Guide to the Human Genome
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Name: LOC729218 Sequence: fasta or formatted (175aa) NCBI GI: 239742380
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         17           1
 C cysteine            3.4          6           1
 D aspartate           1.7          3           1
 E glutamate           0.0          0           0
 F phenylalanine       4.6          8           2
 G glycine             7.4         13           2
 H histidine           5.7         10           1
 I isoleucine          0.6          1           1
 K lysine              2.9          5           1
 L leucine            14.9         26           3
 M methionine          1.1          2           1
 N asparagine          3.4          6           1
 P proline            12.0         21           1
 Q glutamine           6.9         12           1
 R arginine            4.0          7           1
 S serine             14.9         26           3
 T threonine           4.0          7           1
 V valine              1.1          2           1
 W tryptophan          1.1          2           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132050          0.798   PREDICTED: similar to hCG1779533 
LOC100132050          0.798   PREDICTED: similar to hCG1779533 
LOC100292470          0.792   PREDICTED: similar to hCG1779533 
LOC728417             0.558   PREDICTED: hypothetical protein 
LOC728417             0.558   PREDICTED: hypothetical protein 
LOC728417             0.558   PREDICTED: hypothetical protein isoform 1 
LOC729737             0.544   PREDICTED: hypothetical protein 
LOC100293878          0.237   PREDICTED: similar to hCG1779533 
LOC730826             0.199   PREDICTED: hypothetical protein 
LOC100287258          0.193   PREDICTED: hypothetical protein XP_002342766 
LOC100287258          0.193   PREDICTED: hypothetical protein 
LOC100133161          0.190   PREDICTED: hypothetical protein 
LOC100132062          0.187   PREDICTED: hypothetical protein 
LOC100132287          0.187   PREDICTED: hypothetical protein 
LOC100132062          0.187   PREDICTED: hypothetical protein 
LOC100128326          0.178   PREDICTED: hypothetical protein 
LOC100128326          0.178   PREDICTED: hypothetical protein 
LOC100128326          0.178   PREDICTED: hypothetical protein 
LOC100288155          0.173   PREDICTED: hypothetical protein XP_002342801, parti...
LOC100288155          0.173   PREDICTED: hypothetical protein, partial 
LOC100133331          0.167   PREDICTED: hypothetical protein 
LOC731275             0.152   PREDICTED: hypothetical protein 
LOC100290352          0.143   PREDICTED: hypothetical protein XP_002347695, parti...
LOC728417             0.140   PREDICTED: hypothetical protein isoform 2 
LOC100129904          0.137   PREDICTED: hypothetical protein 
LOC100129904          0.137   PREDICTED: hypothetical protein 
LOC100129904          0.137   PREDICTED: hypothetical protein 
LOC100129904          0.137   PREDICTED: hypothetical protein 
LOC100294359          0.135   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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