Guide to the Human Genome
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Name: RNF170 Sequence: fasta or formatted (258aa) NCBI GI: 237858654
Description:

ring finger protein 170 isoform a

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt mRNA [258aa] ring finger protein 170 isoform a
alt prot [200aa] ring finger protein 170 isoform b
alt prot [174aa] ring finger protein 170 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         15           2
 C cysteine            3.1          8           1
 D aspartate           5.8         15           3
 E glutamate           4.7         12           1
 F phenylalanine       7.4         19           2
 G glycine             5.0         13           2
 H histidine           2.3          6           1
 I isoleucine          8.1         21           2
 K lysine              0.8          2           1
 L leucine            12.4         32           3
 M methionine          3.1          8           1
 N asparagine          2.3          6           1
 P proline             3.5          9           1
 Q glutamine           6.6         17           2
 R arginine            7.0         18           2
 S serine              5.0         13           1
 T threonine           4.3         11           1
 V valine              7.8         20           3
 W tryptophan          1.2          3           1
 Y tyrosine            3.9         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 170 isoform a 
RNF170                1.000   ring finger protein 170 isoform a 
RNF170                0.681   ring finger protein 170 isoform c 
RNF170                0.502   ring finger protein 170 isoform b 
TRIM40                0.052   tripartite motif-containing 40 
TRIM21                0.044   tripartite motif protein 21 
TRIM8                 0.044   tripartite motif-containing 8 
TRIM39                0.044   tripartite motif-containing 39 isoform 2 
TRIM39                0.044   tripartite motif-containing 39 isoform 1 
TRIM60                0.044   ring finger protein 129 
TRIM47                0.044   tripartite motif-containing 47 
TRIM5                 0.042   tripartite motif protein TRIM5 isoform alpha 
TRIM5                 0.042   tripartite motif protein TRIM5 isoform delta 
TRIM5                 0.042   tripartite motif protein TRIM5 isoform gamma 
TRIM4                 0.042   tripartite motif protein TRIM4 isoform alpha 
TRIM4                 0.042   tripartite motif protein TRIM4 isoform beta 
TRIM62                0.042   tripartite motif-containing 62 
RNF125                0.042   ring finger protein 125 
TRIM22                0.040   tripartite motif-containing 22 
TRIM27                0.040   ret finger protein 
TRIM68                0.040   ring finger protein 137 
RAG1                  0.040   recombination activating gene 1 
TRIM11                0.040   tripartite motif-containing 11 
RNF10                 0.040   ring finger protein 10 
RNF138                0.040   ring finger protein 138 isoform 1 
BRCA1                 0.038   breast cancer 1, early onset isoform 2 
BRCA1                 0.038   breast cancer 1, early onset isoform 5 
BRCA1                 0.038   breast cancer 1, early onset isoform 4 
BRCA1                 0.038   breast cancer 1, early onset isoform 1 
TRIML1                0.038   tripartite motif family-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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