Guide to the Human Genome
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Name: LOC442434 Sequence: fasta or formatted (316aa) NCBI GI: 169178090
Description:

PREDICTED: similar to hCG1784562

Referenced in:

Tubulins and Microtubules

Other entries for this name:
alt mRNA [316aa] PREDICTED: similar to hCG1784562
alt mRNA [316aa] PREDICTED: similar to hCG1784562
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         26           2
 C cysteine            3.5         11           1
 D aspartate           3.2         10           1
 E glutamate           7.0         22           2
 F phenylalanine       5.1         16           2
 G glycine             7.6         24           2
 H histidine           2.8          9           1
 I isoleucine          4.1         13           1
 K lysine              5.4         17           2
 L leucine             7.6         24           2
 M methionine          3.5         11           1
 N asparagine          4.4         14           2
 P proline             4.7         15           3
 Q glutamine           4.7         15           1
 R arginine            5.1         16           1
 S serine              7.6         24           2
 T threonine           4.1         13           1
 V valine              5.4         17           1
 W tryptophan          2.5          8           1
 Y tyrosine            3.5         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1784562 
LOC442434             1.000   PREDICTED: similar to hCG1784562 
LOC442434             1.000   PREDICTED: similar to hCG1784562 
TUBB8                 0.263   tubulin, beta 8 
TUBB2C                0.257   tubulin, beta, 2 
TUBB2B                0.257   tubulin, beta 2B 
TUBB2A                0.257   tubulin, beta 2 
TUBB                  0.255   tubulin, beta 
TUBB4Q                0.252   tubulin, beta polypeptide 4, member Q 
TUBB4                 0.249   tubulin, beta 4 
TUBB3                 0.248   tubulin, beta, 4 
TUBB6                 0.240   tubulin, beta 6 
TUBB1                 0.191   beta tubulin 1, class VI 
LOC100130736          0.121   PREDICTED: similar to tubulin, beta 5 
LOC100130736          0.121   PREDICTED: similar to tubulin, beta 5 
LOC100292044          0.096   PREDICTED: similar to hCG1642465 
TUBA1B                0.071   tubulin, alpha, ubiquitous 
TUBA4A                0.069   tubulin, alpha 4a 
TUBA1A                0.069   tubulin, alpha 1a 
TUBA3D                0.067   tubulin, alpha 3d 
TUBA3C                0.067   tubulin, alpha 3c 
TUBA1C                0.067   tubulin alpha 6 
TUBA8                 0.064   tubulin, alpha 8 
TUBA3E                0.063   tubulin, alpha 3e 
LOC100130736          0.061   PREDICTED: similar to hCG1647990 
TUBAL3                0.061   tubulin, alpha-like 3 
TUBE1                 0.053   tubulin, epsilon 1 
TUBG2                 0.020   tubulin, gamma 2 
TUBG1                 0.019   tubulin, gamma 1 
LOC100133673          0.019   PREDICTED: similar to tubulin, gamma 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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