Guide to the Human Genome
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Name: LOC100292470 Sequence: fasta or formatted (161aa) NCBI GI: 239754548
Description:

PREDICTED: similar to hCG1779533

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         17           1
 C cysteine            5.0          8           1
 D aspartate           2.5          4           1
 E glutamate           0.0          0           0
 F phenylalanine       2.5          4           1
 G glycine             6.8         11           2
 H histidine           4.3          7           1
 I isoleucine          0.6          1           1
 K lysine              1.9          3           1
 L leucine            15.5         25           2
 M methionine          1.2          2           1
 N asparagine          2.5          4           1
 P proline            11.8         19           1
 Q glutamine           7.5         12           1
 R arginine            5.6          9           1
 S serine             16.8         27           4
 T threonine           3.7          6           1
 V valine              0.6          1           1
 W tryptophan          0.6          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1779533 
LOC100132050          0.925   PREDICTED: similar to hCG1779533 
LOC100132050          0.925   PREDICTED: similar to hCG1779533 
LOC729218             0.880   PREDICTED: hypothetical protein 
LOC728417             0.571   PREDICTED: hypothetical protein 
LOC728417             0.571   PREDICTED: hypothetical protein 
LOC729737             0.568   PREDICTED: hypothetical protein 
LOC728417             0.565   PREDICTED: hypothetical protein isoform 1 
LOC100293878          0.224   PREDICTED: similar to hCG1779533 
LOC100133161          0.221   PREDICTED: hypothetical protein 
LOC100288155          0.218   PREDICTED: hypothetical protein XP_002342801, parti...
LOC100132062          0.218   PREDICTED: hypothetical protein 
LOC100132287          0.218   PREDICTED: hypothetical protein 
LOC100288155          0.218   PREDICTED: hypothetical protein, partial 
LOC730826             0.218   PREDICTED: hypothetical protein 
LOC100132062          0.218   PREDICTED: hypothetical protein 
LOC100287258          0.214   PREDICTED: hypothetical protein XP_002342766 
LOC100287258          0.214   PREDICTED: hypothetical protein 
LOC100133331          0.208   PREDICTED: hypothetical protein 
LOC100128326          0.201   PREDICTED: hypothetical protein 
LOC100128326          0.201   PREDICTED: hypothetical protein 
LOC100128326          0.201   PREDICTED: hypothetical protein 
LOC100290352          0.188   PREDICTED: hypothetical protein XP_002347695, parti...
LOC731275             0.179   PREDICTED: hypothetical protein 
LOC728417             0.146   PREDICTED: hypothetical protein isoform 2 
LOC100294359          0.143   PREDICTED: hypothetical protein 
LOC100129904          0.140   PREDICTED: hypothetical protein 
LOC100129904          0.140   PREDICTED: hypothetical protein 
LOC100129904          0.140   PREDICTED: hypothetical protein 
LOC100129904          0.140   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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