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Search of human proteins with 23097236
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23097236 homeobox A9 [Homo sapiens]
(272 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23097236 homeobox A9 [Homo sapiens] 573 e-164
gi|24497547 homeobox C9 [Homo sapiens] 239 2e-63
gi|15029508 homeobox B9 [Homo sapiens] 223 1e-58
gi|194363768 homeobox D9 [Homo sapiens] 220 9e-58
gi|24497533 homeobox C10 [Homo sapiens] 133 2e-31
gi|182765442 homeobox A10 isoform a [Homo sapiens] 128 5e-30
gi|23510366 homeobox D10 [Homo sapiens] 127 8e-30
gi|24497551 homeobox A10 isoform b [Homo sapiens] 124 7e-29
gi|5031759 homeobox A11 [Homo sapiens] 106 2e-23
gi|23510368 homeobox D11 [Homo sapiens] 103 2e-22
gi|7657166 homeobox C11 [Homo sapiens] 101 8e-22
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 97 1e-20
gi|24497513 homeobox A3 isoform a [Homo sapiens] 94 1e-19
gi|13562112 homeobox A3 isoform a [Homo sapiens] 94 1e-19
gi|11321638 homeobox C5 [Homo sapiens] 93 2e-19
gi|13489077 homeobox A6 [Homo sapiens] 93 3e-19
gi|12056969 homeobox C8 [Homo sapiens] 92 6e-19
gi|15029506 homeobox D8 [Homo sapiens] 91 1e-18
gi|85068580 homeobox B7 [Homo sapiens] 89 3e-18
gi|169636435 caudal type homeobox 2 [Homo sapiens] 89 5e-18
gi|13273317 homeobox B8 [Homo sapiens] 89 5e-18
gi|24497556 homeobox A7 [Homo sapiens] 87 1e-17
gi|24497517 homeobox A5 [Homo sapiens] 87 2e-17
gi|121114296 caudal type homeobox 1 [Homo sapiens] 87 2e-17
gi|23503237 homeobox B6 [Homo sapiens] 87 2e-17
gi|4504469 homeobox B5 [Homo sapiens] 86 3e-17
gi|24497515 homeobox A3 isoform b [Homo sapiens] 86 5e-17
gi|89257348 homeo box HB9 [Homo sapiens] 86 5e-17
gi|5031761 homeobox A1 isoform a [Homo sapiens] 85 8e-17
gi|19923391 homeobox D3 [Homo sapiens] 84 1e-16
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 573 bits (1477), Expect = e-164
Identities = 272/272 (100%), Positives = 272/272 (100%)
Query: 1 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA 60
MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA
Sbjct: 1 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA 60
Query: 61 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS 120
TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS
Sbjct: 61 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS 120
Query: 121 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA 180
FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA
Sbjct: 121 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA 180
Query: 181 ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA 240
ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA
Sbjct: 181 ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA 240
Query: 241 RLLNLTERQVKIWFQNRRMKMKKINKDRAKDE 272
RLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
Sbjct: 241 RLLNLTERQVKIWFQNRRMKMKKINKDRAKDE 272
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 239 bits (609), Expect = 2e-63
Identities = 136/275 (49%), Positives = 165/275 (60%), Gaps = 20/275 (7%)
Query: 1 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA 60
M+ TG + NYYVDS L+ D D L+ A G R + + + DF CSF K
Sbjct: 1 MSATGPISNYYVDS-LISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKP 59
Query: 61 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS 120
VF SW PV + + VYH P P D RYMR+WLEP GA+S
Sbjct: 60 AVFSTSWAPVPSQSS-----VVYH---------PYGPQPHLGADTRYMRTWLEPLSGAVS 105
Query: 121 FAGLPSS-RPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENN 179
F P+ R Y +KP+ RR DC + S DY GSP R++ P E +
Sbjct: 106 FPSFPAGGRHYALKPDAYPGRRADCGPGEGR--SYPDYMYGSPGELRDRAPQTLPSPEAD 163
Query: 180 A--ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRY 237
A ++ +K +DP+NP ANW+HARSTRKKRCPYTK+QTLELEKEFLFNMYLTRDRRY
Sbjct: 164 ALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRY 223
Query: 238 EVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE 272
EVAR+LNLTERQVKIWFQNRRMKMKK+NK++ E
Sbjct: 224 EVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKE 258
>gi|15029508 homeobox B9 [Homo sapiens]
Length = 250
Score = 223 bits (568), Expect = 1e-58
Identities = 126/271 (46%), Positives = 164/271 (60%), Gaps = 21/271 (7%)
Query: 1 MATTGALGNYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKA 60
M+ +G L +YYVDS + + +++ ++ G + AEH +F CSFQ KA
Sbjct: 1 MSISGTLSSYYVDSII--SHESEDAPPAKFPSGQYASSRQPGH--AEHLEFPSCSFQPKA 56
Query: 61 TVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALS 120
VFGASW P+ + ++P+ +HPY+ PQ A + RY+R+WLEP P
Sbjct: 57 PVFGASWAPLSPHASGSLPSV------YHPYIQPQGVPPA---ESRYLRTWLEPAPRG-- 105
Query: 121 FAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNA 180
P +K EPL G+ T SL + + G V ++P G +N
Sbjct: 106 -EAAPGQGQAAVKAEPLLGAPGELLKQGTPEYSL-ETSAGREAVLSNQRPGYG----DNK 159
Query: 181 ENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVA 240
E DK D NP+ANWLHARS+RKKRCPYTK+QTLELEKEFLFNMYLTRDRR+EVA
Sbjct: 160 ICEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVA 219
Query: 241 RLLNLTERQVKIWFQNRRMKMKKINKDRAKD 271
RLLNL+ERQVKIWFQNRRMKMKK+NK++ K+
Sbjct: 220 RLLNLSERQVKIWFQNRRMKMKKMNKEQGKE 250
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 220 bits (561), Expect = 9e-58
Identities = 150/349 (42%), Positives = 181/349 (51%), Gaps = 93/349 (26%)
Query: 1 MATTGALGNYYVDSFLLGADAADELSVGRYAP---GTLGQPPR----QAATLAEHPDFSP 53
M+++G L NYYVDS L+G + DE+ R+ P G G+P AAT AE F+
Sbjct: 11 MSSSGTLSNYYVDS-LIGHEG-DEVFAARFGPPGPGAQGRPAGVADGPAATAAE---FAS 65
Query: 54 CSFQSKATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLE 113
CSF ++ VF ASW+ V + PAA +HPYV P A+A+ GRY+RSW+E
Sbjct: 66 CSFAPRSAVFSASWSAV----PSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWME 121
Query: 114 PTPGALSFAGL------------PSSRP--------YGIKPEPLSARRGDCPTLDTHTLS 153
P PG AG PS P YGIKPE R P T S
Sbjct: 122 PLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPE---TRAAPAPATAASTTS 178
Query: 154 LTDYACGSPP------VDREKQPSEG------AFSENNAENESGGDKP------------ 189
+ + S V RE Q S G +F + A +GG P
Sbjct: 179 SSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGG 238
Query: 190 ------------------------------PIDPNNPAANWLHARSTRKKRCPYTKHQTL 219
+DPNNPAANW+HARSTRKKRCPYTK+QTL
Sbjct: 239 SSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTL 298
Query: 220 ELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268
ELEKEFLFNMYLTRDRRYEVAR+LNLTERQVKIWFQNRRMKMKK++K++
Sbjct: 299 ELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEK 347
>gi|24497533 homeobox C10 [Homo sapiens]
Length = 342
Score = 133 bits (334), Expect = 2e-31
Identities = 63/108 (58%), Positives = 81/108 (75%), Gaps = 3/108 (2%)
Query: 160 GSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTL 219
GSP +++ S + ++NE+ K I N NWL A+S RKKRCPYTKHQTL
Sbjct: 225 GSPSESEKERAKAADSSPDTSDNEA---KEEIKAENTTGNWLTAKSGRKKRCPYTKHQTL 281
Query: 220 ELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 267
ELEKEFLFNMYLTR+RR E+++ +NLT+RQVKIWFQNRRMK+KK+N++
Sbjct: 282 ELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRE 329
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 128 bits (322), Expect = 5e-30
Identities = 70/119 (58%), Positives = 83/119 (69%), Gaps = 9/119 (7%)
Query: 158 ACGS---PPVDREKQPSEGAFSE-NNAENESGGDKPPIDP-----NNPAANWLHARSTRK 208
ACGS D E S A E + A +ES P D AANWL A+S RK
Sbjct: 279 ACGSGGGSQGDEEAHASSSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRK 338
Query: 209 KRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 267
KRCPYTKHQTLELEKEFLFNMYLTR+RR E++R ++LT+RQVKIWFQNRRMK+KK+N++
Sbjct: 339 KRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRE 397
>gi|23510366 homeobox D10 [Homo sapiens]
Length = 340
Score = 127 bits (320), Expect = 8e-30
Identities = 64/110 (58%), Positives = 79/110 (71%), Gaps = 3/110 (2%)
Query: 158 ACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQ 217
A G P +R S E ES K I + P +NWL A+S RKKRCPYTKHQ
Sbjct: 221 AKGGLPEERSCLAEVSVSSPEVQEKES---KEEIKSDTPTSNWLTAKSGRKKRCPYTKHQ 277
Query: 218 TLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 267
TLELEKEFLFNMYLTR+RR E+++ +NLT+RQVKIWFQNRRMK+KK++++
Sbjct: 278 TLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSRE 327
>gi|24497551 homeobox A10 isoform b [Homo sapiens]
Length = 94
Score = 124 bits (312), Expect = 7e-29
Identities = 56/71 (78%), Positives = 67/71 (94%)
Query: 197 AANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQN 256
AANWL A+S RKKRCPYTKHQTLELEKEFLFNMYLTR+RR E++R ++LT+RQVKIWFQN
Sbjct: 11 AANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQN 70
Query: 257 RRMKMKKINKD 267
RRMK+KK+N++
Sbjct: 71 RRMKLKKMNRE 81
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 106 bits (265), Expect = 2e-23
Identities = 86/294 (29%), Positives = 124/294 (42%), Gaps = 36/294 (12%)
Query: 9 NYYVDSFLLGADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPC---SFQSKATVFGA 65
N Y+ S D S+ + P T P + + P P +F+ A
Sbjct: 12 NMYLPSCTYYVSGPDFSSLPSFLPQTPSSRPMTYSYSSNLPQVQPVREVTFREYAIEPAT 71
Query: 66 SWNP------------------VHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRY 107
W+P + A A VP V + Y HP P ++
Sbjct: 72 KWHPRGNLAHCYSAEELVHRDCLQAPSAAGVPGDVLAKSSANVYHHP-TPAVSSNFYSTV 130
Query: 108 MRSWLEPTPGALSFA---GLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPV 164
R+ + P F G P + P SA +G P + + A G+P
Sbjct: 131 GRNGVLPQAFDQFFETAYGTPENLASSDYPGDKSAEKGP-PAATATSAAAAAAATGAPAT 189
Query: 165 DREKQPSEGAFSENNAE-NESGGDKPPIDPNNPAANWLHARS---------TRKKRCPYT 214
G E A E + P ++P ++ H TRKKRCPYT
Sbjct: 190 SSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYT 249
Query: 215 KHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268
K+Q ELE+EF F++Y+ +++R +++R+LNLT+RQVKIWFQNRRMK KKIN+DR
Sbjct: 250 KYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDR 303
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 103 bits (256), Expect = 2e-22
Identities = 49/98 (50%), Positives = 73/98 (74%), Gaps = 2/98 (2%)
Query: 173 GAFSENNAENESG-GDKPPIDPN-NPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMY 230
G+ + AE G G+ PP + +++ + + +RKKRCPYTK+Q ELE+EF FN+Y
Sbjct: 231 GSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVY 290
Query: 231 LTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268
+ +++R +++R+LNLT+RQVKIWFQNRRMK KK+N+DR
Sbjct: 291 INKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRDR 328
>gi|7657166 homeobox C11 [Homo sapiens]
Length = 304
Score = 101 bits (251), Expect = 8e-22
Identities = 48/103 (46%), Positives = 67/103 (65%)
Query: 166 REKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEF 225
R + +E E N S G + +A TRKKRCPY+K Q ELE+EF
Sbjct: 192 RAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYSKFQIRELEREF 251
Query: 226 LFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268
FN+Y+ +++R +++R+LNLT+RQVKIWFQNRRMK KK+++DR
Sbjct: 252 FFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDR 294
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 97.1 bits (240), Expect = 1e-20
Identities = 72/189 (38%), Positives = 96/189 (50%), Gaps = 20/189 (10%)
Query: 83 YHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALSFAGLPSSRPYGIKPEPLSARRG 142
+HHHHHH + H Q A + + P+ S P S G PE S+
Sbjct: 70 HHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDS---GGPPELGSSP-- 124
Query: 143 DCPTLDTHTLSL-----TDYACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPA 197
P L +++ SL T AC P D +Q A S AE SGG + ++
Sbjct: 125 --PVLCSNSSSLGSSTPTGAACA--PGDYGRQ----ALSPAEAEKRSGGKRKSDSSDSQE 176
Query: 198 ANWLHARST--RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQ 255
N+ ++ RK+R +TK Q ELE EF + YLTR RRYE+A L+LTERQVK+WFQ
Sbjct: 177 GNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQ 236
Query: 256 NRRMKMKKI 264
NRRMK K++
Sbjct: 237 NRRMKWKRV 245
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 94.4 bits (233), Expect = 1e-19
Identities = 88/274 (32%), Positives = 112/274 (40%), Gaps = 64/274 (23%)
Query: 2 ATTGALGNYYVDSFLL-------GADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPC 54
A GA G Y+ + L G A ELS TL PP Q +L E P
Sbjct: 37 AALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLR--TLSAPPSQPPSLGEPP----- 89
Query: 55 SFQSKATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEP 114
+H A P A PQ P A P P
Sbjct: 90 ---------------LHPPPPQAAPPA------------PQPPQPAPQPPA--------P 114
Query: 115 TPGALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGA 174
TP A +S P P A P L++ T++ + P + +Q ++
Sbjct: 115 TPAAPPPPS-SASPPQNASNNPTPANAAKSPLLNSPTVAKQIF----PWMKESRQNTKQK 169
Query: 175 FSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRD 234
S +++ GDK P P S+++ R YT Q +ELEKEF FN YL R
Sbjct: 170 TSSSSSGESCAGDKSP--PGQA--------SSKRARTAYTSAQLVELEKEFHFNRYLCRP 219
Query: 235 RRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268
RR E+A LLNLTERQ+KIWFQNRRMK KK K +
Sbjct: 220 RRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGK 253
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 94.4 bits (233), Expect = 1e-19
Identities = 88/274 (32%), Positives = 112/274 (40%), Gaps = 64/274 (23%)
Query: 2 ATTGALGNYYVDSFLL-------GADAADELSVGRYAPGTLGQPPRQAATLAEHPDFSPC 54
A GA G Y+ + L G A ELS TL PP Q +L E P
Sbjct: 37 AALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLR--TLSAPPSQPPSLGEPP----- 89
Query: 55 SFQSKATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEP 114
+H A P A PQ P A P P
Sbjct: 90 ---------------LHPPPPQAAPPA------------PQPPQPAPQPPA--------P 114
Query: 115 TPGALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGA 174
TP A +S P P A P L++ T++ + P + +Q ++
Sbjct: 115 TPAAPPPPS-SASPPQNASNNPTPANAAKSPLLNSPTVAKQIF----PWMKESRQNTKQK 169
Query: 175 FSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRD 234
S +++ GDK P P S+++ R YT Q +ELEKEF FN YL R
Sbjct: 170 TSSSSSGESCAGDKSP--PGQA--------SSKRARTAYTSAQLVELEKEFHFNRYLCRP 219
Query: 235 RRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268
RR E+A LLNLTERQ+KIWFQNRRMK KK K +
Sbjct: 220 RRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGK 253
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 93.2 bits (230), Expect = 2e-19
Identities = 53/117 (45%), Positives = 68/117 (58%), Gaps = 10/117 (8%)
Query: 163 PVDREKQPSEGAFSENNAEN--ESGGDKPPIDPNNPAANWL------HARSTRKKRCPYT 214
P E+ S G E A+ +G +PP P W+ H ++ R YT
Sbjct: 106 PALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQ--IYPWMTKLHMSHETDGKRSRTSYT 163
Query: 215 KHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKD 271
++QTLELEKEF FN YLTR RR E+A L L ERQ+KIWFQNRRMK KK +K ++K+
Sbjct: 164 RYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKE 220
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 92.8 bits (229), Expect = 3e-19
Identities = 55/118 (46%), Positives = 67/118 (56%), Gaps = 10/118 (8%)
Query: 156 DYACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDP-------NNPAANWLHARSTRK 208
DY SP + S G + A ++ G D+ P N A ++ R+
Sbjct: 101 DYLHFSPEQQYKPDSSSG---QGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSHGRR 157
Query: 209 KRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
R YT++QTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNRRMK KK NK
Sbjct: 158 GRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENK 215
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 91.7 bits (226), Expect = 6e-19
Identities = 50/75 (66%), Positives = 56/75 (74%), Gaps = 4/75 (5%)
Query: 202 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKM 261
HA R R Y+++QTLELEKEFLFN YLTR RR EV+ L LTERQVKIWFQNRRMK
Sbjct: 145 HAPGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKW 204
Query: 262 KK-INKDR---AKDE 272
KK NKD+ A+DE
Sbjct: 205 KKENNKDKLPGARDE 219
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 90.5 bits (223), Expect = 1e-18
Identities = 86/253 (33%), Positives = 114/253 (45%), Gaps = 40/253 (15%)
Query: 42 AATLAEHPDFSPCSFQSKATVFGASWNPVHAAGANAVP-----AAVYHHH----HHHPYV 92
AA A +P + C F + HAA A A+ AA + H H HP
Sbjct: 22 AAGEAINPTYYDCHFAPEV-------GGRHAAAAAALQLYGNSAAGFPHAPPQAHAHP-- 72
Query: 93 HPQAPVAAAAPDGRYMRSWLEPTPG----ALSFAGLPSSRPYGIKPEPLSARRGDCPTLD 148
HP P + GR R PG A ++ P P+ P P C +
Sbjct: 73 HPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPPPPP----CGGIA 128
Query: 149 THTLSLTDYACGS---PPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAAN------ 199
H Y + P+ +Q +E + ++ SG D N +++
Sbjct: 129 CHGEPAKFYGYDNLQRQPIFTTQQEAE-LVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFP 187
Query: 200 WLHARST---RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQN 256
W+ ++ R+ R Y++ QTLELEKEFLFN YLTR RR EV+ L LTERQVKIWFQN
Sbjct: 188 WMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQN 247
Query: 257 RRMKMKK-INKDR 268
RRMK KK NKD+
Sbjct: 248 RRMKWKKENNKDK 260
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 89.4 bits (220), Expect = 3e-18
Identities = 66/178 (37%), Positives = 86/178 (48%), Gaps = 21/178 (11%)
Query: 93 HPQAPVAAAAPDGRYMRSWLEPTPGALSFAGLPSSRPY--GIKPEPLSARRGDCPTLDTH 150
+PQ P A + S PG AG ++ Y G EP S + H
Sbjct: 37 NPQRPGYGAGSGASFAASMQGLYPGGGGMAGQSAAGVYAAGYGLEPSS--------FNMH 88
Query: 151 TLSLTDYACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKR 210
G P D K + GA + +++ + + N W+ + T +KR
Sbjct: 89 CAPFEQNLSGVCPGDSAK--AAGAKEQRDSDLAA-------ESNFRIYPWMRSSGTDRKR 139
Query: 211 C--PYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
YT++QTLELEKEF +N YLTR RR E+A L LTERQ+KIWFQNRRMK KK NK
Sbjct: 140 GRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENK 197
>gi|169636435 caudal type homeobox 2 [Homo sapiens]
Length = 313
Score = 88.6 bits (218), Expect = 5e-18
Identities = 73/266 (27%), Positives = 106/266 (39%), Gaps = 55/266 (20%)
Query: 8 GNYYVDSFLLGADAADEL-SVGRYAPGTLGQPPRQAATLAEHPDFSPCSFQSKATVFGAS 66
G Y+V + A D S G P G P R+ + ++P + A
Sbjct: 41 GGYHVAAAAAAAANLDSAQSPGPSWPAAYGAPLRE-----DWNGYAPGGAAAAANAVAHG 95
Query: 67 WNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALSFAGLPS 126
N A A + +H HHHP+ HP P AA + +++ PG + A
Sbjct: 96 LNGGSPAAAMGYSSPADYHPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQ 155
Query: 127 SRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNAENESGG 186
P G RR C + ++P++ +
Sbjct: 156 LSPGG-------QRRNLCEWM--------------------RKPAQQSLGSQ-------- 180
Query: 187 DKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLT 246
+ R+ K R YT HQ LELEKEF ++ Y+T R+ E+A L L+
Sbjct: 181 --------------VKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLS 226
Query: 247 ERQVKIWFQNRRMKMKKINKDRAKDE 272
ERQVKIWFQNRR K +KINK + + +
Sbjct: 227 ERQVKIWFQNRRAKERKINKKKLQQQ 252
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 88.6 bits (218), Expect = 5e-18
Identities = 46/67 (68%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Query: 203 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMK 262
A R+ R Y+++QTLELEKEFLFN YLTR RR EV+ L LTERQVKIWFQNRRMK K
Sbjct: 143 AAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWK 202
Query: 263 K-INKDR 268
K NKD+
Sbjct: 203 KENNKDK 209
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 87.4 bits (215), Expect = 1e-17
Identities = 44/70 (62%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 200 WLHARSTRKKRC--PYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNR 257
W+ + +KR YT++QTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNR
Sbjct: 122 WMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 181
Query: 258 RMKMKKINKD 267
RMK KK +KD
Sbjct: 182 RMKWKKEHKD 191
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 87.0 bits (214), Expect = 2e-17
Identities = 74/204 (36%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 71 HAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALSFAGLPSSRPY 130
+AA A+A PA Y P + PD S + P+PG+ S G +S
Sbjct: 73 YAASASAAPA-------EPRYSQPATSTHSPQPDPLPC-SAVAPSPGSDSHHGGKNS--- 121
Query: 131 GIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNAENESGGDKPP 190
LS G + +S + G+ E P A SE + PP
Sbjct: 122 ------LSNSSGASADAGSTHISSRE-GVGTASGAEEDAP---ASSEQASAQSEPSPAPP 171
Query: 191 IDPN-NPAANWLHARST-------RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARL 242
P P LH ++ R YT++QTLELEKEF FN YLTR RR E+A
Sbjct: 172 AQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHA 231
Query: 243 LNLTERQVKIWFQNRRMKMKKINK 266
L L+ERQ+KIWFQNRRMK KK NK
Sbjct: 232 LCLSERQIKIWFQNRRMKWKKDNK 255
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 87.0 bits (214), Expect = 2e-17
Identities = 69/208 (33%), Positives = 92/208 (44%), Gaps = 23/208 (11%)
Query: 72 AAGANAVPAAVYHHHHHHPYVH----PQAPVAAAAPDGRYMRSWLEPT-PGALSFAGLPS 126
A G A P A + Y H P P A AP W PG + A P+
Sbjct: 29 AYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAAAYGPGPAAPAASPA 88
Query: 127 SRPYGIKPE--PLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNAENES 184
S +G P+ P+ A G P L L G+P ++P+ + +
Sbjct: 89 SLAFGPPPDFSPVPAPPGPGPGLLAQPLG----GPGTPSSPGAQRPTPYEWMRRSVAAGG 144
Query: 185 GGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLN 244
GG R+ K R YT HQ LELEKEF ++ Y+T R+ E+A L
Sbjct: 145 GGGSGK------------TRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLG 192
Query: 245 LTERQVKIWFQNRRMKMKKINKDRAKDE 272
LTERQVKIWFQNRR K +K+NK + + +
Sbjct: 193 LTERQVKIWFQNRRAKERKVNKKKQQQQ 220
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 86.7 bits (213), Expect = 2e-17
Identities = 52/110 (47%), Positives = 64/110 (58%), Gaps = 5/110 (4%)
Query: 162 PPVDREKQPSEGA-----FSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKH 216
PP E + S+ A F E + S P + N + S R+ R YT++
Sbjct: 97 PPFHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRY 156
Query: 217 QTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
QTLELEKEF +N YLTR RR E+A L LTERQ+KIWFQNRRMK KK +K
Sbjct: 157 QTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESK 206
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 85.9 bits (211), Expect = 3e-17
Identities = 41/60 (68%), Positives = 48/60 (80%)
Query: 207 RKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
++ R YT++QTLELEKEF FN YLTR RR E+A L L+ERQ+KIWFQNRRMK KK NK
Sbjct: 195 KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 254
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 85.5 bits (210), Expect = 5e-17
Identities = 48/101 (47%), Positives = 61/101 (60%), Gaps = 10/101 (9%)
Query: 168 KQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLF 227
+Q ++ S +++ GDK P P S+++ R YT Q +ELEKEF F
Sbjct: 5 RQNTKQKTSSSSSGESCAGDKSP--PGQA--------SSKRARTAYTSAQLVELEKEFHF 54
Query: 228 NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268
N YL R RR E+A LLNLTERQ+KIWFQNRRMK KK K +
Sbjct: 55 NRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGK 95
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 85.5 bits (210), Expect = 5e-17
Identities = 81/238 (34%), Positives = 102/238 (42%), Gaps = 25/238 (10%)
Query: 38 PPRQAATLAEHPDFSPCSFQSKATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAP 97
PPR LA H C+ K GA G + P HHH HP A
Sbjct: 80 PPR---LLAAH-----CALLPKPGFLGAGGGGGGTGGGHGGP-----HHHAHPGAAAAAA 126
Query: 98 VAAAAPDGRYMRSWLEPTPGALSFAGLPSSRP------YGIKPEPLSAR-RGDCPTLDTH 150
AAAA + L P GA AGLP+ YG +A G P L ++
Sbjct: 127 AAAAAAAAGGLALGLHPG-GAQGGAGLPAQAALYGHPVYGYSAAAAAAALAGQHPAL-SY 184
Query: 151 TLSLTDYACGSPPVDREKQPSEGAFSENN--AENESGGDKPPIDPNNPAANWLHARSTRK 208
+ A + P D K + G F + + +G P + N A R+
Sbjct: 185 SYPQVQGAHPAHPADPIKLGA-GTFQLDQWLRASTAGMILPKMPDFNSQAQSNLLGKCRR 243
Query: 209 KRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
R +T Q LELE +F N YL+R +R+EVA L LTE QVKIWFQNRRMK K+ K
Sbjct: 244 PRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 301
>gi|5031761 homeobox A1 isoform a [Homo sapiens]
Length = 335
Score = 84.7 bits (208), Expect = 8e-17
Identities = 72/228 (31%), Positives = 96/228 (42%), Gaps = 46/228 (20%)
Query: 84 HHHHHHPYVHPQAPVAAAAPD--GRYMRSWLEPTPGALSFAGLPSSRPYGIKPEP-LSAR 140
HHHHHH + HPQ + + Y S P+ G+ +F+ S PY + E +S
Sbjct: 65 HHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYS--PYALNQEADVSGG 122
Query: 141 RGDC-PTLDTHTLS------------LTDYACGSPPVDREKQPSE----------GAFSE 177
C P + + LS A GSP E + S
Sbjct: 123 YPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSLSP 182
Query: 178 NNAENESGGDKPPIDPNNPAA--NWLHARSTRKK----------------RCPYTKHQTL 219
+A ++ P + ++PA +W+ + K R +T Q
Sbjct: 183 LHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYLGQPNAVRTNFTTKQLT 242
Query: 220 ELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 267
ELEKEF FN YLTR RR E+A L L E QVKIWFQNRRMK KK K+
Sbjct: 243 ELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKE 290
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 84.3 bits (207), Expect = 1e-16
Identities = 71/229 (31%), Positives = 95/229 (41%), Gaps = 26/229 (11%)
Query: 38 PPRQAATLAEHPDFSPCSFQSKATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAP 97
PP A++L S CS QS A + + G+ P P
Sbjct: 52 PPAAASSLDTDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLN 111
Query: 98 VAAAAPDGRYMRSWLEPTPGALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDY 157
P L P+ G+P+ +P G G + + T+S +
Sbjct: 112 SEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKG----------GPNASSSSATISKQIF 161
Query: 158 ACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQ 217
KQ + A + + E++S P PA+ ++ R YT Q
Sbjct: 162 PWMKESRQNSKQKNSCATAGESCEDKS--------PPGPAS--------KRVRTAYTSAQ 205
Query: 218 TLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 266
+ELEKEF FN YL R RR E+A LLNLTERQ+KIWFQNRRMK KK K
Sbjct: 206 LVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 254
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,481,762
Number of Sequences: 37866
Number of extensions: 659241
Number of successful extensions: 3550
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 2471
Number of HSP's gapped (non-prelim): 726
length of query: 272
length of database: 18,247,518
effective HSP length: 101
effective length of query: 171
effective length of database: 14,423,052
effective search space: 2466341892
effective search space used: 2466341892
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.