Guide to the Human Genome
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Name: TPRKB Sequence: fasta or formatted (175aa) NCBI GI: 7705590
Description:

TP53RK binding protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6          8           2
 C cysteine            1.1          2           1
 D aspartate           4.6          8           1
 E glutamate           7.4         13           2
 F phenylalanine       2.9          5           1
 G glycine             4.6          8           1
 H histidine           1.7          3           1
 I isoleucine         10.9         19           2
 K lysine              8.6         15           2
 L leucine            12.6         22           3
 M methionine          2.9          5           1
 N asparagine          6.3         11           3
 P proline             2.9          5           1
 Q glutamine           4.6          8           1
 R arginine            2.9          5           2
 S serine              6.9         12           2
 T threonine           6.3         11           1
 V valine              6.3         11           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TP53RK binding protein 
NSUN5                 0.019   NOL1/NOP2/Sun domain family, member 5 isoform 1 [Hom...
NSUN5                 0.019   NOL1/NOP2/Sun domain family, member 5 isoform 2 [Homo...
ACACB                 0.010   acetyl-Coenzyme A carboxylase beta 
PDCD11                0.010   programmed cell death 11 
PRKDC                 0.010   protein kinase, DNA-activated, catalytic polypeptid...
PRKDC                 0.010   protein kinase, DNA-activated, catalytic polypeptide...
LOC731751             0.010   PREDICTED: similar to protein kinase, DNA-activated...
SYCP2                 0.010   synaptonemal complex protein 2 
KLK2                  0.006   kallikrein 2, prostatic isoform 1 
KLK2                  0.006   kallikrein 2, prostatic isoform 2 
SYNE2                 0.006   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.006   spectrin repeat containing, nuclear envelope 2 isof...
ZNF638                0.006   zinc finger protein 638 
ZNF638                0.006   zinc finger protein 638 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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