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Search of human proteins with 239049118
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239049118 linker for activation of T cells isoform d [Homo
sapiens]
(269 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239049118 linker for activation of T cells isoform d [Homo sa... 546 e-156
gi|62739155 linker for activation of T cells isoform b [Homo sap... 477 e-135
gi|62739157 linker for activation of T cells isoform c [Homo sap... 470 e-133
gi|7657293 linker for activation of T cells isoform a [Homo sapi... 461 e-130
gi|33946327 nucleoporin 214kDa [Homo sapiens] 40 0.002
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 40 0.002
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 39 0.004
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 38 0.008
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 38 0.008
gi|21359951 RNA binding motif protein 42 [Homo sapiens] 37 0.018
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 37 0.024
gi|55956788 nucleolin [Homo sapiens] 36 0.031
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 36 0.040
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 35 0.053
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 35 0.053
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 35 0.053
gi|50345997 E1A binding protein p300 [Homo sapiens] 35 0.069
gi|4505463 contactin associated protein 1 precursor [Homo sapiens] 35 0.069
gi|41872448 ELK4 protein isoform a [Homo sapiens] 35 0.069
gi|62000702 diacylglycerol kinase kappa [Homo sapiens] 35 0.069
gi|14602439 Williams Beuren syndrome chromosome region 14 isofor... 34 0.12
gi|14602437 Williams Beuren syndrome chromosome region 14 isofor... 34 0.12
gi|14602435 Williams Beuren syndrome chromosome region 14 isofor... 34 0.12
gi|14602433 Williams Beuren syndrome chromosome region 14 isofor... 34 0.12
gi|149363685 hypothetical protein LOC23379 [Homo sapiens] 34 0.12
gi|239752265 PREDICTED: hypothetical protein XP_002348186 [Homo ... 34 0.12
gi|11496882 ELK4 protein isoform b [Homo sapiens] 34 0.12
gi|156119601 spermatogenesis and oogenesis specific basic helix-... 34 0.12
gi|37537554 hypothetical protein FLJ37538 [Homo sapiens] 34 0.12
gi|33350928 disabled homolog 1 [Homo sapiens] 34 0.15
>gi|239049118 linker for activation of T cells isoform d [Homo
sapiens]
Length = 269
Score = 546 bits (1406), Expect = e-156
Identities = 269/269 (100%), Positives = 269/269 (100%)
Query: 1 MEATAASWQVAVPVLGGASRPLGPRGAASLLRAPLQMEEAILVPCVLGLLLLPILAMLMA 60
MEATAASWQVAVPVLGGASRPLGPRGAASLLRAPLQMEEAILVPCVLGLLLLPILAMLMA
Sbjct: 1 MEATAASWQVAVPVLGGASRPLGPRGAASLLRAPLQMEEAILVPCVLGLLLLPILAMLMA 60
Query: 61 LCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQPDLLPIPRS 120
LCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQPDLLPIPRS
Sbjct: 61 LCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQPDLLPIPRS 120
Query: 121 PQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATS 180
PQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATS
Sbjct: 121 PQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATS 180
Query: 181 TAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAK 240
TAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAK
Sbjct: 181 TAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAK 240
Query: 241 TEPAALSSQEAEEVEEEGAPDYENLQELN 269
TEPAALSSQEAEEVEEEGAPDYENLQELN
Sbjct: 241 TEPAALSSQEAEEVEEEGAPDYENLQELN 269
>gi|62739155 linker for activation of T cells isoform b [Homo
sapiens]
Length = 233
Score = 477 bits (1227), Expect = e-135
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 37 MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 96
MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW
Sbjct: 1 MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 60
Query: 97 PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDA 156
PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDA
Sbjct: 61 PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDA 120
Query: 157 DEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGES 216
DEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGES
Sbjct: 121 DEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGES 180
Query: 217 AEASLDGSREYVNVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDYENLQELN 269
AEASLDGSREYVNVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDYENLQELN
Sbjct: 181 AEASLDGSREYVNVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDYENLQELN 233
>gi|62739157 linker for activation of T cells isoform c [Homo
sapiens]
Length = 232
Score = 470 bits (1210), Expect = e-133
Identities = 232/233 (99%), Positives = 232/233 (99%), Gaps = 1/233 (0%)
Query: 37 MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 96
MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW
Sbjct: 1 MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 60
Query: 97 PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDA 156
PPAYPPVTSYPPLSQPDLLPIP SPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDA
Sbjct: 61 PPAYPPVTSYPPLSQPDLLPIP-SPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDA 119
Query: 157 DEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGES 216
DEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGES
Sbjct: 120 DEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGES 179
Query: 217 AEASLDGSREYVNVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDYENLQELN 269
AEASLDGSREYVNVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDYENLQELN
Sbjct: 180 AEASLDGSREYVNVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDYENLQELN 232
>gi|7657293 linker for activation of T cells isoform a [Homo
sapiens]
Length = 262
Score = 461 bits (1187), Expect = e-130
Identities = 233/262 (88%), Positives = 233/262 (88%), Gaps = 29/262 (11%)
Query: 37 MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 96
MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW
Sbjct: 1 MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 60
Query: 97 PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENE------- 149
PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENE
Sbjct: 61 PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEGASGIRG 120
Query: 150 ----------------------EPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAP 187
EPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAP
Sbjct: 121 AQAGWGVWGPSWTRLTPVSLPPEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAP 180
Query: 188 ALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAALS 247
ALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAALS
Sbjct: 181 ALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAALS 240
Query: 248 SQEAEEVEEEGAPDYENLQELN 269
SQEAEEVEEEGAPDYENLQELN
Sbjct: 241 SQEAEEVEEEGAPDYENLQELN 262
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 40.4 bits (93), Expect = 0.002
Identities = 48/200 (24%), Positives = 69/200 (34%), Gaps = 34/200 (17%)
Query: 71 SYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQPDLLPIPRSPQ-PLGGSHR 129
S+ S ++S P P P A P TS+P LS LL +P P+
Sbjct: 1440 SFGSQQTNSTVP-------PSAPPPTTAATPLPTSFPTLSFGSLLSSATTPSLPMSAGRS 1492
Query: 130 T--------PSSRRDSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATST 181
T P DS+ + S AS E+ + + LP + P TS
Sbjct: 1493 TEEATSSALPEKPGDSEVSASAASLLEEQQSAQ-----------------LPQAPPQTSD 1535
Query: 182 AAPSAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELH-PGAAK 240
+ P L+ P + +S + S E+ + D E V + PG
Sbjct: 1536 SVKKEPVLAQPAVSNSGTAASSTSLVALSAEATPATTGVPDARTEAVPPASSFSVPGQTA 1595
Query: 241 TEPAALSSQEAEEVEEEGAP 260
AA+SS VE P
Sbjct: 1596 VTAAAISSAGPVAVETSSTP 1615
Score = 35.0 bits (79), Expect = 0.069
Identities = 50/185 (27%), Positives = 71/185 (38%), Gaps = 11/185 (5%)
Query: 69 PGSYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQPDLLPIPRSPQPLG-GS 127
PGS +T + S P+ K + A P + PP + P++ LLP +P GS
Sbjct: 431 PGSTPTTPTSSQAPQ----KLDASAAAAPASLPPSSPAAPIATFSLLPAGGAPTVFSFGS 486
Query: 128 HRTPSSRRDSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAP 187
SS + S +S + A + P + P TPA S APSA
Sbjct: 487 SSLKSSATVTGEPPSYSSGSDSSKAAPGPGPSTFSFVPPSKASLAP--TPAASPVAPSAA 544
Query: 188 ALSTPGIRDSAFSMESID-DYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAAL 246
+ S G ++ES V+ P S VN+S++ AA T
Sbjct: 545 SFSF-GSSGFKPTLESTPVPSVSAPNIAMKPSFPPSTSAVKVNLSEKF--TAAATSTPVS 601
Query: 247 SSQEA 251
SSQ A
Sbjct: 602 SSQSA 606
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 40.0 bits (92), Expect = 0.002
Identities = 41/168 (24%), Positives = 62/168 (36%), Gaps = 29/168 (17%)
Query: 101 PPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDADEDE 160
P VT+ P +P P QP+GG + + + DS + +S EE +
Sbjct: 391 PAVTTKSPAVKPAAAP----KQPVGGGQKLLTRKADSSSSEEESSSSEEEKTKK------ 440
Query: 161 DDYHNPGYLVVLPDSTPATSTAAPSAPALSTP-GIRDSAFSMESIDDYVNVPESGESAEA 219
+V AT+ AA S PA P G RDS+ +S S E
Sbjct: 441 ---------MVATTKPKATAKAALSLPAKQAPQGSRDSSSDSDS---------SSSEEEE 482
Query: 220 SLDGSREYVNVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDYENLQE 267
Q++ GAA ++PA+ +AE + D +E
Sbjct: 483 EKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEEE 530
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 39.3 bits (90), Expect = 0.004
Identities = 50/200 (25%), Positives = 77/200 (38%), Gaps = 36/200 (18%)
Query: 90 PHTVAPWPPAYP-------------PVTSYPP---LSQPDLLPIPRSPQPLGGSH----R 129
P +P PPA+ P TS P ++ P P P+ + S R
Sbjct: 2393 PPQPSPAPPAFTSCPAPEPFAELPAPATSLAPAPLITMPATRPKPKKARAAEESGAKGPR 2452
Query: 130 TPSS------RRDSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAA 183
P + D +G S S + +E D + P L+ L PA ++
Sbjct: 2453 RPGEEAELLVKLDHEGVTSPKSKKAKEALLLREDPGAGGWQEPKSLLSLGSYPPAAGSSE 2512
Query: 184 PSAPALSTPGIRDSAFSME-----SIDDYVNVPESGESAEASLDGSREYVNVSQELHPGA 238
P AP P D + E + +D N P+S + A+A DG+ E + S G+
Sbjct: 2513 PKAP---WPKATDGDLAQEPGPGLTFEDSGN-PKSPDKAQAEQDGAEESES-SSSSSSGS 2567
Query: 239 AKTEPAALSSQEAEEVEEEG 258
+ + ++ SS E EEEG
Sbjct: 2568 SSSSSSSSSSGSETEGEEEG 2587
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 38.1 bits (87), Expect = 0.008
Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 6/143 (4%)
Query: 71 SYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVT-SYPPLSQPDLLPIPRSPQPLGGSHR 129
SY T +++ + + P T+ P PP PP+T PP P+ +P L +
Sbjct: 1135 SYTDTYTEAYMVPPLPPEEPPTMPPLPPEEPPMTPPLPPEEPPEGPALPTEQSALTAENT 1194
Query: 130 TPSSRRDSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAPAL 189
P+ S SV+ EP ++ E Y V D + S AA + P
Sbjct: 1195 WPTEVPSSPSEESVS---QPEPPVSQSEISEPSAVPTDYSVSASDPSVLVSEAAVTVP-- 1249
Query: 190 STPGIRDSAFSMESIDDYVNVPE 212
P +S+ ++ ++ V E
Sbjct: 1250 EPPPEPESSITLTPVESAVVAEE 1272
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 38.1 bits (87), Expect = 0.008
Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 6/143 (4%)
Query: 71 SYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVT-SYPPLSQPDLLPIPRSPQPLGGSHR 129
SY T +++ + + P T+ P PP PP+T PP P+ +P L +
Sbjct: 1135 SYTDTYTEAYMVPPLPPEEPPTMPPLPPEEPPMTPPLPPEEPPEGPALPTEQSALTAENT 1194
Query: 130 TPSSRRDSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAPAL 189
P+ S SV+ EP ++ E Y V D + S AA + P
Sbjct: 1195 WPTEVPSSPSEESVS---QPEPPVSQSEISEPSAVPTDYSVSASDPSVLVSEAAVTVP-- 1249
Query: 190 STPGIRDSAFSMESIDDYVNVPE 212
P +S+ ++ ++ V E
Sbjct: 1250 EPPPEPESSITLTPVESAVVAEE 1272
>gi|21359951 RNA binding motif protein 42 [Homo sapiens]
Length = 480
Score = 37.0 bits (84), Expect = 0.018
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 5/127 (3%)
Query: 1 MEATAASWQVAVPVLGGASRPLGPRGAASLLRAPLQMEEAILVPCVLGLLLLPILAMLMA 60
+EA AA+ VP + G +GP G R+ L EA + + P A ++
Sbjct: 99 LEARAAAAATVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILR 158
Query: 61 LCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQPDLLPIPRS 120
H L + + SS + PR + + PH PP P PP+ P P+ R+
Sbjct: 159 PAFVPHVLQRADSALSSAAAGPRPMALRPPHQALVGPPL--PGPPGPPMMLP---PMARA 213
Query: 121 PQPLGGS 127
P P GS
Sbjct: 214 PGPPLGS 220
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 36.6 bits (83), Expect = 0.024
Identities = 39/172 (22%), Positives = 57/172 (33%), Gaps = 14/172 (8%)
Query: 94 APWPPAYPPVT-SYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEEPA 152
+P P+Y P + SY P S P+ P + P S+ S N + N P
Sbjct: 1728 SPTSPSYSPTSPSYSPTS-PNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPT 1786
Query: 153 CEDADEDEDDYH--NPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNV 210
Y +P Y P TP + T PS+P+ S S S
Sbjct: 1787 SPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTS---------- 1836
Query: 211 PESGESAEASLDGSREYVNVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDY 262
P+ ++ + S EY S + P + K P + P Y
Sbjct: 1837 PKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKY 1888
Score = 32.0 bits (71), Expect = 0.58
Identities = 36/166 (21%), Positives = 53/166 (31%), Gaps = 7/166 (4%)
Query: 97 PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDA 156
P A + + P P P P SP GS S S G SY PA E
Sbjct: 1548 PSAASDASGFSPGYSPAWSPTPGSP----GSPGPSSPYIPSPGGAMSPSYSPTSPAYEPR 1603
Query: 157 DEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGES 216
+P Y P +P + + +P++P S ++S S P +
Sbjct: 1604 SPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSP---TSPSYSPTSPSYSPTSPSYSPT 1660
Query: 217 AEASLDGSREYVNVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDY 262
+ + S Y S P + P + S +P Y
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1706
Score = 30.8 bits (68), Expect = 1.3
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Query: 94 APWPPAYPPVT-SYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEEPA 152
+P P+Y P + SY P S P P S P S+ S + + + P
Sbjct: 1672 SPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1730
Query: 153 CEDADEDEDDYH--NPGYLVVLPDSTPATSTAAPSAPALS 190
Y +P Y P+ TP + + +P++P+ S
Sbjct: 1731 SPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYS 1770
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 36.2 bits (82), Expect = 0.031
Identities = 36/140 (25%), Positives = 52/140 (37%), Gaps = 25/140 (17%)
Query: 125 GGSHRTPSSRRDSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAP 184
G + + + DSD S E+EE ED DEDED+ PA AA
Sbjct: 133 GAKNGKNAKKEDSDEEEDDDSEEDEEDD-EDEDEDEDEIE------------PAAMKAAA 179
Query: 185 SAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPA 244
+APA E DD + + + + D E + + AAK P
Sbjct: 180 AAPA------------SEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPV 227
Query: 245 ALSSQEAEEVEEEGAPDYEN 264
+ +E EEE D ++
Sbjct: 228 KAKNVAEDEDEEEDDEDEDD 247
Score = 33.1 bits (74), Expect = 0.26
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 175 STPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNV------PESGESAEASLDGSREYV 228
+TP A P ++TPG + +A + + N E + +E + +
Sbjct: 105 TTPGKKGATPGKALVATPGKKGAAIPAKGAKNGKNAKKEDSDEEEDDDSEEDEEDDEDED 164
Query: 229 NVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDYENLQE 267
E+ P A K AA +S++ ++ ++E D ++ +E
Sbjct: 165 EDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEE 203
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 35.8 bits (81), Expect = 0.040
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 12/137 (8%)
Query: 136 DSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIR 195
+SDG + + E + A + E E + H V D+ A A P + + P
Sbjct: 2051 ESDGVEAPEAEEEAQEAEGEVQEAEGEAHPESEDV---DAQEAEGEAQPESEGVEAPEAE 2107
Query: 196 DSAFSMESID----DYVNVPESG--ESAEASLDGSREYVNVSQELHPGAAKTEPAALSSQ 249
A E I+ + PES E+ EA + E V + G A+ E + +Q
Sbjct: 2108 GEAQKAEGIEAPETEGEAQPESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQ 2167
Query: 250 EAEEVEEEGAPDYENLQ 266
EA EEE P+ E ++
Sbjct: 2168 EA---EEEAQPELEGVE 2181
Score = 33.9 bits (76), Expect = 0.15
Identities = 42/150 (28%), Positives = 59/150 (39%), Gaps = 18/150 (12%)
Query: 122 QPLGGSHRTPSSRRDSDGANSVASYENEEPACEDAD-----EDEDDYHNPGYLVVLPDST 176
QP P + D+ A A E+E+ +A+ E ED V P+S
Sbjct: 1845 QPESEGVEAPEAEGDAQEAEGEAQPESEDVEAPEAEGEAQPESEDVETPEAEWEVQPESE 1904
Query: 177 PATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHP 236
A + A T + A E D+ PES E AEA +E +QE
Sbjct: 1905 GAEAPEAEKEAQPETESVE--ALETEGEDE----PES-EGAEA-----QEAEEAAQEAE- 1951
Query: 237 GAAKTEPAALSSQEAEEVEEEGAPDYENLQ 266
G + E + SQEAEE + + D E L+
Sbjct: 1952 GQTQPESEVIESQEAEEEAQPESEDVEALE 1981
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 35.4 bits (80), Expect = 0.053
Identities = 38/150 (25%), Positives = 48/150 (32%), Gaps = 37/150 (24%)
Query: 90 PHTVAPWPPAYPPV-------------TSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRD 136
P P PPA PP+ T P S P L P P P P + P RD
Sbjct: 404 PPPAPPLPPAAPPLPCAQKAAHPPAGFTKTPKSSSPALKPKPNPPSPENTASSAPVDWRD 463
Query: 137 SDG----ANSVASYENEEPACEDADEDEDDYHNPGYLVV-----------LPDSTPATST 181
N +A+Y C ED H PG V LP+ S
Sbjct: 464 PSQMEKLRNELAAY-----LCGSRREDRFLSHRPGPTVAPQSKEGKKGPRLPEKETLLSL 518
Query: 182 AAPSAPALSTPGIRDSAFSMESIDDYVNVP 211
A P PG+ + + S+ + P
Sbjct: 519 PAKDTP----PGVPEKSLGGSSLTETEAAP 544
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 35.4 bits (80), Expect = 0.053
Identities = 38/150 (25%), Positives = 48/150 (32%), Gaps = 37/150 (24%)
Query: 90 PHTVAPWPPAYPPV-------------TSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRD 136
P P PPA PP+ T P S P L P P P P + P RD
Sbjct: 404 PPPAPPLPPAAPPLPCAQKAAHPPAGFTKTPKSSSPALKPKPNPPSPENTASSAPVDWRD 463
Query: 137 SDG----ANSVASYENEEPACEDADEDEDDYHNPGYLVV-----------LPDSTPATST 181
N +A+Y C ED H PG V LP+ S
Sbjct: 464 PSQMEKLRNELAAY-----LCGSRREDRFLSHRPGPTVAPQSKEGKKGPRLPEKETLLSL 518
Query: 182 AAPSAPALSTPGIRDSAFSMESIDDYVNVP 211
A P PG+ + + S+ + P
Sbjct: 519 PAKDTP----PGVPEKSLGGSSLTETEAAP 544
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 35.4 bits (80), Expect = 0.053
Identities = 38/150 (25%), Positives = 48/150 (32%), Gaps = 37/150 (24%)
Query: 90 PHTVAPWPPAYPPV-------------TSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRD 136
P P PPA PP+ T P S P L P P P P + P RD
Sbjct: 404 PPPAPPLPPAAPPLPCAQKAAHPPAGFTKTPKSSSPALKPKPNPPSPENTASSAPVDWRD 463
Query: 137 SDG----ANSVASYENEEPACEDADEDEDDYHNPGYLVV-----------LPDSTPATST 181
N +A+Y C ED H PG V LP+ S
Sbjct: 464 PSQMEKLRNELAAY-----LCGSRREDRFLSHRPGPTVAPQSKEGKKGPRLPEKETLLSL 518
Query: 182 AAPSAPALSTPGIRDSAFSMESIDDYVNVP 211
A P PG+ + + S+ + P
Sbjct: 519 PAKDTP----PGVPEKSLGGSSLTETEAAP 544
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 35.0 bits (79), Expect = 0.069
Identities = 54/227 (23%), Positives = 77/227 (33%), Gaps = 45/227 (19%)
Query: 63 VHCHRLPGSYDSTSSDSLYPR------------GIQFKRPHTVAPWPPAYPPVTSYPPLS 110
+HC +LP +S S P G Q + P T P P PP + PP
Sbjct: 817 IHCPQLPQPALHQNSPSPVPSRTPTPHHTPPSIGAQ-QPPATTIPAPVPTPP--AMPPGP 873
Query: 111 QPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDADEDEDDYHNPGYLV 170
Q L P P + + P + S PA AD+ + +
Sbjct: 874 QSQALHPPPRQTPTPPTTQLPQQVQPS------------LPAAPSADQPQQQPRS----- 916
Query: 171 VLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNV 230
+ A S P+AP L + SI+ V+ P S S E + E
Sbjct: 917 ---QQSTAASVPTPTAPLLPPQPATPLSQPAVSIEGQVSNPPSTSSTEVNSQAIAE-KQP 972
Query: 231 SQEL---------HPGAAKTEPAALSSQEAEEVEEEGAPDYENLQEL 268
SQE+ P A T+P +S + E+ + E E EL
Sbjct: 973 SQEVKMEAKMEVDQPEPADTQPEDISESKVEDCKMESTETEERSTEL 1019
>gi|4505463 contactin associated protein 1 precursor [Homo sapiens]
Length = 1384
Score = 35.0 bits (79), Expect = 0.069
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 40 AILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPWP-- 97
AIL+ ++ LLL ++ ML+ + HR GSY + P+ P + P P
Sbjct: 1283 AILLGFLVAFLLLGLVGMLVLFYLQNHRYKGSYHTNE-----PKAAHEYHPGSKPPLPTS 1337
Query: 98 -PAYPPVTSYPPLSQPDLLPIPR-SPQPLGG 126
PA P + P P P P +P P G
Sbjct: 1338 GPAQVPTPTAAPNQAPASAPAPAPTPAPAPG 1368
>gi|41872448 ELK4 protein isoform a [Homo sapiens]
Length = 431
Score = 35.0 bits (79), Expect = 0.069
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 101 PPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDADE-- 158
PP++S PPL +P PR+P P SH + DS + + EN +D D
Sbjct: 253 PPISSIPPLQEP-----PRTPSPPLSSHPDIDTDIDSVASQPMELPENLSLEPKDQDSVL 307
Query: 159 -DEDDYHN------PGYLVVLPDSTPATSTAAP---SAPALSTPGIRDSAFSMESI 204
++D +N P L + P +S +P +P+L T + + FS I
Sbjct: 308 LEKDKVNNSSRSKKPKGLELAPTLVITSSDPSPLGILSPSLPTASLTPAFFSQTPI 363
>gi|62000702 diacylglycerol kinase kappa [Homo sapiens]
Length = 1271
Score = 35.0 bits (79), Expect = 0.069
Identities = 31/105 (29%), Positives = 39/105 (37%), Gaps = 12/105 (11%)
Query: 90 PHTVAPWPPAYPPVT---SYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASY 146
P PWPP PP + P LS+ PI P+P P S+ A + +
Sbjct: 24 PEPPPPWPPPPPPPAPPPAPPLLSEASPEPI---PEPCPELAPGPCPEATSESATELYTE 80
Query: 147 ENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALST 191
EPA E A E + P PAT A AP +T
Sbjct: 81 PTPEPATEPASEPAPE------PATEPAPEPATEPAPEPAPEPAT 119
>gi|14602439 Williams Beuren syndrome chromosome region 14 isoform
delta [Homo sapiens]
Length = 831
Score = 34.3 bits (77), Expect = 0.12
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 69 PGSYDST---SSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQ-PDLLPIPRSPQP 123
PG DS+ SSD L P P P PP PP+ YPP ++ P L P P P P
Sbjct: 363 PGPLDSSAFLSSDFLLPED-----PKPRLPPPPVPPPLLHYPPPAKVPGLEPCPPPPFP 416
>gi|14602437 Williams Beuren syndrome chromosome region 14 isoform
gamma [Homo sapiens]
Length = 850
Score = 34.3 bits (77), Expect = 0.12
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 69 PGSYDST---SSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQ-PDLLPIPRSPQP 123
PG DS+ SSD L P P P PP PP+ YPP ++ P L P P P P
Sbjct: 363 PGPLDSSAFLSSDFLLPED-----PKPRLPPPPVPPPLLHYPPPAKVPGLEPCPPPPFP 416
>gi|14602435 Williams Beuren syndrome chromosome region 14 isoform
beta [Homo sapiens]
Length = 833
Score = 34.3 bits (77), Expect = 0.12
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 69 PGSYDST---SSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQ-PDLLPIPRSPQP 123
PG DS+ SSD L P P P PP PP+ YPP ++ P L P P P P
Sbjct: 363 PGPLDSSAFLSSDFLLPED-----PKPRLPPPPVPPPLLHYPPPAKVPGLEPCPPPPFP 416
>gi|14602433 Williams Beuren syndrome chromosome region 14 isoform
alpha [Homo sapiens]
Length = 852
Score = 34.3 bits (77), Expect = 0.12
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 69 PGSYDST---SSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQ-PDLLPIPRSPQP 123
PG DS+ SSD L P P P PP PP+ YPP ++ P L P P P P
Sbjct: 363 PGPLDSSAFLSSDFLLPED-----PKPRLPPPPVPPPLLHYPPPAKVPGLEPCPPPPFP 416
>gi|149363685 hypothetical protein LOC23379 [Homo sapiens]
Length = 2266
Score = 34.3 bits (77), Expect = 0.12
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 14/103 (13%)
Query: 59 MALCVHCHRLPGSYDSTSSDSLYPRGIQ-----FKRPHTVAPWPPAYPPVTSYPPLS--Q 111
+ + V HR GS + D + +Q FK P PP PV S PP+S
Sbjct: 304 LEVLVQSHRDGGSTEFVDHDHFFDEDLQAAIDFFKLP------PPLLSPVPSPPPMSSPH 357
Query: 112 PDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEEPACE 154
P LP +P+ G + T SS DS + A +E+ E
Sbjct: 358 PGSLPSSFAPETYFGEY-TDSSDNDSVQLRNSAECVSEDDTTE 399
>gi|239752265 PREDICTED: hypothetical protein XP_002348186 [Homo
sapiens]
Length = 225
Score = 34.3 bits (77), Expect = 0.12
Identities = 36/126 (28%), Positives = 46/126 (36%), Gaps = 13/126 (10%)
Query: 69 PGSYDST-----SSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQPDLLPIPRSPQP 123
PGS DS S DS+ P + P +V P PP P PP S ++P P SP
Sbjct: 82 PGSPDSVVLPPRSPDSVVPPP---RSPDSVVP-PPGSPDSVVLPPRSPDSVVPPPGSPDS 137
Query: 124 LGGSHRTPSS----RRDSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPAT 179
+ R+P S R D S + P E + V L S P
Sbjct: 138 VVLPPRSPDSVVPPARSPDSGGRAGSPRSLAPPAAARAEGAPGWAGRWGRVPLARSPPQV 197
Query: 180 STAAPS 185
+ PS
Sbjct: 198 PSRPPS 203
Score = 31.2 bits (69), Expect = 0.99
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 69 PGSYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSH 128
PGS DS L PR P +V P PP P PP S ++P PRSP +
Sbjct: 62 PGSPDSVV---LPPRS-----PDSVVP-PPGSPDSVVLPPRSPDSVVPPPRSPDSVVPPP 112
Query: 129 RTPSS 133
+P S
Sbjct: 113 GSPDS 117
Score = 30.4 bits (67), Expect = 1.7
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 69 PGSYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSH 128
PGS DS S + P +V P PP P PP S ++P P SP +
Sbjct: 42 PGSPDSVVLPS--------RSPDSVVP-PPGSPDSVVLPPRSPDSVVPPPGSPDSVVLPP 92
Query: 129 RTPSS 133
R+P S
Sbjct: 93 RSPDS 97
>gi|11496882 ELK4 protein isoform b [Homo sapiens]
Length = 405
Score = 34.3 bits (77), Expect = 0.12
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 17/112 (15%)
Query: 101 PPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDADE-- 158
PP++S PPL +P PR+P P SH + DS + + EN +D D
Sbjct: 253 PPISSIPPLQEP-----PRTPSPPLSSHPDIDTDIDSVASQPMELPENLSLEPKDQDSVL 307
Query: 159 -DEDDYHN------PGYLVVLPDSTPATSTAAP---SAPALSTPGIRDSAFS 200
++D +N P L + P +S +P +P+L T + + FS
Sbjct: 308 LEKDKVNNSSRSKKPKGLELAPTLVITSSDPSPLGILSPSLPTASLTPAFFS 359
>gi|156119601 spermatogenesis and oogenesis specific basic
helix-loop-helix 1 isoform b [Homo sapiens]
Length = 328
Score = 34.3 bits (77), Expect = 0.12
Identities = 36/116 (31%), Positives = 48/116 (41%), Gaps = 18/116 (15%)
Query: 87 FKRPHTVAPWPP------AYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGA 140
F P ++ PWPP A P S+PP SQ LP+ S + LG + G
Sbjct: 219 FSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTLPV-MSGEALGWLGQA--------GP 269
Query: 141 NSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSA-PALSTPGIR 195
++ + EPA ED ++ G V D T TA PS+ P PG R
Sbjct: 270 LAMGAAPLGEPAKEDPMLAQEAGSALGSDV--DDGTSFLLTAGPSSWPGEWGPGFR 323
>gi|37537554 hypothetical protein FLJ37538 [Homo sapiens]
Length = 841
Score = 34.3 bits (77), Expect = 0.12
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 123 PLGGSHRTPSSRRDSDGANSVASYEN-EEPACEDADEDEDDYHNPGYLVVLPDSTPATST 181
PLGG TP + DSD S A YE + P E+A E + P P A
Sbjct: 238 PLGGGGPTPPAGADSDSEESEAIYEEMKYPLPEEAGEGRANGPPPLTATSPPQQPHALPP 297
Query: 182 AAPSAPALSTPGIRD 196
A PA + P RD
Sbjct: 298 HAHRRPASALPSRRD 312
>gi|33350928 disabled homolog 1 [Homo sapiens]
Length = 555
Score = 33.9 bits (76), Expect = 0.15
Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 28/167 (16%)
Query: 68 LPGSYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQPDLLPIPRSPQPLGGS 127
+PG+ DST S + Q T + A PP P+P
Sbjct: 390 VPGTSDSTRSSPQTDKPRQKMGKETFKDFQMAQPP-------------PVPS-------- 428
Query: 128 HRTPSSRRDSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAP 187
R P + + + +SY N+ +D D+ +D + L + +TP+T++ AP
Sbjct: 429 -RKPDQPSLTCTSEAFSSYFNKVGVAQDTDDCDDFDISQLNLTPVTSTTPSTNSPPTPAP 487
Query: 188 ALSTPGIRDSAFSMESIDDYV-----NVPESGESAEASLDGSREYVN 229
S+P ++ + + D + P E EA DGS+ N
Sbjct: 488 RQSSPSKSSASHASDPTTDDIFEEGFESPSKSEEQEAP-DGSQASSN 533
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.129 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,838,008
Number of Sequences: 37866
Number of extensions: 729718
Number of successful extensions: 5017
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 268
Number of HSP's that attempted gapping in prelim test: 4450
Number of HSP's gapped (non-prelim): 741
length of query: 269
length of database: 18,247,518
effective HSP length: 101
effective length of query: 168
effective length of database: 14,423,052
effective search space: 2423072736
effective search space used: 2423072736
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.