Guide to the Human Genome
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Name: LOC100132050 Sequence: fasta or formatted (162aa) NCBI GI: 239508818
Description:

PREDICTED: similar to hCG1779533

Not currently referenced in the text

Other entries for this name:
alt mRNA {162aa} PREDICTED: similar to hCG1779533
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         17           1
 C cysteine            4.3          7           1
 D aspartate           1.9          3           1
 E glutamate           0.0          0           0
 F phenylalanine       2.5          4           1
 G glycine             7.4         12           2
 H histidine           4.9          8           1
 I isoleucine          0.6          1           1
 K lysine              1.9          3           1
 L leucine            16.0         26           3
 M methionine          1.2          2           1
 N asparagine          2.5          4           1
 P proline            11.1         18           1
 Q glutamine           7.4         12           1
 R arginine            6.2         10           1
 S serine             16.7         27           4
 T threonine           3.7          6           1
 V valine              0.6          1           1
 W tryptophan          0.6          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1779533 
LOC100132050          1.000   PREDICTED: similar to hCG1779533 
LOC100292470          0.925   PREDICTED: similar to hCG1779533 
LOC729218             0.886   PREDICTED: hypothetical protein 
LOC728417             0.578   PREDICTED: hypothetical protein 
LOC728417             0.578   PREDICTED: hypothetical protein 
LOC728417             0.575   PREDICTED: hypothetical protein isoform 1 
LOC729737             0.558   PREDICTED: hypothetical protein 
LOC100133161          0.224   PREDICTED: hypothetical protein 
LOC100132062          0.221   PREDICTED: hypothetical protein 
LOC100132287          0.221   PREDICTED: hypothetical protein 
LOC100132062          0.221   PREDICTED: hypothetical protein 
LOC100293878          0.218   PREDICTED: similar to hCG1779533 
LOC730826             0.201   PREDICTED: hypothetical protein 
LOC100288155          0.201   PREDICTED: hypothetical protein XP_002342801, parti...
LOC100133331          0.201   PREDICTED: hypothetical protein 
LOC100288155          0.201   PREDICTED: hypothetical protein, partial 
LOC100287258          0.198   PREDICTED: hypothetical protein XP_002342766 
LOC100287258          0.198   PREDICTED: hypothetical protein 
LOC100128326          0.188   PREDICTED: hypothetical protein 
LOC100128326          0.188   PREDICTED: hypothetical protein 
LOC100128326          0.188   PREDICTED: hypothetical protein 
LOC731275             0.185   PREDICTED: hypothetical protein 
LOC100290352          0.172   PREDICTED: hypothetical protein XP_002347695, parti...
LOC728417             0.143   PREDICTED: hypothetical protein isoform 2 
LOC100294359          0.136   PREDICTED: hypothetical protein 
LOC100129904          0.133   PREDICTED: hypothetical protein 
LOC100129904          0.133   PREDICTED: hypothetical protein 
LOC100129904          0.133   PREDICTED: hypothetical protein 
LOC100129904          0.133   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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