Guide to the Human Genome
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Name: TUBA1A Sequence: fasta or formatted (451aa) NCBI GI: 17986283
Description:

tubulin, alpha 1a

Referenced in:

Tubulins and Microtubules

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         36           2
 C cysteine            2.7         12           2
 D aspartate           6.0         27           2
 E glutamate           8.2         37           3
 F phenylalanine       4.4         20           2
 G glycine             8.2         37           3
 H histidine           2.9         13           1
 I isoleucine          6.0         27           2
 K lysine              4.2         19           2
 L leucine             7.1         32           2
 M methionine          2.2         10           1
 N asparagine          3.5         16           2
 P proline             4.4         20           2
 Q glutamine           3.5         16           1
 R arginine            4.7         21           2
 S serine              4.7         21           2
 T threonine           6.7         30           2
 V valine              7.5         34           2
 W tryptophan          0.9          4           1
 Y tyrosine            4.2         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tubulin, alpha 1a 
TUBA1B                0.996   tubulin, alpha, ubiquitous 
TUBA1C                0.980   tubulin alpha 6 
TUBA3D                0.978   tubulin, alpha 3d 
TUBA3C                0.978   tubulin, alpha 3c 
TUBA3E                0.962   tubulin, alpha 3e 
TUBA4A                0.958   tubulin, alpha 4a 
TUBA8                 0.902   tubulin, alpha 8 
TUBAL3                0.756   tubulin, alpha-like 3 
TUBB2C                0.391   tubulin, beta, 2 
TUBB4                 0.391   tubulin, beta 4 
TUBB                  0.391   tubulin, beta 
TUBB2A                0.387   tubulin, beta 2 
TUBB6                 0.387   tubulin, beta 6 
TUBB2B                0.387   tubulin, beta 2B 
TUBB3                 0.385   tubulin, beta, 4 
TUBB8                 0.377   tubulin, beta 8 
TUBB1                 0.362   beta tubulin 1, class VI 
TUBB4Q                0.330   tubulin, beta polypeptide 4, member Q 
TUBG1                 0.232   tubulin, gamma 1 
TUBG2                 0.229   tubulin, gamma 2 
TUBE1                 0.228   tubulin, epsilon 1 
LOC100130736          0.119   PREDICTED: similar to tubulin, beta 5 
LOC100130736          0.119   PREDICTED: similar to tubulin, beta 5 
TUBD1                 0.094   delta-tubulin 
LOC442434             0.049   PREDICTED: similar to hCG1784562 
LOC442434             0.049   PREDICTED: similar to hCG1784562 
LOC442434             0.049   PREDICTED: similar to hCG1784562 
LOC100130736          0.047   PREDICTED: similar to hCG1647990 
LOC100292044          0.023   PREDICTED: similar to hCG1642465 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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