Guide to the Human Genome
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Name: LOC100131871 Sequence: fasta or formatted (213aa) NCBI GI: 239508809
Description:

PREDICTED: similar to hCG1779533

Not currently referenced in the text

Other entries for this name:
alt mRNA {213aa} PREDICTED: similar to hCG1779533
alt prot {212aa} PREDICTED: similar to hCG1779533
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         19           2
 C cysteine            2.8          6           1
 D aspartate           1.9          4           1
 E glutamate           1.9          4           1
 F phenylalanine       5.6         12           2
 G glycine             4.2          9           1
 H histidine           2.3          5           1
 I isoleucine          1.9          4           2
 K lysine              1.4          3           1
 L leucine            14.1         30           2
 M methionine          0.9          2           1
 N asparagine          1.4          3           1
 P proline            15.5         33           2
 Q glutamine           7.5         16           2
 R arginine            5.2         11           1
 S serine             11.3         24           2
 T threonine           5.6         12           1
 V valine              3.8          8           1
 W tryptophan          1.4          3           1
 Y tyrosine            2.3          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1779533 
LOC100131871          1.000   PREDICTED: similar to hCG1779533 
LOC100131871          0.883   PREDICTED: similar to hCG1779533 
LOC729737             0.814   PREDICTED: hypothetical protein 
LOC100293878          0.573   PREDICTED: similar to hCG1779533 
LOC100294359          0.453   PREDICTED: hypothetical protein 
LOC100129904          0.434   PREDICTED: hypothetical protein 
LOC100129904          0.434   PREDICTED: hypothetical protein 
LOC100129904          0.434   PREDICTED: hypothetical protein 
LOC100129904          0.434   PREDICTED: hypothetical protein 
LOC728417             0.432   PREDICTED: hypothetical protein 
LOC728417             0.432   PREDICTED: hypothetical protein 
LOC728417             0.432   PREDICTED: hypothetical protein isoform 2 
LOC728417             0.432   PREDICTED: hypothetical protein isoform 1 
LOC644794             0.131   PREDICTED: hypothetical protein 
LOC644794             0.131   PREDICTED: hypothetical protein 
LOC644794             0.131   PREDICTED: hypothetical protein 
LOC644794             0.131   PREDICTED: hypothetical protein 
LOC100128326          0.122   PREDICTED: hypothetical protein 
LOC100128326          0.122   PREDICTED: hypothetical protein 
LOC100132062          0.119   PREDICTED: hypothetical protein 
LOC100128326          0.119   PREDICTED: hypothetical protein 
LOC100133331          0.119   PREDICTED: hypothetical protein 
LOC100134105          0.117   PREDICTED: similar to hCG1793472 
LOC100132062          0.115   PREDICTED: hypothetical protein 
LOC100132287          0.115   PREDICTED: hypothetical protein 
LOC100133161          0.112   PREDICTED: hypothetical protein 
LOC100287258          0.110   PREDICTED: hypothetical protein XP_002342766 
LOC100287258          0.110   PREDICTED: hypothetical protein 
LOC100292804          0.107   PREDICTED: similar to hCG1739112 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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