] 31 0.19
gi|57013276 tubulin, alpha, ubiquitous [Homo sapiens] 28 1.2
gi|17986283 tubulin, alpha 1a [Homo sapiens] 28 1.2
gi|14389309 tubulin alpha 6 [Homo sapiens] 28 1.6
gi|169178090 PREDICTED: similar to hCG1784562 [Homo sapiens] 28 2.1
gi|169179398 PREDICTED: similar to hCG1784562 [Homo sapiens] 28 2.1
gi|169181282 PREDICTED: similar to hCG1784562 [Homo sapiens] 28 2.1
gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens] 28 2.1
gi|186928839 retinol dehydrogenase 12 [Homo sapiens] 27 2.7
gi|71143132 carcinoembryonic antigen-related cell adhesion molec... 27 3.5
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 26 6.0
gi|33469935 EGF-like, fibronectin type III and laminin G domains... 26 6.0
>gi|169171964 PREDICTED: hypothetical protein LOC100130187 [Homo
sapiens]
Length = 98
Score = 215 bits (547), Expect = 7e-57
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MNVKHQFSYPDTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME 60
MNVKHQFSYPDTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME
Sbjct: 1 MNVKHQFSYPDTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME 60
Query: 61 FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT 98
FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT
Sbjct: 61 FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT 98
>gi|169171220 PREDICTED: hypothetical protein LOC100130187 [Homo
sapiens]
Length = 98
Score = 215 bits (547), Expect = 7e-57
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MNVKHQFSYPDTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME 60
MNVKHQFSYPDTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME
Sbjct: 1 MNVKHQFSYPDTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME 60
Query: 61 FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT 98
FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT
Sbjct: 61 FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT 98
>gi|239509039 PREDICTED: hypothetical protein LOC100130187 [Homo
sapiens]
Length = 98
Score = 215 bits (547), Expect = 7e-57
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MNVKHQFSYPDTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME 60
MNVKHQFSYPDTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME
Sbjct: 1 MNVKHQFSYPDTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME 60
Query: 61 FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT 98
FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT
Sbjct: 61 FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT 98
>gi|169171540 PREDICTED: hypothetical protein LOC100130187 [Homo
sapiens]
Length = 98
Score = 213 bits (541), Expect = 3e-56
Identities = 97/98 (98%), Positives = 98/98 (100%)
Query: 1 MNVKHQFSYPDTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME 60
MNVKHQFSYPDTKSLGW+KVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME
Sbjct: 1 MNVKHQFSYPDTKSLGWYKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEME 60
Query: 61 FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT 98
FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT
Sbjct: 61 FTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT 98
>gi|5174735 tubulin, beta, 2 [Homo sapiens]
Length = 445
Score = 67.4 bits (163), Expect = 2e-12
Identities = 33/44 (75%), Positives = 36/44 (81%)
Query: 54 EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEV 97
EGMDEMEFTEA+ NMNDLV YQQY DATAE +G F+E EEEV
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFEEEAEEEV 444
>gi|50592996 tubulin, beta, 4 [Homo sapiens]
Length = 450
Score = 65.1 bits (157), Expect = 1e-11
Identities = 32/43 (74%), Positives = 34/43 (79%)
Query: 54 EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEE 96
EGMDEMEFTEA+ NMNDLV YQQY DATAE +G E DEEE
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEMYEDDEEE 443
>gi|21361322 tubulin, beta 4 [Homo sapiens]
Length = 444
Score = 63.5 bits (153), Expect = 3e-11
Identities = 33/44 (75%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 54 EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEV 97
EGMDEMEFTEA+ NMNDLV YQQY DATAE +G F+E EEEV
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATAE-EGEFEEEAEEEV 443
>gi|29788768 tubulin, beta 2B [Homo sapiens]
Length = 445
Score = 62.4 bits (150), Expect = 8e-11
Identities = 29/43 (67%), Positives = 35/43 (81%)
Query: 54 EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEE 96
EGMDEMEFTEA+ NMNDLV YQQY DATA+ +G F+E + E+
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEEGED 443
>gi|4507729 tubulin, beta 2 [Homo sapiens]
Length = 445
Score = 62.4 bits (150), Expect = 8e-11
Identities = 29/43 (67%), Positives = 35/43 (81%)
Query: 54 EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEE 96
EGMDEMEFTEA+ NMNDLV YQQY DATA+ +G F+E + E+
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEEGED 443
>gi|29788785 tubulin, beta [Homo sapiens]
Length = 444
Score = 61.2 bits (147), Expect = 2e-10
Identities = 31/43 (72%), Positives = 33/43 (76%)
Query: 54 EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEE 96
EGMDEMEFTEA+ NMNDLV YQQY DATAE + F E EEE
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEEDFGEEAEEE 443
>gi|14210536 tubulin, beta 6 [Homo sapiens]
Length = 446
Score = 60.5 bits (145), Expect = 3e-10
Identities = 30/43 (69%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 54 EGMDEMEFTEAKCNMNDLVFAYQQYHDATA-EGKGAFKEWDEE 95
EGMDEMEFTEA+ NMNDLV YQQY DATA +G+ AF++ +EE
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATANDGEEAFEDEEEE 443
>gi|55770868 tubulin, beta polypeptide 4, member Q [Homo sapiens]
Length = 434
Score = 59.7 bits (143), Expect = 5e-10
Identities = 28/34 (82%), Positives = 29/34 (85%)
Query: 54 EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKG 87
EGMDEMEFTEA+ NMNDLV YQQY DATAEG G
Sbjct: 400 EGMDEMEFTEAESNMNDLVSEYQQYQDATAEGGG 433
>gi|42558279 tubulin, beta 8 [Homo sapiens]
Length = 444
Score = 58.9 bits (141), Expect = 8e-10
Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 54 EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEV 97
EGMDEMEFTEA+ NMNDLV YQQY DATAE + +E+ EEEV
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATAE-EEEDEEYAEEEV 443
>gi|239753637 PREDICTED: similar to hCG1642465 [Homo sapiens]
Length = 83
Score = 50.1 bits (118), Expect = 4e-07
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 54 EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEV 97
EG DE+EFTEA+ +MN+LV YQ++ DA A+ + +++W E EV
Sbjct: 39 EGKDEIEFTEAESSMNNLVSKYQEHQDAMAKEEEIWEDWAEREV 82
>gi|13562114 beta tubulin 1, class VI [Homo sapiens]
Length = 451
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 10/53 (18%)
Query: 50 ALVH----EGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEVT 98
A VH EGMD EF EA+ N++DLV YQQ+ DA A + ++EEVT
Sbjct: 393 AFVHWYTSEGMDINEFGEAENNIHDLVSEYQQFQDAKAVLE------EDEEVT 439
>gi|169208124 PREDICTED: similar to hCG1647990 [Homo sapiens]
Length = 198
Score = 36.2 bits (82), Expect = 0.006
Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 20/84 (23%)
Query: 2 NVKHQFSYPDTKSLGWHKVYFSREQR-HLHQQHNHSG---VVLCHFQTQGLPALVH---- 53
+V H S+P G H R+QR H H SG VLC A++H
Sbjct: 115 HVGHPSSWPQD---GGH---VRRQQRGHPEALHGLSGQFPAVLCG------KAVLHWYAG 162
Query: 54 EGMDEMEFTEAKCNMNDLVFAYQQ 77
EGM+EMEF EA+ NMND + ++Q
Sbjct: 163 EGMNEMEFAEAENNMNDFISEHRQ 186
>gi|239756254 PREDICTED: similar to tubulin, beta 5 [Homo sapiens]
Length = 365
Score = 33.9 bits (76), Expect = 0.029
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 54 EGMDEMEFTEAKCNMNDLVFAYQQ 77
EGM+EMEF EA+ NMND + ++Q
Sbjct: 330 EGMNEMEFAEAENNMNDFISEHRQ 353
>gi|239750785 PREDICTED: similar to tubulin, beta 5 [Homo sapiens]
Length = 365
Score = 33.9 bits (76), Expect = 0.029
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 54 EGMDEMEFTEAKCNMNDLVFAYQQ 77
EGM+EMEF EA+ NMND + ++Q
Sbjct: 330 EGMNEMEFAEAENNMNDFISEHRQ 353
>gi|166795268 retinol dehydrogenase 11 [Homo sapiens]
Length = 318
Score = 31.2 bits (69), Expect = 0.19
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 11 DTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEM 59
DTKS+ F E++HLH N++GV++C + +H G++ +
Sbjct: 103 DTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHL 151
>gi|57013276 tubulin, alpha, ubiquitous [Homo sapiens]
Length = 451
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 52 VHEGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKG 87
V EGM+E EF+EA+ +M L Y++ + EG+G
Sbjct: 409 VGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEG 444
>gi|17986283 tubulin, alpha 1a [Homo sapiens]
Length = 451
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 52 VHEGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKG 87
V EGM+E EF+EA+ +M L Y++ + EG+G
Sbjct: 409 VGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEG 444
>gi|14389309 tubulin alpha 6 [Homo sapiens]
Length = 449
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 52 VHEGMDEMEFTEAKCNMNDLVFAYQQYHDATAEGKGAFKEW 92
V EGM+E EF+EA+ +M L Y++ +A+G+ +E+
Sbjct: 409 VGEGMEEGEFSEAREDMAALEKDYEEVGADSADGEDEGEEY 449
>gi|169178090 PREDICTED: similar to hCG1784562 [Homo sapiens]
Length = 316
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 54 EGMDEMEFTEAKCNMNDLVFAY 75
+GM ++EF E + NMN+LV Y
Sbjct: 295 KGMHDVEFAEVESNMNNLVSEY 316
>gi|169179398 PREDICTED: similar to hCG1784562 [Homo sapiens]
Length = 316
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 54 EGMDEMEFTEAKCNMNDLVFAY 75
+GM ++EF E + NMN+LV Y
Sbjct: 295 KGMHDVEFAEVESNMNNLVSEY 316
>gi|169181282 PREDICTED: similar to hCG1784562 [Homo sapiens]
Length = 316
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 54 EGMDEMEFTEAKCNMNDLVFAY 75
+GM ++EF E + NMN+LV Y
Sbjct: 295 KGMHDVEFAEVESNMNNLVSEY 316
>gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens]
Length = 5183
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 34 NHSGVVLCHFQTQGLPALVHEGMD-----EMEFTEAKCNMNDLV 72
NH G+V C QT G+P +V D E++ AK + D+V
Sbjct: 2172 NHPGLVCCVQQTTGVPLVVMVKPDTFLIQEIKTLPAKAKIQDMV 2215
>gi|186928839 retinol dehydrogenase 12 [Homo sapiens]
Length = 316
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 11 DTKSLGWHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEM 59
DTKS+ F E++ LH N++GV++C + H G++ +
Sbjct: 101 DTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGVNHL 149
>gi|71143132 carcinoembryonic antigen-related cell adhesion
molecule 4 [Homo sapiens]
Length = 244
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 43 FQTQGLPALVHEGMDEMEFTEAKCNMNDLVFAYQQYHDATAEG 85
F + LP+ EG D + CN+++ + AY + TAEG
Sbjct: 36 FTIEALPSSAAEGKDVLLLA---CNISETIQAYYWHKGKTAEG 75
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 63 EAKCNMNDLVFAYQQYHDATAEGKGAFKEWDEEEV 97
E + +M +L+ QQY A A G G+ ++ DE+EV
Sbjct: 439 EGELSMEELL---QQYAGAYAPGSGSSEDEDEDEV 470
>gi|33469935 EGF-like, fibronectin type III and laminin G domains
isoform 3 [Homo sapiens]
Length = 375
Score = 26.2 bits (56), Expect = 6.0
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 15/71 (21%)
Query: 11 DTKSLG-WHKVYFSREQRHLHQQHNHSGVVLCHFQTQGLPALVHEGMDEMEFTEAKCNMN 69
D +LG WH++ SR ++ Q + +V EGM E FT+ KCN +
Sbjct: 54 DPLTLGNWHELRVSRTAKNGILQVDKQKIV--------------EGMAEGGFTQIKCNTD 99
Query: 70 DLVFAYQQYHD 80
+ Y D
Sbjct: 100 IFIGGVPNYDD 110
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.131 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,001,629
Number of Sequences: 37866
Number of extensions: 155681
Number of successful extensions: 343
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 314
Number of HSP's gapped (non-prelim): 35
length of query: 98
length of database: 18,247,518
effective HSP length: 69
effective length of query: 29
effective length of database: 15,634,764
effective search space: 453408156
effective search space used: 453408156
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.