Guide to the Human Genome
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Name: LOC728417 Sequence: fasta or formatted (352aa) NCBI GI: 239741468
Description:

PREDICTED: hypothetical protein isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {211aa} PREDICTED: hypothetical protein isoform 2
alt prot {352aa} PREDICTED: hypothetical protein
alt prot {352aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         36           2
 C cysteine            2.0          7           1
 D aspartate           1.1          4           1
 E glutamate           0.3          1           1
 F phenylalanine       3.7         13           1
 G glycine             5.7         20           2
 H histidine           3.4         12           1
 I isoleucine          0.6          2           1
 K lysine              2.0          7           1
 L leucine            15.1         53           3
 M methionine          1.4          5           1
 N asparagine          2.3          8           1
 P proline            14.5         51           2
 Q glutamine           9.1         32           2
 R arginine            3.4         12           1
 S serine             14.2         50           3
 T threonine           5.4         19           1
 V valine              2.3          8           1
 W tryptophan          2.6          9           2
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein isoform 1 
LOC728417             0.997   PREDICTED: hypothetical protein 
LOC728417             0.997   PREDICTED: hypothetical protein 
LOC729737             0.798   PREDICTED: hypothetical protein 
LOC728417             0.540   PREDICTED: hypothetical protein isoform 2 
LOC100294359          0.520   PREDICTED: hypothetical protein 
LOC100129904          0.483   PREDICTED: hypothetical protein 
LOC100129904          0.483   PREDICTED: hypothetical protein 
LOC100129904          0.483   PREDICTED: hypothetical protein 
LOC100129904          0.483   PREDICTED: hypothetical protein 
LOC100132062          0.328   PREDICTED: hypothetical protein 
LOC100132062          0.320   PREDICTED: hypothetical protein 
LOC100132287          0.320   PREDICTED: hypothetical protein 
LOC100133161          0.317   PREDICTED: hypothetical protein 
LOC731275             0.298   PREDICTED: hypothetical protein 
LOC729218             0.271   PREDICTED: hypothetical protein 
LOC100131871          0.257   PREDICTED: similar to hCG1779533 
LOC100131871          0.257   PREDICTED: similar to hCG1779533 
LOC100131871          0.257   PREDICTED: similar to hCG1779533 
LOC100132050          0.251   PREDICTED: similar to hCG1779533 
LOC100132050          0.251   PREDICTED: similar to hCG1779533 
LOC100292470          0.247   PREDICTED: similar to hCG1779533 
LOC100128326          0.220   PREDICTED: hypothetical protein 
LOC100128326          0.220   PREDICTED: hypothetical protein 
LOC100133331          0.219   PREDICTED: hypothetical protein 
LOC100128326          0.214   PREDICTED: hypothetical protein 
LOC100293878          0.183   PREDICTED: similar to hCG1779533 
LOC730826             0.183   PREDICTED: hypothetical protein 
LOC100287258          0.180   PREDICTED: hypothetical protein XP_002342766 
LOC100287258          0.180   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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