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Search of human proteins with 237858656
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|237858656 ring finger protein 170 isoform b [Homo sapiens]
(200 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237858656 ring finger protein 170 isoform b [Homo sapiens] 417 e-117
gi|237858654 ring finger protein 170 isoform a [Homo sapiens] 275 2e-74
gi|237858650 ring finger protein 170 isoform a [Homo sapiens] 275 2e-74
gi|237858658 ring finger protein 170 isoform c [Homo sapiens] 115 2e-26
gi|20162564 tripartite motif-containing 40 [Homo sapiens] 59 3e-09
gi|148596968 tripartite motif-containing 8 [Homo sapiens] 50 1e-06
gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo s... 48 5e-06
gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo sa... 48 5e-06
gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens] 48 6e-06
gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens] 48 6e-06
gi|15208660 tripartite motif protein 21 [Homo sapiens] 47 1e-05
gi|22749269 ring finger protein 129 [Homo sapiens] 47 1e-05
gi|54792146 tripartite motif-containing 47 [Homo sapiens] 47 1e-05
gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo s... 46 2e-05
gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo s... 46 2e-05
gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo s... 46 2e-05
gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Ho... 46 2e-05
gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Hom... 46 2e-05
gi|37595555 ring finger protein 125 [Homo sapiens] 46 2e-05
gi|217035095 tripartite motif-containing 62 [Homo sapiens] 46 2e-05
gi|117938316 tripartite motif-containing 22 [Homo sapiens] 45 3e-05
gi|68160937 tripartite motif-containing 25 [Homo sapiens] 45 3e-05
gi|5730009 ret finger protein [Homo sapiens] 45 3e-05
gi|198442878 tripartite motif-containing 17 isoform 3 [Homo sapi... 45 4e-05
gi|68160933 tripartite motif-containing 17 isoform 1 [Homo sapiens] 45 4e-05
gi|7705825 tripartite motif-containing 17 isoform 1 [Homo sapiens] 45 4e-05
gi|34452681 ring finger protein 10 [Homo sapiens] 45 4e-05
gi|4557841 recombination activating gene 1 [Homo sapiens] 45 5e-05
gi|21630277 tripartite motif-containing 11 [Homo sapiens] 45 5e-05
gi|37622899 ring finger protein 137 [Homo sapiens] 44 7e-05
>gi|237858656 ring finger protein 170 isoform b [Homo sapiens]
Length = 200
Score = 417 bits (1071), Expect = e-117
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 1 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV 60
MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV
Sbjct: 1 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV 60
Query: 61 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW 120
RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW
Sbjct: 61 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW 120
Query: 121 LGAISCPICRQTGSSEKSSRASEQTHQEAVACLDTQNSPACTVGCRSGPQHIPHDRMLPS 180
LGAISCPICRQTGSSEKSSRASEQTHQEAVACLDTQNSPACTVGCRSGPQHIPHDRMLPS
Sbjct: 121 LGAISCPICRQTGSSEKSSRASEQTHQEAVACLDTQNSPACTVGCRSGPQHIPHDRMLPS 180
Query: 181 ASPRLCFTLLDCVSILWFSG 200
ASPRLCFTLLDCVSILWFSG
Sbjct: 181 ASPRLCFTLLDCVSILWFSG 200
>gi|237858654 ring finger protein 170 isoform a [Homo sapiens]
Length = 258
Score = 275 bits (703), Expect = 2e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV 60
MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV
Sbjct: 1 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV 60
Query: 61 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW 120
RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW
Sbjct: 61 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW 120
Query: 121 LGAISCPICRQT 132
LGAISCPICRQT
Sbjct: 121 LGAISCPICRQT 132
>gi|237858650 ring finger protein 170 isoform a [Homo sapiens]
Length = 258
Score = 275 bits (703), Expect = 2e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV 60
MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV
Sbjct: 1 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV 60
Query: 61 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW 120
RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW
Sbjct: 61 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW 120
Query: 121 LGAISCPICRQT 132
LGAISCPICRQT
Sbjct: 121 LGAISCPICRQT 132
>gi|237858658 ring finger protein 170 isoform c [Homo sapiens]
Length = 174
Score = 115 bits (289), Expect = 2e-26
Identities = 48/48 (100%), Positives = 48/48 (100%)
Query: 85 MYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQT 132
MYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQT
Sbjct: 1 MYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQT 48
>gi|20162564 tripartite motif-containing 40 [Homo sapiens]
Length = 229
Score = 58.9 bits (141), Expect = 3e-09
Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTGSSEKSSRASE-QT 145
CPIC V TNCGHLFC C+ + S G CP+CR+ S E
Sbjct: 14 CPICQESLKEAVSTNCGHLFCRVCLTQHVEKASASGVFCCPLCRKPCSEEVLGTGYICPN 73
Query: 146 HQEAVACLDTQNSPACTVGCRSGPQHIPHDRM 177
HQ+ V ++ V C P+H+ H +
Sbjct: 74 HQKRVCRFCEESRLLLCVECLVSPEHMSHHEL 105
>gi|148596968 tripartite motif-containing 8 [Homo sapiens]
Length = 551
Score = 50.1 bits (118), Expect = 1e-06
Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 81 FYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTGSS----E 136
F ++ CPICLH PV+ C H FC CI W S G + CP C Q + E
Sbjct: 9 FEEELICPICLHVFVEPVQLPCKHNFCRGCIGEAWAKDS--GLVRCPECNQAYNQKPGLE 66
Query: 137 KSSRASEQTHQEAVACLDTQNSPAC--TVGCRSGP 169
K+ + + E L + PA V CR GP
Sbjct: 67 KNLKLTNIV--EKFNALHVEKPPAALHCVFCRRGP 99
>gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo
sapiens]
Length = 500
Score = 48.1 bits (113), Expect = 5e-06
Identities = 33/114 (28%), Positives = 44/114 (38%), Gaps = 27/114 (23%)
Query: 84 DMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTGS------SEK 137
++ CPICL PV CGH FC C+ W G G CP CR + +
Sbjct: 9 ELTCPICLDYFQDPVSIECGHNFCRGCLHRNWAPGG--GPFPCPECRHPSAPAALRPNWA 66
Query: 138 SSRASEQTHQEAVA-----------------CLDTQNSPACTVGCRSGPQHIPH 174
+R +E+T + + C D Q P C V CR +H H
Sbjct: 67 LARLTEKTQRRRLGPVPPGLCGRHWEPLRLFCEDDQR-PVCLV-CRESQEHQTH 118
>gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo
sapiens]
Length = 474
Score = 48.1 bits (113), Expect = 5e-06
Identities = 33/114 (28%), Positives = 44/114 (38%), Gaps = 27/114 (23%)
Query: 84 DMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTGS------SEK 137
++ CPICL PV CGH FC C+ W G G CP CR + +
Sbjct: 9 ELTCPICLDYFQDPVSIECGHNFCRGCLHRNWAPGG--GPFPCPECRHPSAPAALRPNWA 66
Query: 138 SSRASEQTHQEAVA-----------------CLDTQNSPACTVGCRSGPQHIPH 174
+R +E+T + + C D Q P C V CR +H H
Sbjct: 67 LARLTEKTQRRRLGPVPPGLCGRHWEPLRLFCEDDQR-PVCLV-CRESQEHQTH 118
>gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens]
Length = 488
Score = 47.8 bits (112), Expect = 6e-06
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 75 AATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTGS 134
AA + + C +CL PV CGH FC ACI +W CP+CR+T S
Sbjct: 17 AAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWE--DLERDFPCPVCRKT-S 73
Query: 135 SEKSSRASEQ 144
+S R + Q
Sbjct: 74 RYRSLRPNRQ 83
>gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens]
Length = 518
Score = 47.8 bits (112), Expect = 6e-06
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 75 AATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTGS 134
AA + + C +CL PV CGH FC ACI +W CP+CR+T S
Sbjct: 17 AAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWE--DLERDFPCPVCRKT-S 73
Query: 135 SEKSSRASEQ 144
+S R + Q
Sbjct: 74 RYRSLRPNRQ 83
>gi|15208660 tripartite motif protein 21 [Homo sapiens]
Length = 475
Score = 47.0 bits (110), Expect = 1e-05
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 73 APAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQ 131
A AA + ++ CPICL PV CGH FC CI + G G++ CP+CRQ
Sbjct: 2 ASAARLTMMWEEVTCPICLDPFVEPVSIECGHSFCQECISQVGKGG---GSV-CPVCRQ 56
>gi|22749269 ring finger protein 129 [Homo sapiens]
Length = 471
Score = 46.6 bits (109), Expect = 1e-05
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICR 130
CPICL PV NCGH FC +C+ W+ CP+CR
Sbjct: 16 CPICLEYLKDPVTINCGHNFCRSCLSVSWK--DLDDTFPCPVCR 57
>gi|54792146 tripartite motif-containing 47 [Homo sapiens]
Length = 638
Score = 46.6 bits (109), Expect = 1e-05
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRY------GSWLGAISCPICRQ 131
CPICL PV CGH FC AC+ A W + G GA CP+C++
Sbjct: 9 CPICLEPLREPVTLPCGHNFCLACLGALWPHRGASGAGGPGGAARCPLCQE 59
>gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo
sapiens]
Length = 493
Score = 46.2 bits (108), Expect = 2e-05
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 84 DMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW-LGAISCPICR 130
++ CPICL + P+ +CGH FC AC+ A + G SCP+CR
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 59
>gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo
sapiens]
Length = 326
Score = 46.2 bits (108), Expect = 2e-05
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 84 DMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW-LGAISCPICR 130
++ CPICL + P+ +CGH FC AC+ A + G SCP+CR
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 59
>gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo
sapiens]
Length = 347
Score = 46.2 bits (108), Expect = 2e-05
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 84 DMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW-LGAISCPICR 130
++ CPICL + P+ +CGH FC AC+ A + G SCP+CR
Sbjct: 12 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 59
>gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Homo
sapiens]
Length = 1687
Score = 46.2 bits (108), Expect = 2e-05
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 87 CPICLHQASFP-VETNCGHLFCGACI---IAYWRYGSWLGAISCPICRQTGSSEKSSR-- 140
CPIC Q CGH FC CI I + GS +I C ICRQT S ++ S
Sbjct: 1436 CPICARQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVF 1495
Query: 141 ASEQTHQE 148
SE+ +QE
Sbjct: 1496 TSEKANQE 1503
>gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Homo
sapiens]
Length = 1659
Score = 46.2 bits (108), Expect = 2e-05
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 87 CPICLHQASFP-VETNCGHLFCGACI---IAYWRYGSWLGAISCPICRQTGSSEKSSR-- 140
CPIC Q CGH FC CI I + GS +I C ICRQT S ++ S
Sbjct: 1436 CPICARQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVF 1495
Query: 141 ASEQTHQE 148
SE+ +QE
Sbjct: 1496 TSEKANQE 1503
>gi|37595555 ring finger protein 125 [Homo sapiens]
Length = 232
Score = 46.2 bits (108), Expect = 2e-05
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 83 TDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTGSSE 136
T C +CL PV T CGH+FC +CI + W +CP CR SE
Sbjct: 33 TSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKW----TCPYCRAYLPSE 82
>gi|217035095 tripartite motif-containing 62 [Homo sapiens]
Length = 475
Score = 45.8 bits (107), Expect = 2e-05
Identities = 20/49 (40%), Positives = 24/49 (48%)
Query: 84 DMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQT 132
++ C ICL PV C H FC CI +W GA CP CR+T
Sbjct: 8 ELLCSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEAQGARDCPECRRT 56
>gi|117938316 tripartite motif-containing 22 [Homo sapiens]
Length = 498
Score = 45.4 bits (106), Expect = 3e-05
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 84 DMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWL--GAISCPICR 130
++ CPICL + P+ +CGH FC ACI A + + G SCP+C+
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVIISRGESSCPVCQ 60
>gi|68160937 tripartite motif-containing 25 [Homo sapiens]
Length = 630
Score = 45.4 bits (106), Expect = 3e-05
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 84 DMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTGSSEKSSRASE 143
++ C ICL PV T CGH FCG+C+ W CP CR +A
Sbjct: 10 ELSCSICLEPFKEPVTTPCGHNFCGSCLNETWAVQG--SPYLCPQCRAV------YQARP 61
Query: 144 QTHQEAVAC 152
Q H+ V C
Sbjct: 62 QLHKNTVLC 70
>gi|5730009 ret finger protein [Homo sapiens]
Length = 513
Score = 45.4 bits (106), Expect = 3e-05
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQT 132
CP+CL + P+ +CGH C AC+ W G+ +SCP CR+T
Sbjct: 16 CPVCLQYFAEPMMLDCGHNICCACLARCW--GTAETNVSCPQCRET 59
>gi|198442878 tripartite motif-containing 17 isoform 3 [Homo
sapiens]
Length = 343
Score = 45.1 bits (105), Expect = 4e-05
Identities = 33/122 (27%), Positives = 43/122 (35%), Gaps = 30/122 (24%)
Query: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYG-------SWLGAISCPICRQTGSSE--- 136
C ICL + PV T CGH FC ACI W G+ CP CR+
Sbjct: 16 CSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSFPCPECREMSPQRNLL 75
Query: 137 ------------------KSSRASEQTHQEAVACLDTQNSPACTVGCRSGPQHIPHDRML 178
+ ++ H+ SP C V CR +H H R+L
Sbjct: 76 PNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV-CRESREHRLH-RVL 133
Query: 179 PS 180
P+
Sbjct: 134 PA 135
>gi|68160933 tripartite motif-containing 17 isoform 1 [Homo sapiens]
Length = 477
Score = 45.1 bits (105), Expect = 4e-05
Identities = 33/122 (27%), Positives = 43/122 (35%), Gaps = 30/122 (24%)
Query: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYG-------SWLGAISCPICRQTGSSE--- 136
C ICL + PV T CGH FC ACI W G+ CP CR+
Sbjct: 16 CSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSFPCPECREMSPQRNLL 75
Query: 137 ------------------KSSRASEQTHQEAVACLDTQNSPACTVGCRSGPQHIPHDRML 178
+ ++ H+ SP C V CR +H H R+L
Sbjct: 76 PNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV-CRESREHRLH-RVL 133
Query: 179 PS 180
P+
Sbjct: 134 PA 135
>gi|7705825 tripartite motif-containing 17 isoform 1 [Homo sapiens]
Length = 477
Score = 45.1 bits (105), Expect = 4e-05
Identities = 33/122 (27%), Positives = 43/122 (35%), Gaps = 30/122 (24%)
Query: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYG-------SWLGAISCPICRQTGSSE--- 136
C ICL + PV T CGH FC ACI W G+ CP CR+
Sbjct: 16 CSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSFPCPECREMSPQRNLL 75
Query: 137 ------------------KSSRASEQTHQEAVACLDTQNSPACTVGCRSGPQHIPHDRML 178
+ ++ H+ SP C V CR +H H R+L
Sbjct: 76 PNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV-CRESREHRLH-RVL 133
Query: 179 PS 180
P+
Sbjct: 134 PA 135
>gi|34452681 ring finger protein 10 [Homo sapiens]
Length = 811
Score = 45.1 bits (105), Expect = 4e-05
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYG--SWLGAISCPIC-RQTGSSEKSSRASE 143
CPICL+ + T CGH+FC ACI+ Y +W CPIC + S +
Sbjct: 225 CPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTW---SKCPICYSSVHKKDLKSVVAT 281
Query: 144 QTHQEAV 150
++HQ V
Sbjct: 282 ESHQYVV 288
>gi|4557841 recombination activating gene 1 [Homo sapiens]
Length = 1043
Score = 44.7 bits (104), Expect = 5e-05
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 79 QQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWR-YGSWLGAISCPICR 130
+ F + C IC H + PVETNC H+FC CI+ + GS+ CP CR
Sbjct: 285 EHFVKSISCQICEHILADPVETNCKHVFCRVCILRCLKVMGSY-----CPSCR 332
>gi|21630277 tripartite motif-containing 11 [Homo sapiens]
Length = 468
Score = 44.7 bits (104), Expect = 5e-05
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQ 131
C ICL + PV T+CGH FC CI W G G +CP CR+
Sbjct: 16 CAICLDYFTDPVMTDCGHNFCRECIRRCW--GQPEGPYACPECRE 58
>gi|37622899 ring finger protein 137 [Homo sapiens]
Length = 485
Score = 44.3 bits (103), Expect = 7e-05
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 74 PAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRY--GSWLGAISCPICR 130
P A + ++ CPIC+ P+ +CGH FC +C+ W S +CP+CR
Sbjct: 3 PTALVEAIVEEVACPICMTFLREPMSIDCGHSFCHSCLSGLWEIPGESQNWGYTCPLCR 61
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.134 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,680,877
Number of Sequences: 37866
Number of extensions: 323801
Number of successful extensions: 1686
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 1456
Number of HSP's gapped (non-prelim): 294
length of query: 200
length of database: 18,247,518
effective HSP length: 97
effective length of query: 103
effective length of database: 14,574,516
effective search space: 1501175148
effective search space used: 1501175148
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.