Guide to the Human Genome
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Name: LOC100130187 Sequence: fasta or formatted (98aa) NCBI GI: 169171964
Description:

PREDICTED: hypothetical protein LOC100130187

Not currently referenced in the text

Other entries for this name:
alt mRNA {98aa} PREDICTED: hypothetical protein LOC100130187
alt prot {98aa} PREDICTED: hypothetical protein LOC100130187
alt mRNA {98aa} PREDICTED: hypothetical protein LOC100130187
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1          6           1
 C cysteine            2.0          2           1
 D aspartate           5.1          5           1
 E glutamate          10.2         10           3
 F phenylalanine       6.1          6           1
 G glycine             6.1          6           1
 H histidine           9.2          9           1
 I isoleucine          0.0          0           0
 K lysine              6.1          6           1
 L leucine             6.1          6           1
 M methionine          4.1          4           1
 N asparagine          4.1          4           1
 P proline             2.0          2           1
 Q glutamine           8.2          8           2
 R arginine            2.0          2           1
 S serine              4.1          4           1
 T threonine           5.1          5           1
 V valine              7.1          7           2
 W tryptophan          2.0          2           1
 Y tyrosine            4.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC100130187 
LOC100130187          1.000   PREDICTED: hypothetical protein LOC100130187 
LOC100130187          1.000   PREDICTED: hypothetical protein LOC100130187 
LOC100130187          0.989   PREDICTED: hypothetical protein LOC100130187 
TUBB2C                0.221   tubulin, beta, 2 
TUBB3                 0.211   tubulin, beta, 4 
TUBB4                 0.205   tubulin, beta 4 
TUBB2B                0.195   tubulin, beta 2B 
TUBB2A                0.195   tubulin, beta 2 
TUBB                  0.189   tubulin, beta 
TUBB6                 0.184   tubulin, beta 6 
TUBB4Q                0.184   tubulin, beta polypeptide 4, member Q 
TUBB8                 0.179   tubulin, beta 8 
LOC100292044          0.132   PREDICTED: similar to hCG1642465 
TUBB1                 0.068   beta tubulin 1, class VI 
LOC100130736          0.058   PREDICTED: similar to hCG1647990 
LOC100130736          0.047   PREDICTED: similar to tubulin, beta 5 
LOC100130736          0.047   PREDICTED: similar to tubulin, beta 5 
RDH11                 0.032   retinol dehydrogenase 11 
TUBA1B                0.016   tubulin, alpha, ubiquitous 
TUBA1A                0.016   tubulin, alpha 1a 
TUBA1C                0.016   tubulin alpha 6 
LOC442434             0.016   PREDICTED: similar to hCG1784562 
LOC442434             0.016   PREDICTED: similar to hCG1784562 
LOC442434             0.016   PREDICTED: similar to hCG1784562 
UBR4                  0.016   retinoblastoma-associated factor 600 
RDH12                 0.011   retinol dehydrogenase 12 
CEACAM4               0.011   carcinoembryonic antigen-related cell adhesion molec...
SRCAP                 0.005   Snf2-related CBP activator protein 
EGFLAM                0.005   EGF-like, fibronectin type III and laminin G domains...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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