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Search of human proteins with 116063568
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116063568 hypothetical protein LOC54863 [Homo sapiens]
(423 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116063568 hypothetical protein LOC54863 [Homo sapiens] 836 0.0
gi|145386578 torsin family 2, member A isoform a [Homo sapiens] 77 4e-14
gi|4557541 torsin A [Homo sapiens] 74 3e-13
gi|14149653 torsin family 1, member B (torsin B) [Homo sapiens] 71 2e-12
gi|115647957 torsin family 3, member A [Homo sapiens] 64 3e-10
gi|197313700 torsin family 2, member A isoform c [Homo sapiens] 53 5e-07
gi|145386549 torsin family 2, member A isoform b [Homo sapiens] 52 8e-07
gi|119964723 immediate early response 3 [Homo sapiens] 49 1e-05
gi|182765480 chromosome 6 open reading frame 186 [Homo sapiens] 35 0.098
gi|13540606 caseinolytic peptidase B [Homo sapiens] 35 0.13
gi|198442844 dynein, axonemal, heavy chain 10 [Homo sapiens] 33 0.49
gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens] 32 1.4
gi|188595670 choline acetyltransferase isoform 2 [Homo sapiens] 32 1.4
gi|84626580 hypothetical protein LOC80178 [Homo sapiens] 32 1.4
gi|237858799 adenylate kinase domain containing 1 isoform 1 [Hom... 31 1.9
gi|239754748 PREDICTED: hypothetical protein [Homo sapiens] 31 1.9
gi|187937176 NACHT, leucine rich repeat and PYD containing 7 iso... 31 1.9
gi|75709196 NACHT, leucine rich repeat and PYD containing 7 isof... 31 1.9
gi|46049100 NACHT, leucine rich repeat and PYD containing 7 isof... 31 1.9
gi|156104874 envoplakin [Homo sapiens] 31 2.4
gi|190886454 tumor specificity and mitosis phase-dependent expre... 31 2.4
gi|239757810 PREDICTED: similar to protein phosphatase 1, regula... 30 3.2
gi|239756163 PREDICTED: hypothetical protein [Homo sapiens] 30 3.2
gi|239750683 PREDICTED: hypothetical protein XP_002347505 [Homo ... 30 3.2
gi|239744993 PREDICTED: hypothetical protein XP_002343324 [Homo ... 30 3.2
gi|194294554 SET binding protein 1 isoform a [Homo sapiens] 30 3.2
gi|58761532 protein phosphatase 1, regulatory (inhibitor) subuni... 30 3.2
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 30 3.2
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 30 4.1
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 30 4.1
>gi|116063568 hypothetical protein LOC54863 [Homo sapiens]
Length = 423
Score = 836 bits (2159), Expect = 0.0
Identities = 423/423 (100%), Positives = 423/423 (100%)
Query: 1 MDRGQPSLEPAAAAPRASGRCVIAPVRAVLRLRRRVCVLRKRRLLQPGGGPDVGTGAPRP 60
MDRGQPSLEPAAAAPRASGRCVIAPVRAVLRLRRRVCVLRKRRLLQPGGGPDVGTGAPRP
Sbjct: 1 MDRGQPSLEPAAAAPRASGRCVIAPVRAVLRLRRRVCVLRKRRLLQPGGGPDVGTGAPRP 60
Query: 61 GCSPRAPRADLDQPKFFTFDSPAELPSRTPRKKRRRSRLVLYPETSRKYRPRVEHRSRAQ 120
GCSPRAPRADLDQPKFFTFDSPAELPSRTPRKKRRRSRLVLYPETSRKYRPRVEHRSRAQ
Sbjct: 61 GCSPRAPRADLDQPKFFTFDSPAELPSRTPRKKRRRSRLVLYPETSRKYRPRVEHRSRAQ 120
Query: 121 RCLLLLVAIVGFQVLNAIENLDDNAQRYDLDGLEKALQRAVFGQPAAVSRIVALMRDYLA 180
RCLLLLVAIVGFQVLNAIENLDDNAQRYDLDGLEKALQRAVFGQPAAVSRIVALMRDYLA
Sbjct: 121 RCLLLLVAIVGFQVLNAIENLDDNAQRYDLDGLEKALQRAVFGQPAAVSRIVALMRDYLA 180
Query: 181 THVHSRPLLLALHGPSGVGKSHVGRLLARHFRSVLEDSALVLQYHARHHCPEARAAQDCR 240
THVHSRPLLLALHGPSGVGKSHVGRLLARHFRSVLEDSALVLQYHARHHCPEARAAQDCR
Sbjct: 181 THVHSRPLLLALHGPSGVGKSHVGRLLARHFRSVLEDSALVLQYHARHHCPEARAAQDCR 240
Query: 241 EELARRVADVVARAEAEEKTPLLVLDDVELMPRPLLDELHGFLQPQRSHHFHNAIYVLLS 300
EELARRVADVVARAEAEEKTPLLVLDDVELMPRPLLDELHGFLQPQRSHHFHNAIYVLLS
Sbjct: 241 EELARRVADVVARAEAEEKTPLLVLDDVELMPRPLLDELHGFLQPQRSHHFHNAIYVLLS 300
Query: 301 GAGGAEVTRFVLQNASRALPLRPDGFRSAEAAAAQAEEDLRASLLAVLSREHPLWQAAAI 360
GAGGAEVTRFVLQNASRALPLRPDGFRSAEAAAAQAEEDLRASLLAVLSREHPLWQAAAI
Sbjct: 301 GAGGAEVTRFVLQNASRALPLRPDGFRSAEAAAAQAEEDLRASLLAVLSREHPLWQAAAI 360
Query: 361 VPFLLLDKRDVVSCFRDEMAGEGFFPDQARAENLAAQLSFYRVAGREFAVTGCKQVVATV 420
VPFLLLDKRDVVSCFRDEMAGEGFFPDQARAENLAAQLSFYRVAGREFAVTGCKQVVATV
Sbjct: 361 VPFLLLDKRDVVSCFRDEMAGEGFFPDQARAENLAAQLSFYRVAGREFAVTGCKQVVATV 420
Query: 421 NLL 423
NLL
Sbjct: 421 NLL 423
>gi|145386578 torsin family 2, member A isoform a [Homo sapiens]
Length = 321
Score = 76.6 bits (187), Expect = 4e-14
Identities = 73/286 (25%), Positives = 126/286 (44%), Gaps = 26/286 (9%)
Query: 147 RYDLDGLEKALQRAVFGQPAAVSRIVALMRDYLATHVHSRPLLLALHGPSGVGKSHVGRL 206
R DL GLE L + + GQ A + +V ++ ++ ++PL+L+LHG +G GKS+V L
Sbjct: 46 RPDLPGLECDLAQHLAGQHLAKALVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSYVSSL 105
Query: 207 LARHFRSVLEDSALVLQYHARHHCPEARAAQDCREELARRVADVVARAEAEEKTPLLVLD 266
LA + S V + H P + +++L V + L + D
Sbjct: 106 LAHYLFQGGLRSPRVHHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRS----LFLFD 161
Query: 267 DVELMPRPLLDELHGFLQPQ---RSHHFHNAIYVLLSGAGGAEVTRFVLQNASRALPLRP 323
+++ MP L++ L FL ++ AI++ +S GG ++ + L+ A R+
Sbjct: 162 EMDKMPPGLMEVLRPFLGSSWVVYGTNYRKAIFIFISNTGGEQINQVALE-AWRSR---- 216
Query: 324 DGFRSAEAAAAQAEEDLRASLLAVLSREHPLWQAA---------AIVPFLLLDKRDVVSC 374
R E Q E + + AVL H + + A+VPFL L + V C
Sbjct: 217 ---RDREEILLQELEPVISR--AVLDNPHHGFSNSGIMEERLLDAVVPFLPLQRHHVRHC 271
Query: 375 FRDEMAGEGFFPDQARAENLAAQLSFYRVAGREFAVTGCKQVVATV 420
+E+A G P + + +F+ + F+ GCK V + +
Sbjct: 272 VLNELAQLGLEPRDEVVQAVLDSTTFFPEDEQLFSSNGCKTVASRI 317
>gi|4557541 torsin A [Homo sapiens]
Length = 332
Score = 73.6 bits (179), Expect = 3e-13
Identities = 66/279 (23%), Positives = 121/279 (43%), Gaps = 28/279 (10%)
Query: 151 DGLEKALQRAVFGQPAAVSRIVALMRDYLATHVHSRPLLLALHGPSGVGKSHVGRLLARH 210
+ L+K L +FGQ A I+ + ++ +PL L+LHG +G GK+ V +++A +
Sbjct: 59 EALQKDLDDNLFGQHLAKKIILNAVFGFINNPKPKKPLTLSLHGWTGTGKNFVSKIIAEN 118
Query: 211 FRSVLEDSALVLQYHARHHCPEARAAQDCREELARRVADVVARAEAEEKTPLLVLDDVEL 270
+S V + A H P A +++L + V+ + + D+++
Sbjct: 119 IYEGGLNSDYVHLFVATLHFPHASNITLYKDQLQLWIRGNVSACARS----IFIFDEMDK 174
Query: 271 MPRPLLDELHGFLQPQ---RSHHFHNAIYVLLSGAGGAEVTRFVLQNASRALPLRPDGFR 327
M L+D + FL + A+++ LS AG +T L D +R
Sbjct: 175 MHAGLIDAIKPFLDYYDLVDGVSYQKAMFIFLSNAGAERITDVAL-----------DFWR 223
Query: 328 SAEAAAAQAEEDLRASLLAVL--SREHPLWQAAAI--------VPFLLLDKRDVVSCFRD 377
S + +D+ +L + ++ W ++ I VPFL L+ + + C R
Sbjct: 224 SGKQREDIKLKDIEHALSVSVFNNKNSGFWHSSLIDRNLIDYFVPFLPLEYKHLKMCIRV 283
Query: 378 EMAGEGFFPDQARAENLAAQLSFYRVAGREFAVTGCKQV 416
EM G+ D+ +A +++F+ R F+ GCK V
Sbjct: 284 EMQSRGYEIDEDIVSRVAEEMTFFPKEERVFSDKGCKTV 322
>gi|14149653 torsin family 1, member B (torsin B) [Homo sapiens]
Length = 336
Score = 71.2 bits (173), Expect = 2e-12
Identities = 65/277 (23%), Positives = 121/277 (43%), Gaps = 28/277 (10%)
Query: 153 LEKALQRAVFGQPAAVSRIVALMRDYLATHVHSRPLLLALHGPSGVGKSHVGRLLARHFR 212
L+ L+ +FGQ A I + + +PL L+LHG +G GK+ V +++A +
Sbjct: 68 LKLDLEEKLFGQHLATEVIFKALTGFRNNKNPKKPLTLSLHGWAGTGKNFVSQIVAENLH 127
Query: 213 SVLEDSALVLQYHARHHCPEARAAQDCREELARRVADVVARAEAEEKTPLLVLDDVELMP 272
S V + + H P + + +++L + + V+ + + D+++ +
Sbjct: 128 PKGLKSNFVHLFVSTLHFPHEQKIKLYQDQLQKWIRGNVSAC----ANSVFIFDEMDKLH 183
Query: 273 RPLLDELHGFL---QPQRSHHFHNAIYVLLSGAGGAEVTRFVLQNASRALPLRPDGFRSA 329
++D + FL + + AI++ LS AGG +T+ L D +R+
Sbjct: 184 PGIIDAIKPFLDYYEQVDGVSYRKAIFIFLSNAGGDLITKTAL-----------DFWRAG 232
Query: 330 EAAAAQAEEDLRASL-LAVLSREHP-LWQAAAI--------VPFLLLDKRDVVSCFRDEM 379
+DL L + V + +H LW + I +PFL L+ R V C R EM
Sbjct: 233 RKREDIQLKDLEPVLSVGVFNNKHSGLWHSGLIDKNLIDYFIPFLPLEYRHVKMCVRAEM 292
Query: 380 AGEGFFPDQARAENLAAQLSFYRVAGREFAVTGCKQV 416
G D+ +A +++F+ + ++ GCK V
Sbjct: 293 RARGSAIDEDIVTRVAEEMTFFPRDEKIYSDKGCKTV 329
>gi|115647957 torsin family 3, member A [Homo sapiens]
Length = 397
Score = 63.5 bits (153), Expect = 3e-10
Identities = 67/281 (23%), Positives = 111/281 (39%), Gaps = 23/281 (8%)
Query: 152 GLEKALQRAVFGQPAAVSRIVALMRDYLATHVHSRPLLLALHGPSGVGKSHVGRLLARHF 211
GLE L + GQ ++ +R YL T + L L+ HG SG GK+ V R+L +
Sbjct: 125 GLEWDLNVRLHGQHLVQQLVLRTVRGYLETPQPEKALALSFHGWSGTGKNFVARMLVENL 184
Query: 212 RSVLEDSALVLQYHARHHCPEARAAQDCREELARRVADVVARAEAEEKTPLLVLDDVELM 271
S V + A H P + +E+L ++ + L + D+ E +
Sbjct: 185 YRDGLMSDCVRMFIATFHFPHPKYVDLYKEQLMSQIRETQQLCH----QTLFIFDEAEKL 240
Query: 272 PRPLLDELHGFLQPQRSHHFHNA-----IYVLLSGAGGAEVTRFVLQNASRALPLRPDGF 326
LL+ L L+ +R+ H A I++ LS G + VL+ L G+
Sbjct: 241 HPGLLEVLGPHLE-RRAPEGHRAESPWTIFLFLSNLRGDIINEVVLK-------LLKAGW 292
Query: 327 RSAEAAAAQAEEDLRASLLAVL------SREHPLWQAAAIVPFLLLDKRDVVSCFRDEMA 380
E E L+A ++ + SR +PFL L+ R V C RD
Sbjct: 293 SREEITMEHLEPHLQAEIVETIDNGFGHSRLVKENLIDYFIPFLPLEYRHVRLCARDAFL 352
Query: 381 GEGFFPDQARAENLAAQLSFYRVAGREFAVTGCKQVVATVN 421
+ + + +A + + + F+ GCK + +N
Sbjct: 353 SQELLYKEETLDEIAQMMVYVPKEEQLFSSQGCKSISQRIN 393
>gi|197313700 torsin family 2, member A isoform c [Homo sapiens]
Length = 242
Score = 53.1 bits (126), Expect = 5e-07
Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 18/201 (8%)
Query: 147 RYDLDGLEKALQRAVFGQPAAVSRIVALMRDYLATHVHSRPLLLALHGPSGVGKSHVGRL 206
R DL GLE L + + GQ A + +V ++ ++ ++PL+L+LHG +G GKS+V L
Sbjct: 46 RPDLPGLECDLAQHLAGQHLAKALVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSYVSSL 105
Query: 207 LARHFRSVLEDSALVLQYHARHHCPEARAAQDCREELARRVADVVARAEAEEKTPLLVLD 266
LA + S V + H P + +++L V + L + D
Sbjct: 106 LAHYLFQGGLRSPRVHHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRS----LFLFD 161
Query: 267 DVELMPRPLLDELHGFLQPQ---RSHHFHNAIYVLLSGAGGAEVTRFVLQ--NASRALPL 321
+++ MP L++ L FL ++ AI++ + R++L+ + RA P
Sbjct: 162 EMDKMPPGLMEVLRPFLGSSWVVYGTNYRKAIFIFI---------RWLLKLGHHGRAPPR 212
Query: 322 RPDGFRSAEAAAAQAEEDLRA 342
R A AA A RA
Sbjct: 213 RSGALPPAPAAPRPALRAQRA 233
>gi|145386549 torsin family 2, member A isoform b [Homo sapiens]
Length = 253
Score = 52.4 bits (124), Expect = 8e-07
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 4/137 (2%)
Query: 147 RYDLDGLEKALQRAVFGQPAAVSRIVALMRDYLATHVHSRPLLLALHGPSGVGKSHVGRL 206
R DL GLE L + + GQ A + +V ++ ++ ++PL+L+LHG +G GKS+V L
Sbjct: 46 RPDLPGLECDLAQHLAGQHLAKALVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSYVSSL 105
Query: 207 LARHFRSVLEDSALVLQYHARHHCPEARAAQDCREELARRVADVVARAEAEEKTPLLVLD 266
LA + S V + H P + +++L V + L + D
Sbjct: 106 LAHYLFQGGLRSPRVHHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRS----LFLFD 161
Query: 267 DVELMPRPLLDELHGFL 283
+++ MP L++ L FL
Sbjct: 162 EMDKMPPGLMEVLRPFL 178
>gi|119964723 immediate early response 3 [Homo sapiens]
Length = 156
Score = 48.5 bits (114), Expect = 1e-05
Identities = 37/90 (41%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 58 PRPGCSPRAPRADLDQPKFFTFD---SPAELPSRTP---RKKRRRSRLVLYPETSRKYRP 111
P P P R P+ FTFD PA P+ P R R+RSR VLYP R+ P
Sbjct: 19 PAPSTIPGPRRGS--GPEIFTFDPLPEPAAAPAGRPSASRGHRKRSRRVLYPRVVRRQLP 76
Query: 112 RVEHRSRAQRCLLLLVAIVGFQVLNAIENL 141
VE + A+R L LL+ IV Q+L A E +
Sbjct: 77 -VEEPNPAKRLLFLLLTIVFCQILMAEEGV 105
>gi|182765480 chromosome 6 open reading frame 186 [Homo sapiens]
Length = 366
Score = 35.4 bits (80), Expect = 0.098
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 18/63 (28%)
Query: 6 PSLEPAAAAPRASGRCVIAPVRAVLRLRRRVCVLRKRRLLQPGGGPDVGTGAPRPGCSPR 65
P L PA PR + R R+V +R R PGGG G+G P PGC
Sbjct: 56 PHLPPAPGQPRGASR-------------RQVTYVRSGRRAPPGGG---GSGTPEPGCC-- 97
Query: 66 APR 68
APR
Sbjct: 98 APR 100
>gi|13540606 caseinolytic peptidase B [Homo sapiens]
Length = 707
Score = 35.0 bits (79), Expect = 0.13
Identities = 36/183 (19%), Positives = 77/183 (42%), Gaps = 19/183 (10%)
Query: 153 LEKALQRAVFGQPAAVSRI-VALMRDYLATHVHSRPLLLALHGPSGVGKSHVGRLLARHF 211
LE+ L+ + GQ +A++ + A+ R + PL+ G SG+GK+ + + A++
Sbjct: 339 LEQRLKEHIIGQESAIATVGAAIRRKENGWYDEEHPLVFLFLGSSGIGKTELAKQTAKYM 398
Query: 212 RSVLEDSALVL---QYHARHH------CPEARAAQDCREELARRVAD----VVARAEAEE 258
+ + L ++ RH P + +L +++ VV E ++
Sbjct: 399 HKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYVGHEEGGQLTKKLKQCPNAVVLFDEVDK 458
Query: 259 KTPLLVLDDVELMPRPLLDELHGFLQPQRSHHFHNAIYVLLSGAGGAEVTRFVLQNASRA 318
P ++ ++L L + G ++ +AI+++ S E+ + LQ A
Sbjct: 459 AHPDVLTIMLQLFDEGRLTDGKG-----KTIDCKDAIFIMTSNVASDEIAQHALQLRQEA 513
Query: 319 LPL 321
L +
Sbjct: 514 LEM 516
>gi|198442844 dynein, axonemal, heavy chain 10 [Homo sapiens]
Length = 4471
Score = 33.1 bits (74), Expect = 0.49
Identities = 55/256 (21%), Positives = 96/256 (37%), Gaps = 30/256 (11%)
Query: 74 PKFFTFDSPAELPSRTPRKKRRRSRLVLYPETSRKYRPRVEHRSRAQRCLLLLVAIVGFQ 133
P+F + S +P + +L TS + V + C L L
Sbjct: 2583 PRFISLFSVFNVPFPSEESLHLIYSSILKGHTSTFHESIVAVSGKLTFCTLALYK----- 2637
Query: 134 VLNAIENLDDNAQRY----DLDGLEKALQRAVFGQPA---AVSRIVALMRDYLATHVHSR 186
N +++L ++ +L L + V P V+++V + R+ H R
Sbjct: 2638 --NIVQDLPPTPSKFHYIFNLRDLSRVFNGLVLTNPERFQTVAQMVRVWRNECLRVFHDR 2695
Query: 187 PLLLALHGPSGVGKSHVGRLLARHFRS----VLEDSALVLQYHARHHCPEARAAQDCRE- 241
L + + H+G L+ HF+ V+ D L + H E R +D ++
Sbjct: 2696 ---LISETDKQLVQQHIGSLVVEHFKDDVEVVMRDPILFGDFQMALHEGEPRIYEDIQDY 2752
Query: 242 ELARRVADVVARAEAEEKTPL-LVLDDVELMPRPLLDELHGFLQPQRSHHFHNAIYVLLS 300
E A+ + + E T + LVL D L L +H ++ R H A+ V +
Sbjct: 2753 EAAKALFQEILEEYNESNTKMNLVLFDDAL---EHLTRVHRIIRMDRGH----ALLVGVG 2805
Query: 301 GAGGAEVTRFVLQNAS 316
G+G ++R AS
Sbjct: 2806 GSGKQSLSRLAAFTAS 2821
>gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens]
Length = 1505
Score = 31.6 bits (70), Expect = 1.4
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 17/84 (20%)
Query: 6 PSLEPAAAAPRASGRCVIAPVR---------------AVLRLRRRVCVLRKRRLLQPGGG 50
P L+P AA A G V+ V+ AV RR + + + GGG
Sbjct: 792 PGLDPQGAADCAQG--VLRQVKNEVGRSGAWKDHWWSAVQPERRNAASSEEAKAEETGGG 849
Query: 51 PDVGTGAPRPGCSPRAPRADLDQP 74
+ G+G G PRA R+ L P
Sbjct: 850 KEKGSGGSGGGSQPRAERSQLQGP 873
>gi|188595670 choline acetyltransferase isoform 2 [Homo sapiens]
Length = 748
Score = 31.6 bits (70), Expect = 1.4
Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Query: 34 RRVCVLRKRRLLQPGGGPDVGTGAPRPGCSPRAPRADLDQPKFFTFDSPAELPSRTP 90
R C L+ PG DVG A PGCSP PRA P PA P+ TP
Sbjct: 32 RPACFLQSGGRGDPG---DVGGPAGNPGCSPH-PRAATRPPPL-----PAHTPAHTP 79
>gi|84626580 hypothetical protein LOC80178 [Homo sapiens]
Length = 433
Score = 31.6 bits (70), Expect = 1.4
Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 41 KRRLLQPGGGPDVGTGA--PRPGCSPR----APRADLDQPKFFTFDSPAEL 85
+RRLL G G VG GA PRPG R AP A P+ FT L
Sbjct: 154 ERRLLSVGDGTRVGMGARTPRPGAGLRDQQMAPSAAPQAPEAFTLKEKGHL 204
>gi|237858799 adenylate kinase domain containing 1 isoform 1 [Homo
sapiens]
Length = 1911
Score = 31.2 bits (69), Expect = 1.9
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 19/123 (15%)
Query: 162 FGQPAAVSRIVALMRDYLATH--VHSRPLLLALHGPSGVGKSHVGRLLAR-------HFR 212
F A + + DY+A + + PL + L GP G GK+ GR LA F
Sbjct: 964 FSSAEAKEKFLEHPEDYVAHEEPLKAPPLRICLVGPQGSGKTMCGRQLAEKLNIFHIQFE 1023
Query: 213 SVLEDSALV-----LQYHARHHCPEARAAQDCREELARRVADVVARAEAEEKTPLLVLDD 267
VL++ L+ + +AA+ EELA + A + EE+ L +
Sbjct: 1024 EVLQEKLLLKTEKKVGPEFEEDSENEQAAKQELEELA-----IQANVKVEEENTKKQLPE 1078
Query: 268 VEL 270
V+L
Sbjct: 1079 VQL 1081
>gi|239754748 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 31.2 bits (69), Expect = 1.9
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 22/109 (20%)
Query: 26 VRAVLRLR--RRVCVLRKRRLL---QPGGGPDV---GTGAPRPGCSP-RAPRADLD---Q 73
+R+ LRLR R V R+ L +PG P+V G P C P R P Q
Sbjct: 45 LRSTLRLRGPRGWKVGRRPNLTCDREPGARPEVLLVGARRCTPACKPLRLPELLPTLGTQ 104
Query: 74 PKFFTFDSPAELPSRTPRKKRRRSRLVLYPETSRKYRPRVEHRSRAQRC 122
P+ SP+ P R PR RR L PE+ R P H +R+ C
Sbjct: 105 PR-----SPSTGPDRVPRSSRR-----LPPESRRPGGPAKTHPARSACC 143
>gi|187937176 NACHT, leucine rich repeat and PYD containing 7
isoform 3 [Homo sapiens]
Length = 1037
Score = 31.2 bits (69), Expect = 1.9
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 29/176 (16%)
Query: 187 PLLLALHGPSGVGKSHVGRLLARHFRSVLEDSALVLQYHARHHCPEARAAQDCR-EELAR 245
P + LHGP+GVGK+ + + + + + L+Y C E C EL
Sbjct: 171 PYTVVLHGPAGVGKTTLAKKCMLDWTDC--NLSPTLRYAFYLSCKELSRMGPCSFAELIS 228
Query: 246 R----VADVVARAEAEEKTPLLV---LDDVELMPRPLLDELHGFLQPQRSHHFHNAIYVL 298
+ + D + A+ + L V LD++++ P L+ ++ G + ++ + VL
Sbjct: 229 KDWPELQDDIPSILAQAQRILFVVDGLDELKVPPGALIQDICGDWEKKK------PVPVL 282
Query: 299 LSGAGGAEVTRFVLQNASRALPLRPDGFRSAEAAAAQ---------AEEDLRASLL 345
L G+ + R +L A+ + RP R + A Q EED RA L
Sbjct: 283 L----GSLLKRKMLPRAALLVTTRPRALRDLQLLAQQPIYVRVEGFLEEDRRAYFL 334
>gi|75709196 NACHT, leucine rich repeat and PYD containing 7 isoform
2 [Homo sapiens]
Length = 980
Score = 31.2 bits (69), Expect = 1.9
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 29/176 (16%)
Query: 187 PLLLALHGPSGVGKSHVGRLLARHFRSVLEDSALVLQYHARHHCPEARAAQDCR-EELAR 245
P + LHGP+GVGK+ + + + + + L+Y C E C EL
Sbjct: 171 PYTVVLHGPAGVGKTTLAKKCMLDWTDC--NLSPTLRYAFYLSCKELSRMGPCSFAELIS 228
Query: 246 R----VADVVARAEAEEKTPLLV---LDDVELMPRPLLDELHGFLQPQRSHHFHNAIYVL 298
+ + D + A+ + L V LD++++ P L+ ++ G + ++ + VL
Sbjct: 229 KDWPELQDDIPSILAQAQRILFVVDGLDELKVPPGALIQDICGDWEKKK------PVPVL 282
Query: 299 LSGAGGAEVTRFVLQNASRALPLRPDGFRSAEAAAAQ---------AEEDLRASLL 345
L G+ + R +L A+ + RP R + A Q EED RA L
Sbjct: 283 L----GSLLKRKMLPRAALLVTTRPRALRDLQLLAQQPIYVRVEGFLEEDRRAYFL 334
>gi|46049100 NACHT, leucine rich repeat and PYD containing 7 isoform
1 [Homo sapiens]
Length = 1009
Score = 31.2 bits (69), Expect = 1.9
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 29/176 (16%)
Query: 187 PLLLALHGPSGVGKSHVGRLLARHFRSVLEDSALVLQYHARHHCPEARAAQDCR-EELAR 245
P + LHGP+GVGK+ + + + + + L+Y C E C EL
Sbjct: 171 PYTVVLHGPAGVGKTTLAKKCMLDWTDC--NLSPTLRYAFYLSCKELSRMGPCSFAELIS 228
Query: 246 R----VADVVARAEAEEKTPLLV---LDDVELMPRPLLDELHGFLQPQRSHHFHNAIYVL 298
+ + D + A+ + L V LD++++ P L+ ++ G + ++ + VL
Sbjct: 229 KDWPELQDDIPSILAQAQRILFVVDGLDELKVPPGALIQDICGDWEKKK------PVPVL 282
Query: 299 LSGAGGAEVTRFVLQNASRALPLRPDGFRSAEAAAAQ---------AEEDLRASLL 345
L G+ + R +L A+ + RP R + A Q EED RA L
Sbjct: 283 L----GSLLKRKMLPRAALLVTTRPRALRDLQLLAQQPIYVRVEGFLEEDRRAYFL 334
>gi|156104874 envoplakin [Homo sapiens]
Length = 2033
Score = 30.8 bits (68), Expect = 2.4
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 168 VSRIVALMRDYLATHVHSRPLLLALHGP--------SGVGKSHVGRLLARHFRS-VLEDS 218
+ R+ A + + + +H S+ L+ L G + V V + + RH + VLE
Sbjct: 1270 IDRLKAQLNELVNSHGRSQEQLIRLQGERDEWRRERAKVETKTVSKEVVRHEKDPVLEKE 1329
Query: 219 ALVLQYHARHHCPEARAAQDCREEL-ARRVADVVARAEAEEKTPLLVLDDVELMPRPLLD 277
A L+ R + RAA+D EL ++R+ ++ R + EEK ++V + V P L
Sbjct: 1330 AERLRQEVREAAQKRRAAEDAVYELQSKRL--LLERRKPEEK--VVVQEVVVTQKDPKLR 1385
Query: 278 ELHGFL 283
E H L
Sbjct: 1386 EEHSRL 1391
>gi|190886454 tumor specificity and mitosis phase-dependent
expression protein [Homo sapiens]
Length = 394
Score = 30.8 bits (68), Expect = 2.4
Identities = 27/74 (36%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 23 IAPVRAVLRLRRRVCVLRKRRLLQPGGGPDVGTGAP-RPGCSPRAPR-----ADLDQPKF 76
+AP L R V LR LL GGP T AP RPG P P A D+P+
Sbjct: 75 VAPASGYLTFERFVAGLRTS-LLSADGGPRDPTRAPARPGDQPPPPPQRLVFAPADEPRT 133
Query: 77 FTFDSPAELPSRTP 90
P L R P
Sbjct: 134 VLERKPLPLGVRAP 147
>gi|239757810 PREDICTED: similar to protein phosphatase 1,
regulatory (inhibitor) subunit 3F [Homo sapiens]
Length = 724
Score = 30.4 bits (67), Expect = 3.2
Identities = 18/52 (34%), Positives = 22/52 (42%)
Query: 10 PAAAAPRASGRCVIAPVRAVLRLRRRVCVLRKRRLLQPGGGPDVGTGAPRPG 61
PAA PR S +AP R + L + R +P GGP G A G
Sbjct: 19 PAAGEPRTSVEAAVAPRRVLFADEALGLPLAQLRRYRPWGGPGAGKMAAAAG 70
>gi|239756163 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 30.4 bits (67), Expect = 3.2
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 43 RLLQPGG--GPDVGTGAPRPGCSPRAPRADLDQPKFFTFDSPAELPSRTPRKKRRRSRLV 100
RL PGG GP G P P C P P + +F A LP R + R V
Sbjct: 134 RLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRF----PAAPLPPRLVAQVPSRPAAV 189
Query: 101 LYP 103
L+P
Sbjct: 190 LFP 192
>gi|239750683 PREDICTED: hypothetical protein XP_002347505 [Homo
sapiens]
Length = 193
Score = 30.4 bits (67), Expect = 3.2
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 43 RLLQPGG--GPDVGTGAPRPGCSPRAPRADLDQPKFFTFDSPAELPSRTPRKKRRRSRLV 100
RL PGG GP G P P C P P + +F A LP R + R V
Sbjct: 134 RLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRF----PAAPLPPRLVAQVPSRPAAV 189
Query: 101 LYP 103
L+P
Sbjct: 190 LFP 192
>gi|239744993 PREDICTED: hypothetical protein XP_002343324 [Homo
sapiens]
Length = 193
Score = 30.4 bits (67), Expect = 3.2
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 43 RLLQPGG--GPDVGTGAPRPGCSPRAPRADLDQPKFFTFDSPAELPSRTPRKKRRRSRLV 100
RL PGG GP G P P C P P + +F A LP R + R V
Sbjct: 134 RLRGPGGHKGPGPARGRPCPRCLPGLPGLPITHIRF----PAAPLPPRLVAQVPSRPAAV 189
Query: 101 LYP 103
L+P
Sbjct: 190 LFP 192
>gi|194294554 SET binding protein 1 isoform a [Homo sapiens]
Length = 1596
Score = 30.4 bits (67), Expect = 3.2
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 18/109 (16%)
Query: 3 RGQ-PSLEPAAAAPRASGRCVIAPVRAVLRLRRRVCVLRKRRLLQPGGGPDVGTGAPRPG 61
RGQ PSL P P AS ++A + AV+ + R L P P P P
Sbjct: 1485 RGQKPSLSPLVLEPAASQDTIMATIEAVIHMAREAPPLPPPP--PPPLPPPPPPPLPPPP 1542
Query: 62 CSPRAPRADLDQPKFFTFDSPAELPSRTP------------RKKRRRSR 98
P+ PR + K +PA+ P ++P K++R+SR
Sbjct: 1543 PLPKTPRGGKRKHKP---QAPAQPPQQSPPQQPLPQEEEVKAKRQRKSR 1588
>gi|58761532 protein phosphatase 1, regulatory (inhibitor) subunit
3F [Homo sapiens]
Length = 799
Score = 30.4 bits (67), Expect = 3.2
Identities = 18/52 (34%), Positives = 22/52 (42%)
Query: 10 PAAAAPRASGRCVIAPVRAVLRLRRRVCVLRKRRLLQPGGGPDVGTGAPRPG 61
PAA PR S +AP R + L + R +P GGP G A G
Sbjct: 19 PAAGEPRTSVEAAVAPRRVLFADEALGLPLAQLRRYRPWGGPGAGKMAAAAG 70
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 30.4 bits (67), Expect = 3.2
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 163 GQPAAVSRIVALMRDYLATHVHSRPL--LLALHGPSGVGKSHVGRLLARHFRSV------ 214
G P + S ++ +++ A ++H RPL + +H SGVG++ LL + V
Sbjct: 1359 GLPDSPSNLLRFIQEVHAHYLHQRPLHTPIIVHCSSGVGRTGAFALLYAAVQEVEAGNGI 1418
Query: 215 --LEDSALVLQYHARHHCPEARAAQDCREELARRVADVVAR 253
L ++ +H E + C E + R V V+ R
Sbjct: 1419 PELPQLVRRMRQQRKHMLQEKLHLRFCYEAVVRHVEQVLQR 1459
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 30.0 bits (66), Expect = 4.1
Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 6 PSLEPAAAAPR-ASGRCVIAPVRAVLRLRRRVCVLRKRRLLQPGGG---PDVGTGAPRPG 61
P PA + P A + AP R LRL R R+R P G P +G P P
Sbjct: 219 PVHAPARSHPEEARALALPAPTRVHLRLAARCVGRRRRERSDPPGSYHDPALGLRTPGPI 278
Query: 62 CSPRAPRA 69
R PRA
Sbjct: 279 LEGRGPRA 286
Score = 28.9 bits (63), Expect = 9.2
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 10 PAAAAPRASGRCVIAPVRAVLRLRRRVCVLRKRRLLQPGGGPDVGTGAPRPGCSPRAPRA 69
PAA AP AS C AP A R L +R L GG G P G +A A
Sbjct: 474 PAACAPCASAPC--APAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEA 531
Query: 70 DLDQPKFFTFDSPAELPS 87
+ + ++ PS
Sbjct: 532 ETNDTNGYSSGGGGHSPS 549
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 30.0 bits (66), Expect = 4.1
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 47 PGGGPDVGTGAPRPGCSPRAPRADLDQPKFFTFDSPAELPSRTPRKK 93
PGGG G PRP P P +P P LP PR+K
Sbjct: 837 PGGGAAEEEGVPRPRAPPEPPDPGAPRPP----PDPGPLPLPGPREK 879
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.137 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,767,828
Number of Sequences: 37866
Number of extensions: 833376
Number of successful extensions: 3855
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 3821
Number of HSP's gapped (non-prelim): 78
length of query: 423
length of database: 18,247,518
effective HSP length: 105
effective length of query: 318
effective length of database: 14,271,588
effective search space: 4538364984
effective search space used: 4538364984
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.