Guide to the Human Genome
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Name: RDH11 Sequence: fasta or formatted (318aa) NCBI GI: 166795268
Description:

retinol dehydrogenase 11

Referenced in:

Alcohol and Aldehyde Dehydrogenases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         25           2
 C cysteine            2.2          7           1
 D aspartate           2.5          8           1
 E glutamate           5.3         17           2
 F phenylalanine       4.4         14           2
 G glycine             7.2         23           1
 H histidine           5.0         16           2
 I isoleucine          4.1         13           1
 K lysine              5.3         17           1
 L leucine            14.2         45           6
 M methionine          2.8          9           2
 N asparagine          3.5         11           2
 P proline             2.8          9           1
 Q glutamine           4.1         13           2
 R arginine            4.7         15           2
 S serine              6.9         22           2
 T threonine           6.0         19           3
 V valine              7.5         24           4
 W tryptophan          1.6          5           2
 Y tyrosine            1.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retinol dehydrogenase 11 
RDH12                 0.705   retinol dehydrogenase 12 
RDH13                 0.422   retinol dehydrogenase 13 isoform 1 
RDH14                 0.377   retinol dehydrogenase 14 (all-trans and 9-cis) [Homo...
DHRS13                0.356   dehydrogenase/reductase (SDR family) member 13 [Hom...
RDH13                 0.318   retinol dehydrogenase 13 isoform 2 
WWOX                  0.278   WW domain-containing oxidoreductase isoform 1 
DHRSX                 0.269   dehydrogenase/reductase (SDR family) X-linked [Homo...
DHRS12                0.097   dehydrogenase/reductase (SDR family) member 12 isofo...
DHRS7                 0.088   dehydrogenase/reductase (SDR family) member 7 
DHRS12                0.086   dehydrogenase/reductase (SDR family) member 12 isofo...
HSD17B11              0.078   estradiol 17-beta-dehydrogenase 11 
RDH16                 0.076   retinol dehydrogenase 16 
KDSR                  0.073   3-ketodihydrosphingosine reductase precursor 
HSD17B6               0.071   hydroxysteroid (17-beta) dehydrogenase 6 
SDR9C7                0.070   short chain dehydrogenase/reductase family 9C, membe...
HSD17B14              0.062   dehydrogenase/reductase (SDR family) member 10 [Homo...
RDH5                  0.062   retinol dehydrogenase 5 (11-cis and 9-cis) 
HSDL1                 0.060   hydroxysteroid dehydrogenase like 1 isoform a [Homo...
HSD17B7               0.060   hydroxysteroid (17-beta) dehydrogenase 7 
HSD17B13              0.060   hydroxysteroid (17-beta) dehydrogenase 13 isoform A...
HPGD                  0.057   hydroxyprostaglandin dehydrogenase 15-(NAD) isoform ...
CBR3                  0.057   carbonyl reductase 3 
DHRS7C                0.057   dehydrogenase/reductase (SDR family) member 7C [Hom...
HSD17B3               0.057   estradiol 17 beta-dehydrogenase 3 
DHRS1                 0.057   dehydrogenase/reductase (SDR family) member 1 [Homo...
DHRS1                 0.057   dehydrogenase/reductase (SDR family) member 1 
DHRS9                 0.055   NADP-dependent retinol dehydrogenase/reductase [Homo...
DHRS9                 0.055   NADP-dependent retinol dehydrogenase/reductase [Hom...
DHRS9                 0.055   NADP-dependent retinol dehydrogenase/reductase [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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