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Search of human proteins with 237858658
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|237858658 ring finger protein 170 isoform c [Homo sapiens]
(174 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237858658 ring finger protein 170 isoform c [Homo sapiens] 364 e-101
gi|237858654 ring finger protein 170 isoform a [Homo sapiens] 364 e-101
gi|237858650 ring finger protein 170 isoform a [Homo sapiens] 364 e-101
gi|237858656 ring finger protein 170 isoform b [Homo sapiens] 115 1e-26
gi|20162564 tripartite motif-containing 40 [Homo sapiens] 51 6e-07
gi|22749269 ring finger protein 129 [Homo sapiens] 47 1e-05
gi|54792146 tripartite motif-containing 47 [Homo sapiens] 47 1e-05
gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo s... 46 2e-05
gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo s... 46 2e-05
gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo s... 46 2e-05
gi|5730009 ret finger protein [Homo sapiens] 45 2e-05
gi|148596968 tripartite motif-containing 8 [Homo sapiens] 45 2e-05
gi|117938316 tripartite motif-containing 22 [Homo sapiens] 45 3e-05
gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo s... 45 3e-05
gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo sa... 45 3e-05
gi|217035095 tripartite motif-containing 62 [Homo sapiens] 45 3e-05
gi|37595555 ring finger protein 125 [Homo sapiens] 45 3e-05
gi|21630277 tripartite motif-containing 11 [Homo sapiens] 45 4e-05
gi|34452681 ring finger protein 10 [Homo sapiens] 45 4e-05
gi|237681119 breast cancer 1, early onset isoform 2 [Homo sapiens] 44 5e-05
gi|237681125 breast cancer 1, early onset isoform 5 [Homo sapiens] 44 5e-05
gi|237681123 breast cancer 1, early onset isoform 4 [Homo sapiens] 44 5e-05
gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens] 44 5e-05
gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens] 44 5e-05
gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens] 44 5e-05
gi|15208660 tripartite motif protein 21 [Homo sapiens] 44 7e-05
gi|60099474 tripartite motif-containing 61 [Homo sapiens] 44 7e-05
gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo sapi... 44 9e-05
gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens] 44 9e-05
gi|18079262 tripartite motif-containing 6 isoform 2 [Homo sapiens] 44 9e-05
>gi|237858658 ring finger protein 170 isoform c [Homo sapiens]
Length = 174
Score = 364 bits (934), Expect = e-101
Identities = 174/174 (100%), Positives = 174/174 (100%)
Query: 1 MYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDD 60
MYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDD
Sbjct: 1 MYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDD 60
Query: 61 QSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFSVGGLFWMFRIRIIL 120
QSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFSVGGLFWMFRIRIIL
Sbjct: 61 QSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFSVGGLFWMFRIRIIL 120
Query: 121 CLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQRLTR 174
CLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQRLTR
Sbjct: 121 CLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQRLTR 174
>gi|237858654 ring finger protein 170 isoform a [Homo sapiens]
Length = 258
Score = 364 bits (934), Expect = e-101
Identities = 174/174 (100%), Positives = 174/174 (100%)
Query: 1 MYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDD 60
MYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDD
Sbjct: 85 MYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDD 144
Query: 61 QSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFSVGGLFWMFRIRIIL 120
QSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFSVGGLFWMFRIRIIL
Sbjct: 145 QSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFSVGGLFWMFRIRIIL 204
Query: 121 CLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQRLTR 174
CLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQRLTR
Sbjct: 205 CLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQRLTR 258
>gi|237858650 ring finger protein 170 isoform a [Homo sapiens]
Length = 258
Score = 364 bits (934), Expect = e-101
Identities = 174/174 (100%), Positives = 174/174 (100%)
Query: 1 MYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDD 60
MYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDD
Sbjct: 85 MYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDD 144
Query: 61 QSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFSVGGLFWMFRIRIIL 120
QSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFSVGGLFWMFRIRIIL
Sbjct: 145 QSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFSVGGLFWMFRIRIIL 204
Query: 121 CLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQRLTR 174
CLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQRLTR
Sbjct: 205 CLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQRLTR 258
>gi|237858656 ring finger protein 170 isoform b [Homo sapiens]
Length = 200
Score = 115 bits (289), Expect = 1e-26
Identities = 48/48 (100%), Positives = 48/48 (100%)
Query: 1 MYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQT 48
MYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQT
Sbjct: 85 MYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQT 132
>gi|20162564 tripartite motif-containing 40 [Homo sapiens]
Length = 229
Score = 50.8 bits (120), Expect = 6e-07
Identities = 20/45 (44%), Positives = 24/45 (53%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQ 47
CPIC V TNCGHLFC C+ + S G CP+CR+
Sbjct: 14 CPICQESLKEAVSTNCGHLFCRVCLTQHVEKASASGVFCCPLCRK 58
>gi|22749269 ring finger protein 129 [Homo sapiens]
Length = 471
Score = 46.6 bits (109), Expect = 1e-05
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICR 46
CPICL PV NCGH FC +C+ W+ CP+CR
Sbjct: 16 CPICLEYLKDPVTINCGHNFCRSCLSVSWK--DLDDTFPCPVCR 57
>gi|54792146 tripartite motif-containing 47 [Homo sapiens]
Length = 638
Score = 46.6 bits (109), Expect = 1e-05
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRY------GSWLGAISCPICRQ 47
CPICL PV CGH FC AC+ A W + G GA CP+C++
Sbjct: 9 CPICLEPLREPVTLPCGHNFCLACLGALWPHRGASGAGGPGGAARCPLCQE 59
>gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo
sapiens]
Length = 493
Score = 45.8 bits (107), Expect = 2e-05
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSW-LGAISCPICR 46
CPICL + P+ +CGH FC AC+ A + G SCP+CR
Sbjct: 15 CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 59
>gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo
sapiens]
Length = 326
Score = 45.8 bits (107), Expect = 2e-05
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSW-LGAISCPICR 46
CPICL + P+ +CGH FC AC+ A + G SCP+CR
Sbjct: 15 CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 59
>gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo
sapiens]
Length = 347
Score = 45.8 bits (107), Expect = 2e-05
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSW-LGAISCPICR 46
CPICL + P+ +CGH FC AC+ A + G SCP+CR
Sbjct: 15 CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 59
>gi|5730009 ret finger protein [Homo sapiens]
Length = 513
Score = 45.4 bits (106), Expect = 2e-05
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQT 48
CP+CL + P+ +CGH C AC+ W G+ +SCP CR+T
Sbjct: 16 CPVCLQYFAEPMMLDCGHNICCACLARCW--GTAETNVSCPQCRET 59
>gi|148596968 tripartite motif-containing 8 [Homo sapiens]
Length = 551
Score = 45.4 bits (106), Expect = 2e-05
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 1 MYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQ 47
+ CPICLH PV+ C H FC CI W S G + CP C Q
Sbjct: 13 LICPICLHVFVEPVQLPCKHNFCRGCIGEAWAKDS--GLVRCPECNQ 57
>gi|117938316 tripartite motif-containing 22 [Homo sapiens]
Length = 498
Score = 45.1 bits (105), Expect = 3e-05
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWL--GAISCPICR 46
CPICL + P+ +CGH FC ACI A + + G SCP+C+
Sbjct: 15 CPICLELLTEPLSLDCGHSFCQACITAKIKESVIISRGESSCPVCQ 60
>gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo
sapiens]
Length = 500
Score = 45.1 bits (105), Expect = 3e-05
Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICR 46
CPICL PV CGH FC C+ W G G CP CR
Sbjct: 12 CPICLDYFQDPVSIECGHNFCRGCLHRNWAPGG--GPFPCPECR 53
>gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo
sapiens]
Length = 474
Score = 45.1 bits (105), Expect = 3e-05
Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICR 46
CPICL PV CGH FC C+ W G G CP CR
Sbjct: 12 CPICLDYFQDPVSIECGHNFCRGCLHRNWAPGG--GPFPCPECR 53
>gi|217035095 tripartite motif-containing 62 [Homo sapiens]
Length = 475
Score = 45.1 bits (105), Expect = 3e-05
Identities = 20/48 (41%), Positives = 23/48 (47%)
Query: 1 MYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQT 48
+ C ICL PV C H FC CI +W GA CP CR+T
Sbjct: 9 LLCSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEAQGARDCPECRRT 56
>gi|37595555 ring finger protein 125 [Homo sapiens]
Length = 232
Score = 45.1 bits (105), Expect = 3e-05
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICR 46
C +CL PV T CGH+FC +CI + W +CP CR
Sbjct: 37 CAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKW----TCPYCR 76
>gi|21630277 tripartite motif-containing 11 [Homo sapiens]
Length = 468
Score = 44.7 bits (104), Expect = 4e-05
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQ 47
C ICL + PV T+CGH FC CI W G G +CP CR+
Sbjct: 16 CAICLDYFTDPVMTDCGHNFCRECIRRCW--GQPEGPYACPECRE 58
>gi|34452681 ring finger protein 10 [Homo sapiens]
Length = 811
Score = 44.7 bits (104), Expect = 4e-05
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYG--SWLGAISCPICRQTV 49
CPICL+ + T CGH+FC ACI+ Y +W CPIC +V
Sbjct: 225 CPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTW---SKCPICYSSV 270
>gi|237681119 breast cancer 1, early onset isoform 2 [Homo
sapiens]
Length = 1884
Score = 44.3 bits (103), Expect = 5e-05
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVT 50
CPICL PV T C H+FC C++ G CP+C+ +T
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK--GPSQCPLCKNDIT 69
>gi|237681125 breast cancer 1, early onset isoform 5 [Homo
sapiens]
Length = 699
Score = 44.3 bits (103), Expect = 5e-05
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVT 50
CPICL PV T C H+FC C++ G CP+C+ +T
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK--GPSQCPLCKNDIT 69
>gi|237681123 breast cancer 1, early onset isoform 4 [Homo
sapiens]
Length = 759
Score = 44.3 bits (103), Expect = 5e-05
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVT 50
CPICL PV T C H+FC C++ G CP+C+ +T
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK--GPSQCPLCKNDIT 69
>gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens]
Length = 1863
Score = 44.3 bits (103), Expect = 5e-05
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVT 50
CPICL PV T C H+FC C++ G CP+C+ +T
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK--GPSQCPLCKNDIT 69
>gi|25777698 tripartite motif-containing 39 isoform 2 [Homo
sapiens]
Length = 488
Score = 44.3 bits (103), Expect = 5e-05
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQT 48
C +CL PV CGH FC ACI +W CP+CR+T
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRWWE--DLERDFPCPVCRKT 72
>gi|25777696 tripartite motif-containing 39 isoform 1 [Homo
sapiens]
Length = 518
Score = 44.3 bits (103), Expect = 5e-05
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQT 48
C +CL PV CGH FC ACI +W CP+CR+T
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRWWE--DLERDFPCPVCRKT 72
>gi|15208660 tripartite motif protein 21 [Homo sapiens]
Length = 475
Score = 43.9 bits (102), Expect = 7e-05
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTL 51
CPICL PV CGH FC CI + G G++ CP+CRQ L
Sbjct: 16 CPICLDPFVEPVSIECGHSFCQECISQVGKGG---GSV-CPVCRQRFLL 60
>gi|60099474 tripartite motif-containing 61 [Homo sapiens]
Length = 209
Score = 43.9 bits (102), Expect = 7e-05
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPIC 45
CPICL PV +CGH FC +CII W+ + CP C
Sbjct: 16 CPICLDYLKDPVTISCGHNFCLSCIIMSWK--DLHDSFPCPFC 56
>gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo
sapiens]
Length = 346
Score = 43.5 bits (101), Expect = 9e-05
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQ 47
C +CL + P T CGHLFC CI A+ CP+CR+
Sbjct: 293 CTLCLEERRHPTATPCGHLFCWECITAWCS-----SKAECPLCRE 332
>gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens]
Length = 326
Score = 43.5 bits (101), Expect = 9e-05
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQ 47
C +CL + P T CGHLFC CI A+ CP+CR+
Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECITAWCS-----SKAECPLCRE 312
>gi|18079262 tripartite motif-containing 6 isoform 2 [Homo
sapiens]
Length = 488
Score = 43.5 bits (101), Expect = 9e-05
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYG--SWLGAISCPICR 46
CPICL + P+ +CGH FC ACI R G SCP+C+
Sbjct: 15 CPICLELLTEPLSIDCGHSFCQACITPNGRESVIGQEGERSCPVCQ 60
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.337 0.150 0.500
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,189,406
Number of Sequences: 37866
Number of extensions: 244161
Number of successful extensions: 1365
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 1117
Number of HSP's gapped (non-prelim): 302
length of query: 174
length of database: 18,247,518
effective HSP length: 95
effective length of query: 79
effective length of database: 14,650,248
effective search space: 1157369592
effective search space used: 1157369592
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.