Guide to the Human Genome
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Name: LOC100129904 Sequence: fasta or formatted (210aa) NCBI GI: 239754546
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {210aa} PREDICTED: hypothetical protein
alt mRNA {210aa} PREDICTED: hypothetical protein
alt mRNA {210aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         18           1
 C cysteine            1.4          3           1
 D aspartate           1.0          2           1
 E glutamate           0.5          1           1
 F phenylalanine       3.3          7           1
 G glycine             4.3          9           1
 H histidine           3.3          7           1
 I isoleucine          0.5          1           1
 K lysine              1.4          3           1
 L leucine            14.3         30           2
 M methionine          1.4          3           1
 N asparagine          1.9          4           1
 P proline            14.8         31           2
 Q glutamine           9.5         20           2
 R arginine            3.3          7           1
 S serine             15.7         33           3
 T threonine           7.1         15           2
 V valine              3.8          8           1
 W tryptophan          2.4          5           2
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129904          1.000   PREDICTED: hypothetical protein 
LOC100129904          1.000   PREDICTED: hypothetical protein 
LOC100129904          1.000   PREDICTED: hypothetical protein 
LOC100294359          0.902   PREDICTED: hypothetical protein 
LOC728417             0.882   PREDICTED: hypothetical protein isoform 2 
LOC728417             0.833   PREDICTED: hypothetical protein 
LOC728417             0.833   PREDICTED: hypothetical protein 
LOC728417             0.833   PREDICTED: hypothetical protein isoform 1 
LOC729737             0.620   PREDICTED: hypothetical protein 
LOC100131871          0.446   PREDICTED: similar to hCG1779533 
LOC100131871          0.446   PREDICTED: similar to hCG1779533 
LOC100131871          0.446   PREDICTED: similar to hCG1779533 
LOC100128326          0.363   PREDICTED: hypothetical protein 
LOC100128326          0.363   PREDICTED: hypothetical protein 
LOC100132062          0.355   PREDICTED: hypothetical protein 
LOC100128326          0.353   PREDICTED: hypothetical protein 
LOC100132062          0.346   PREDICTED: hypothetical protein 
LOC100132287          0.346   PREDICTED: hypothetical protein 
LOC100133161          0.343   PREDICTED: hypothetical protein 
LOC731275             0.341   PREDICTED: hypothetical protein 
LOC100293878          0.336   PREDICTED: similar to hCG1779533 
LOC100133331          0.333   PREDICTED: hypothetical protein 
LOC730826             0.299   PREDICTED: hypothetical protein 
LOC100288155          0.277   PREDICTED: hypothetical protein XP_002342801, parti...
LOC100287258          0.277   PREDICTED: hypothetical protein XP_002342766 
LOC100288155          0.277   PREDICTED: hypothetical protein, partial 
LOC100287258          0.277   PREDICTED: hypothetical protein 
LOC100290352          0.275   PREDICTED: hypothetical protein XP_002347695, parti...
LOC729218             0.115   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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