Guide to the Human Genome
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Name: LOC100287093 Sequence: fasta or formatted (188aa) NCBI GI: 239508824
Description:

PREDICTED: similar to Putative uncharacterized protein FLJ46235

Not currently referenced in the text

Other entries for this name:
alt mRNA {188aa} PREDICTED: hypothetical protein XP_002342765
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         23           2
 C cysteine            4.3          8           1
 D aspartate           0.0          0           0
 E glutamate           1.6          3           1
 F phenylalanine       1.6          3           1
 G glycine             8.5         16           2
 H histidine           0.5          1           1
 I isoleucine          0.5          1           1
 K lysine              1.6          3           1
 L leucine            14.9         28           2
 M methionine          1.1          2           1
 N asparagine          0.0          0           0
 P proline            16.5         31           2
 Q glutamine           5.9         11           2
 R arginine            6.9         13           1
 S serine             11.2         21           3
 T threonine           4.3          8           1
 V valine              5.9         11           2
 W tryptophan          2.7          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Putative uncharacterized prot... 
LOC100287093          1.000   PREDICTED: hypothetical protein XP_002342765 
LOC100288360          0.967   PREDICTED: hypothetical protein XP_002342802 
LOC100288360          0.967   PREDICTED: similar to Putative uncharacterized prot...
LOC100132062          0.162   PREDICTED: hypothetical protein 
LOC100132062          0.159   PREDICTED: hypothetical protein 
LOC100132287          0.159   PREDICTED: hypothetical protein 
LOC100133161          0.151   PREDICTED: hypothetical protein 
LOC731275             0.148   PREDICTED: hypothetical protein 
LOC728417             0.145   PREDICTED: hypothetical protein 
LOC728417             0.145   PREDICTED: hypothetical protein 
LOC728417             0.145   PREDICTED: hypothetical protein isoform 1 
LOC100293878          0.137   PREDICTED: similar to hCG1779533 
LOC728417             0.134   PREDICTED: hypothetical protein isoform 2 
LOC730826             0.126   PREDICTED: hypothetical protein 
LOC100294359          0.121   PREDICTED: hypothetical protein 
LOC729737             0.118   PREDICTED: hypothetical protein 
LOC100129904          0.112   PREDICTED: hypothetical protein 
LOC100129904          0.112   PREDICTED: hypothetical protein 
LOC100287258          0.112   PREDICTED: hypothetical protein XP_002342766 
LOC100129904          0.112   PREDICTED: hypothetical protein 
LOC100287258          0.112   PREDICTED: hypothetical protein 
LOC100129904          0.112   PREDICTED: hypothetical protein 
LOC100288155          0.110   PREDICTED: hypothetical protein XP_002342801, parti...
LOC100288155          0.110   PREDICTED: hypothetical protein, partial 
LOC100128326          0.107   PREDICTED: hypothetical protein 
LOC100128326          0.107   PREDICTED: hypothetical protein 
LOC100128326          0.107   PREDICTED: hypothetical protein 
LOC731275             0.104   PREDICTED: similar to Putative uncharacterized prot...
LOC100292804          0.101   PREDICTED: similar to hCG1739112 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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