Guide to the Human Genome
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Name: LOC100287930 Sequence: fasta or formatted (178aa) NCBI GI: 239752532
Description:

PREDICTED: similar to Putative uncharacterized protein FLJ46348, partial

Not currently referenced in the text

Other entries for this name:
alt prot {203aa} PREDICTED: similar to Putative uncharacterized protein FLJ46348
alt prot {203aa} PREDICTED: hypothetical protein XP_002342772
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         20           2
 C cysteine            3.9          7           1
 D aspartate           2.2          4           1
 E glutamate           0.0          0           0
 F phenylalanine       2.8          5           1
 G glycine            10.1         18           2
 H histidine           2.8          5           1
 I isoleucine          0.0          0           0
 K lysine              1.1          2           1
 L leucine            11.8         21           3
 M methionine          1.1          2           1
 N asparagine          0.0          0           0
 P proline            15.2         27           2
 Q glutamine           3.9          7           1
 R arginine            9.0         16           2
 S serine             16.3         29           3
 T threonine           1.7          3           1
 V valine              5.1          9           1
 W tryptophan          1.7          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Putative uncharacterized prot... 
LOC100287930          0.945   PREDICTED: hypothetical protein XP_002342772 
LOC100287930          0.945   PREDICTED: similar to Putative uncharacterized prot...
LOC729660             0.280   PREDICTED: similar to Putative uncharacterized prot...
LOC731275             0.234   PREDICTED: similar to Putative uncharacterized prot...
LOC729660             0.185   PREDICTED: similar to Putative uncharacterized prot...
LOC100292804          0.121   PREDICTED: similar to hCG1739112 
LOC100289693          0.121   PREDICTED: hypothetical protein XP_002347909 
LOC100293878          0.113   PREDICTED: similar to hCG1779533 
LOC100131871          0.110   PREDICTED: similar to hCG1779533 
LOC100131871          0.107   PREDICTED: similar to hCG1779533 
LOC100131871          0.107   PREDICTED: similar to hCG1779533 
LOC729737             0.098   PREDICTED: hypothetical protein 
LOC100287093          0.087   PREDICTED: hypothetical protein XP_002342765 
LOC100287093          0.087   PREDICTED: similar to Putative uncharacterized prot...
LOC100288360          0.087   PREDICTED: hypothetical protein XP_002342802 
LOC100288360          0.087   PREDICTED: similar to Putative uncharacterized prot...
LOC730826             0.075   PREDICTED: hypothetical protein 
LOC100288155          0.069   PREDICTED: hypothetical protein XP_002342801, parti...
LOC100288155          0.069   PREDICTED: hypothetical protein, partial 
LOC100287258          0.066   PREDICTED: hypothetical protein XP_002342766 
LOC100287258          0.066   PREDICTED: hypothetical protein 
LOC100128326          0.064   PREDICTED: hypothetical protein 
LOC100128326          0.064   PREDICTED: hypothetical protein 
LOC100128326          0.064   PREDICTED: hypothetical protein 
LOC100290352          0.061   PREDICTED: hypothetical protein XP_002347695, parti...
LOC100133331          0.058   PREDICTED: hypothetical protein 
LOC100129904          0.055   PREDICTED: hypothetical protein 
LOC728417             0.055   PREDICTED: hypothetical protein 
LOC100129904          0.055   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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