Guide to the Human Genome
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Name: EGFLAM Sequence: fasta or formatted (375aa) NCBI GI: 33469935
Description:

EGF-like, fibronectin type III and laminin G domains isoform 3

Referenced in:

Fibronectin Family

Other entries for this name:
alt prot [1009aa] EGF-like, fibronectin type III and laminin G domains isoform 1
alt prot [775aa] EGF-like, fibronectin type III and laminin G domains isoform 2
alt prot [152aa] EGF-like, fibronectin type III and laminin G domains isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         18           2
 C cysteine            2.7         10           1
 D aspartate           7.2         27           2
 E glutamate           3.7         14           1
 F phenylalanine       4.5         17           1
 G glycine            12.0         45           2
 H histidine           2.9         11           1
 I isoleucine          6.7         25           2
 K lysine              5.6         21           2
 L leucine             7.5         28           3
 M methionine          2.4          9           2
 N asparagine          5.3         20           1
 P proline             3.5         13           1
 Q glutamine           2.4          9           1
 R arginine            6.1         23           1
 S serine              7.5         28           1
 T threonine           4.8         18           2
 V valine              6.7         25           1
 W tryptophan          0.8          3           1
 Y tyrosine            2.9         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   EGF-like, fibronectin type III and laminin G domains... 
EGFLAM                1.000   EGF-like, fibronectin type III and laminin G domains...
EGFLAM                1.000   EGF-like, fibronectin type III and laminin G domains...
EGFLAM                0.385   EGF-like, fibronectin type III and laminin G domains...
AGRN                  0.242   agrin 
HSPG2                 0.228   heparan sulfate proteoglycan 2 
EYS                   0.116   eyes shut homolog isoform 1 
NRXN2                 0.113   neurexin 2 isoform alpha-2 precursor 
NRXN1                 0.103   neurexin 1 isoform alpha1 precursor 
NRXN3                 0.100   neurexin 3 isoform 1 precursor 
NRXN2                 0.097   neurexin 2 isoform alpha-1 precursor 
NRXN1                 0.097   neurexin 1 isoform alpha2 precursor 
FAT4                  0.085   FAT tumor suppressor homolog 4 
CNTNAP5               0.081   contactin associated protein-like 5 
LAMA2                 0.081   laminin alpha 2 subunit isoform b precursor 
LAMA1                 0.080   laminin, alpha 1 precursor 
LAMA2                 0.077   laminin alpha 2 subunit isoform a precursor 
LAMA4                 0.075   laminin, alpha 4 isoform 2 precursor 
LAMA4                 0.075   laminin, alpha 4 isoform 1 precursor 
LAMA4                 0.075   laminin, alpha 4 isoform 2 precursor 
CNTNAP2               0.072   cell recognition molecule Caspr2 precursor 
LOC389722             0.071   PREDICTED: hypothetical protein LOC389722 isoform 1...
CNTNAP3               0.069   cell recognition molecule CASPR3 
FAT3                  0.065   FAT tumor suppressor homolog 3 
LOC643827             0.065   PREDICTED: similar to cell recognition molecule CAS...
CNTNAP4               0.065   cell recognition protein CASPR4 isoform 2 
CNTNAP4               0.065   cell recognition protein CASPR4 isoform 1 
CELSR1                0.064   cadherin EGF LAG seven-pass G-type receptor 1 
FAT1                  0.064   FAT tumor suppressor 1 precursor 
USH2A                 0.059   usherin isoform B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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