Guide to the Human Genome
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Name: LOC100288360 Sequence: fasta or formatted (188aa) NCBI GI: 239743200
Description:

PREDICTED: hypothetical protein XP_002342802

Not currently referenced in the text

Other entries for this name:
alt mRNA {188aa} PREDICTED: similar to Putative uncharacterized protein FLJ46235
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         21           1
 C cysteine            3.7          7           1
 D aspartate           0.0          0           0
 E glutamate           1.6          3           1
 F phenylalanine       1.6          3           1
 G glycine             9.6         18           2
 H histidine           1.1          2           1
 I isoleucine          0.5          1           1
 K lysine              1.6          3           1
 L leucine            14.9         28           2
 M methionine          1.1          2           1
 N asparagine          0.0          0           0
 P proline            16.5         31           2
 Q glutamine           5.9         11           2
 R arginine            5.9         11           1
 S serine             11.2         21           3
 T threonine           4.3          8           1
 V valine              6.4         12           2
 W tryptophan          3.2          6           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342802 
LOC100288360          1.000   PREDICTED: similar to Putative uncharacterized prot...
LOC100287093          0.959   PREDICTED: hypothetical protein XP_002342765 
LOC100287093          0.959   PREDICTED: similar to Putative uncharacterized prot...
LOC728417             0.160   PREDICTED: hypothetical protein 
LOC728417             0.160   PREDICTED: hypothetical protein 
LOC728417             0.160   PREDICTED: hypothetical protein isoform 1 
LOC100132062          0.155   PREDICTED: hypothetical protein 
LOC100132062          0.152   PREDICTED: hypothetical protein 
LOC100132287          0.152   PREDICTED: hypothetical protein 
LOC100133161          0.144   PREDICTED: hypothetical protein 
LOC731275             0.141   PREDICTED: hypothetical protein 
LOC728417             0.136   PREDICTED: hypothetical protein isoform 2 
LOC100293878          0.128   PREDICTED: similar to hCG1779533 
LOC100294359          0.122   PREDICTED: hypothetical protein 
LOC730826             0.122   PREDICTED: hypothetical protein 
LOC729737             0.120   PREDICTED: hypothetical protein 
LOC100129904          0.117   PREDICTED: hypothetical protein 
LOC100129904          0.117   PREDICTED: hypothetical protein 
LOC100129904          0.117   PREDICTED: hypothetical protein 
LOC100133331          0.117   PREDICTED: hypothetical protein 
LOC100129904          0.117   PREDICTED: hypothetical protein 
LOC729660             0.106   PREDICTED: similar to Putative uncharacterized prot...
LOC100287258          0.106   PREDICTED: hypothetical protein XP_002342766 
LOC100287258          0.106   PREDICTED: hypothetical protein 
LOC100288155          0.106   PREDICTED: hypothetical protein XP_002342801, parti...
LOC100288155          0.106   PREDICTED: hypothetical protein, partial 
LOC731275             0.103   PREDICTED: similar to Putative uncharacterized prot...
LOC100128326          0.101   PREDICTED: hypothetical protein 
LOC100128326          0.101   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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