Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC729737 Sequence: fasta or formatted (389aa) NCBI GI: 239740972
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         38           2
 C cysteine            2.6         10           1
 D aspartate           1.3          5           1
 E glutamate           0.5          2           1
 F phenylalanine       4.6         18           2
 G glycine             5.4         21           2
 H histidine           2.3          9           2
 I isoleucine          0.5          2           1
 K lysine              1.8          7           1
 L leucine            14.4         56           3
 M methionine          0.8          3           1
 N asparagine          2.3          9           1
 P proline            15.4         60           2
 Q glutamine           9.3         36           2
 R arginine            4.9         19           1
 S serine             12.6         49           3
 T threonine           5.9         23           1
 V valine              2.6         10           1
 W tryptophan          2.3          9           2
 Y tyrosine            0.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728417             0.719   PREDICTED: hypothetical protein 
LOC728417             0.719   PREDICTED: hypothetical protein 
LOC728417             0.717   PREDICTED: hypothetical protein isoform 1 
LOC100131871          0.436   PREDICTED: similar to hCG1779533 
LOC100131871          0.435   PREDICTED: similar to hCG1779533 
LOC100131871          0.435   PREDICTED: similar to hCG1779533 
LOC100293878          0.361   PREDICTED: similar to hCG1779533 
LOC100294359          0.351   PREDICTED: hypothetical protein 
LOC728417             0.335   PREDICTED: hypothetical protein isoform 2 
LOC100129904          0.323   PREDICTED: hypothetical protein 
LOC100129904          0.323   PREDICTED: hypothetical protein 
LOC100129904          0.323   PREDICTED: hypothetical protein 
LOC100129904          0.323   PREDICTED: hypothetical protein 
LOC729218             0.237   PREDICTED: hypothetical protein 
LOC100292470          0.223   PREDICTED: similar to hCG1779533 
LOC100132050          0.219   PREDICTED: similar to hCG1779533 
LOC100132050          0.219   PREDICTED: similar to hCG1779533 
LOC100132062          0.182   PREDICTED: hypothetical protein 
LOC100132062          0.172   PREDICTED: hypothetical protein 
LOC100132287          0.172   PREDICTED: hypothetical protein 
LOC100133161          0.172   PREDICTED: hypothetical protein 
LOC731275             0.148   PREDICTED: hypothetical protein 
LOC100128326          0.080   PREDICTED: hypothetical protein 
LOC100128326          0.080   PREDICTED: hypothetical protein 
LOC100128326          0.080   PREDICTED: hypothetical protein 
LOC100133331          0.079   PREDICTED: hypothetical protein 
LOC100292804          0.078   PREDICTED: similar to hCG1739112 
LOC100289693          0.078   PREDICTED: hypothetical protein XP_002347909 
LOC730826             0.075   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press