Guide to the Human Genome
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Name: IER3 Sequence: fasta or formatted (156aa) NCBI GI: 119964723
Description:

immediate early response 3

Referenced in:

Additional Stress Response Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         18           3
 C cysteine            1.9          3           1
 D aspartate           2.6          4           1
 E glutamate           5.8          9           2
 F phenylalanine       4.5          7           1
 G glycine             3.8          6           1
 H histidine           2.6          4           1
 I isoleucine          3.2          5           1
 K lysine              1.3          2           1
 L leucine            10.9         17           3
 M methionine          1.9          3           1
 N asparagine          1.9          3           1
 P proline            16.7         26           2
 Q glutamine           3.2          5           2
 R arginine            8.3         13           2
 S serine              7.7         12           1
 T threonine           5.8          9           1
 V valine              5.1          8           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   immediate early response 3 
C9orf167              0.081   hypothetical protein LOC54863 
SRCAP                 0.054   Snf2-related CBP activator protein 
KAT2A                 0.047   general control of amino acid synthesis 5-like 2 [H...
SETD1A                0.047   SET domain containing 1A 
LOC729580             0.041   PREDICTED: hypothetical protein 
LOC729580             0.041   PREDICTED: hypothetical protein 
LOC729580             0.041   PREDICTED: hypothetical protein 
DGKK                  0.041   diacylglycerol kinase kappa 
BCORL1                0.041   BCL6 co-repressor-like 1 
KIAA0284              0.041   hypothetical protein LOC283638 isoform 2 
KIAA0284              0.041   hypothetical protein LOC283638 isoform 1 
LOC400236             0.037   PREDICTED: hypothetical protein 
LOC400236             0.037   PREDICTED: hypothetical protein 
ANKRD33B              0.037   PREDICTED: ankyrin repeat domain 33B 
UBE2O                 0.037   ubiquitin-conjugating enzyme E2O 
TET3                  0.034   tet oncogene family member 3 
C10orf95              0.034   hypothetical protein LOC79946 
GRIN2C                0.034   N-methyl-D-aspartate receptor subunit 2C precursor [...
NACA                  0.034   nascent polypeptide-associated complex alpha subuni...
TPRX1                 0.031   tetra-peptide repeat homeobox 
LOC100127891          0.027   PREDICTED: similar to hCG2042508 
LOC100127891          0.027   PREDICTED: similar to hCG2042508 
LOC100127891          0.027   PREDICTED: similar to hCG2042508 
DAB2IP                0.027   disabled homolog 2 interacting protein isoform 2 [Ho...
DAB2IP                0.027   disabled homolog 2 interacting protein isoform 1 [Ho...
ZFPM1                 0.027   zinc finger protein, multitype 1 
ADRB1                 0.027   beta-1-adrenergic receptor 
TNRC18                0.027   trinucleotide repeat containing 18 
USP51                 0.027   ubiquitin specific protease 51 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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