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Search of human proteins with 22748805
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22748805 hypothetical protein LOC127703 [Homo sapiens]
(229 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22748805 hypothetical protein LOC127703 [Homo sapiens] 472 e-133
gi|58218984 single stranded DNA binding protein 4 isoform b [Hom... 44 2e-04
gi|14249150 single stranded DNA binding protein 4 isoform a [Hom... 44 2e-04
gi|40787999 single-stranded DNA binding protein 2 [Homo sapiens] 42 6e-04
gi|18959210 WIRE protein [Homo sapiens] 41 7e-04
gi|71999153 hypothetical protein LOC23334 [Homo sapiens] 41 0.001
gi|58218981 single stranded DNA binding protein 3 isoform c [Hom... 40 0.002
gi|91984781 ArfGAP with FG repeats 2 [Homo sapiens] 38 0.006
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 37 0.011
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 37 0.011
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 37 0.011
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 37 0.011
gi|91208420 bassoon protein [Homo sapiens] 37 0.014
gi|21264353 SWI/SNF related, matrix associated, actin dependent ... 37 0.014
gi|51477704 SWI/SNF related, matrix associated, actin dependent ... 37 0.014
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 37 0.014
gi|238908524 hypothetical protein LOC389333 [Homo sapiens] 37 0.018
gi|110347429 mediator complex subunit 12 [Homo sapiens] 37 0.018
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 37 0.018
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 37 0.018
gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens] 36 0.024
gi|190014610 transmembrane and coiled-coil domain family 1 isofo... 36 0.024
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 36 0.031
gi|110832843 TBP-associated factor 4 [Homo sapiens] 35 0.041
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 35 0.041
gi|51477702 SWI/SNF related, matrix associated, actin dependent ... 35 0.041
gi|21955170 single stranded DNA binding protein 3 isoform a [Hom... 35 0.041
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 35 0.041
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 35 0.053
gi|102467235 inner centromere protein antigens 135/155kDa isofor... 35 0.070
>gi|22748805 hypothetical protein LOC127703 [Homo sapiens]
Length = 229
Score = 472 bits (1214), Expect = e-133
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MFAIQPGLAEGGQFLGDPPPGLCQPELQPDSNSNFMASAKDANENWHGMPGRVEPILRRS 60
MFAIQPGLAEGGQFLGDPPPGLCQPELQPDSNSNFMASAKDANENWHGMPGRVEPILRRS
Sbjct: 1 MFAIQPGLAEGGQFLGDPPPGLCQPELQPDSNSNFMASAKDANENWHGMPGRVEPILRRS 60
Query: 61 SSESPSDNQAFQAPGSPEEGVRSPPEGAEIPGAEPEKMGGAGTVCSPLEDNGYASSSLSI 120
SSESPSDNQAFQAPGSPEEGVRSPPEGAEIPGAEPEKMGGAGTVCSPLEDNGYASSSLSI
Sbjct: 61 SSESPSDNQAFQAPGSPEEGVRSPPEGAEIPGAEPEKMGGAGTVCSPLEDNGYASSSLSI 120
Query: 121 DSRSSSPEPACGTPRGPGPPDPLLPSVAQAVQHLQVQERYKEQEKEKHHVHLVMYRRLAL 180
DSRSSSPEPACGTPRGPGPPDPLLPSVAQAVQHLQVQERYKEQEKEKHHVHLVMYRRLAL
Sbjct: 121 DSRSSSPEPACGTPRGPGPPDPLLPSVAQAVQHLQVQERYKEQEKEKHHVHLVMYRRLAL 180
Query: 181 LQWIRGLQHQLIDQQARLQESFDTILDNRKELIRCLQQRAAPSRPQDQA 229
LQWIRGLQHQLIDQQARLQESFDTILDNRKELIRCLQQRAAPSRPQDQA
Sbjct: 181 LQWIRGLQHQLIDQQARLQESFDTILDNRKELIRCLQQRAAPSRPQDQA 229
>gi|58218984 single stranded DNA binding protein 4 isoform b [Homo
sapiens]
Length = 363
Score = 43.5 bits (101), Expect = 2e-04
Identities = 43/140 (30%), Positives = 53/140 (37%), Gaps = 18/140 (12%)
Query: 13 QFLGDPPPGLCQPELQP---DSNSNFMASAKDANENWHGMPGRVEPILRRSSSESPSDNQ 69
+F G P P L P P + + A + + G P P+ R +P
Sbjct: 129 RFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQR----VTPPRGM 184
Query: 70 AFQAPGSPEEGVRSPPEGAEIPGAEPEKMGGA--GTVCSPLEDNGYASSSLSIDSRSSSP 127
A P S G+R PP PG MG G SP S SI SSSP
Sbjct: 185 ASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASP--------SGNSIPYSSSSP 236
Query: 128 EPACGTPRGPGPP-DPLLPS 146
G P G GPP P++PS
Sbjct: 237 GSYTGPPGGGGPPGTPIMPS 256
>gi|14249150 single stranded DNA binding protein 4 isoform a [Homo
sapiens]
Length = 385
Score = 43.5 bits (101), Expect = 2e-04
Identities = 43/140 (30%), Positives = 53/140 (37%), Gaps = 18/140 (12%)
Query: 13 QFLGDPPPGLCQPELQP---DSNSNFMASAKDANENWHGMPGRVEPILRRSSSESPSDNQ 69
+F G P P L P P + + A + + G P P+ R +P
Sbjct: 151 RFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQR----VTPPRGM 206
Query: 70 AFQAPGSPEEGVRSPPEGAEIPGAEPEKMGGA--GTVCSPLEDNGYASSSLSIDSRSSSP 127
A P S G+R PP PG MG G SP S SI SSSP
Sbjct: 207 ASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASP--------SGNSIPYSSSSP 258
Query: 128 EPACGTPRGPGPP-DPLLPS 146
G P G GPP P++PS
Sbjct: 259 GSYTGPPGGGGPPGTPIMPS 278
>gi|40787999 single-stranded DNA binding protein 2 [Homo sapiens]
Length = 361
Score = 41.6 bits (96), Expect = 6e-04
Identities = 48/166 (28%), Positives = 68/166 (40%), Gaps = 30/166 (18%)
Query: 4 IQPGLAEGGQFLGDPPPGLCQPELQPDSNSNFMASAKDANENWHGMPGRVEPILRRSSSE 63
I PG G +G PPG QP + P + N+ G+PG +P+L S
Sbjct: 107 IPPG---DGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQALGGVPGS-QPLL--PSGM 160
Query: 64 SPSDNQAFQAPGSPEEGVRSPPEGAEIPGAEPEKMGGAGTVCSPLEDNG----------- 112
P+ Q G P + + +PP G G P+ GGA + PL G
Sbjct: 161 DPTRQQGHPNMGGPMQRM-TPPRGMVPLG--PQNYGGA--MRPPLNALGGPGMPGMNMGP 215
Query: 113 -------YASSSLSIDSRSSSPEPACGTPRGPGPP-DPLLPSVAQA 150
+++ SI S+SP G P G GPP P++PS A +
Sbjct: 216 GGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPADS 261
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 41.2 bits (95), Expect = 7e-04
Identities = 37/133 (27%), Positives = 48/133 (36%), Gaps = 4/133 (3%)
Query: 12 GQFLGDPPPGLCQPELQPDSNSN-FMASAKDANENWHGMPGRVEPILRRSSSESPSDNQA 70
GQ L PPP QP P+ S+ SA + + + + + +R + P+
Sbjct: 245 GQSLAPPPPPYRQPPGVPNGPSSPTNESAPELPQRHNSLHRKTPGPVRGLAPPPPTSASP 304
Query: 71 FQAPGSPEEGVRSPPE-GAEIPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDSRSSSPEP 129
P R PP GA P P GA +P Y SR P P
Sbjct: 305 SLLSNRPPPPARDPPSRGAAPPPPPPVIRNGARD--APPPPPPYRMHGSEPPSRGKPPPP 362
Query: 130 ACGTPRGPGPPDP 142
TP GP PP P
Sbjct: 363 PSRTPAGPPPPPP 375
Score = 28.9 bits (63), Expect = 3.8
Identities = 38/141 (26%), Positives = 51/141 (36%), Gaps = 24/141 (17%)
Query: 7 GLAEGGQFLGDPPPGLCQP---ELQPDSNSNFMASAKDANENWHGMPGRVEPILRRSSSE 63
G GG L P GL Q +L+P AKD +EN G P P R ++
Sbjct: 73 GYGSGGAAL-QPKGGLFQGGVLKLRP-------VGAKDGSENLAGKPALQIPSSRAAAPR 124
Query: 64 SPSDNQAFQAPGSPEEGVRSPPEGA-EIPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDS 122
P A G P++ S E+P + + P +SS +
Sbjct: 125 PPVS----AASGRPQDDTDSSRASLPELPRMQRPSL--------PDLSRPNTTSSTGMKH 172
Query: 123 RSSSPEPACGTPRGPGPPDPL 143
SS+P P R PP PL
Sbjct: 173 SSSAPPPPPPGRRANAPPTPL 193
>gi|71999153 hypothetical protein LOC23334 [Homo sapiens]
Length = 2533
Score = 40.8 bits (94), Expect = 0.001
Identities = 43/143 (30%), Positives = 53/143 (37%), Gaps = 37/143 (25%)
Query: 29 PDSNSNFMASAKDANEN----------WHGMPGRVEPILRRSSSESPSDNQAFQAPGSPE 78
PDS F+A+ + + WH R E I + + SP QAPGSPE
Sbjct: 875 PDSGFFFVAAGQQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASP------QAPGSPE 928
Query: 79 EGVRSP-------PEGAEIPGAEP--EKMGGAGTVCSPLEDNGYASSSLSIDSRSSSPEP 129
+ P P+G PG M G+V S + GY S DS P
Sbjct: 929 DSEGVPLISLPRVPQGGSQPGPSRGLSLMSSQGSVDS--DHLGYDGGSSGSDSEG--PND 984
Query: 130 ACG--------TPRGPGPPDPLL 144
G TP GP PP P L
Sbjct: 985 TLGEKAPFTLRTPPGPAPPQPSL 1007
Score = 27.7 bits (60), Expect = 8.5
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 84 PPEGAEIPGAEP---EKMGGAGTVCSPLEDNGYASSSLSIDSRSSSP-EPACGTPRGPGP 139
PP+G +P + K GG GT G A +L+ +P A P PGP
Sbjct: 1369 PPQGG-LPDLDIYLYNKPGGQGT-----GGKGVACITLAFVDEGGAPLSLALWPPSSPGP 1422
Query: 140 PDPL 143
PDPL
Sbjct: 1423 PDPL 1426
>gi|58218981 single stranded DNA binding protein 3 isoform c [Homo
sapiens]
Length = 361
Score = 40.0 bits (92), Expect = 0.002
Identities = 43/153 (28%), Positives = 61/153 (39%), Gaps = 24/153 (15%)
Query: 16 GDPPPGLCQPELQPDSNSNFMASAKDANENWHGMPGRVEPILRRSSSESPSDNQAFQAPG 75
G PPG QP + P + N+ G+PG +P+L +S P+ Q G
Sbjct: 114 GPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPG-TQPLL--PNSMDPTRQQGHPNMG 170
Query: 76 SPEEGVRSPPEGAEIPGAEPEKMGGAGTVCSPLEDNGYA-----------------SSSL 118
+ + +PP G G P+ G + P G A +S+
Sbjct: 171 GSMQRM-NPPRGMGPMGPGPQNYGSG--MRPPPNSLGPAMPGINMGPGAGRPWPNPNSAN 227
Query: 119 SIDSRSSSPEPACGTPRGPGPP-DPLLPSVAQA 150
SI SSSP G P G GPP P++PS A +
Sbjct: 228 SIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADS 260
>gi|91984781 ArfGAP with FG repeats 2 [Homo sapiens]
Length = 481
Score = 38.1 bits (87), Expect = 0.006
Identities = 37/139 (26%), Positives = 53/139 (38%), Gaps = 6/139 (4%)
Query: 5 QPGLAEGGQFLGDPPPGLCQPELQPDSNSNFMASAKDANENWHGMPGRVEPILRRSSSES 64
Q G A F P + L P ++F A A + G P P+ S S
Sbjct: 256 QGGFANFDAFSSGPSSSVFG-SLPPAGQASFQAQPTPAGSS-QGTPFGATPLAPASQPNS 313
Query: 65 PSDNQAFQAPGSPEEGVRSPPEG--AEIPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDS 122
+D +F PG P GV S G ++P + MGG G + L + + + +
Sbjct: 314 LADVGSFLGPGVPAAGVPSSLFGMAGQVPPLQSVTMGGGGGSSTGLAFGAFTNPFTAPAA 373
Query: 123 RSSSPEPACGTPRG--PGP 139
+S P P G PGP
Sbjct: 374 QSPLPSTNPFQPNGLAPGP 392
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 37.4 bits (85), Expect = 0.011
Identities = 37/112 (33%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 29 PDSNSNFMASAKDANENWHGMPGRVEPILRRSSSESPSDNQAFQAPGSPEEGVRSPPEGA 88
P + S MA KD+ G G+ E + +S E + +QA + GSP E R P +GA
Sbjct: 699 PTTTSQLMAE-KDS-----GPAGQPE---KPASQEVSTPSQA-RGEGSPSEATRLPTQGA 748
Query: 89 EIPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDSRSSSPEPACGTPRGPGPP 140
A P K G L SSLS + P A G GPG P
Sbjct: 749 RSSAAFPPKTSPGGGEVPCLYKPHCHQSSLSREVAVVMPTLARGGAAGPGEP 800
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 37.4 bits (85), Expect = 0.011
Identities = 37/112 (33%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 29 PDSNSNFMASAKDANENWHGMPGRVEPILRRSSSESPSDNQAFQAPGSPEEGVRSPPEGA 88
P + S MA KD+ G G+ E + +S E + +QA + GSP E R P +GA
Sbjct: 699 PTTTSQLMAE-KDS-----GPAGQPE---KPASQEVSTPSQA-RGEGSPSEATRLPTQGA 748
Query: 89 EIPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDSRSSSPEPACGTPRGPGPP 140
A P K G L SSLS + P A G GPG P
Sbjct: 749 RSSAAFPPKTSPGGGEVPCLYKPHCHQSSLSREVAVVMPTLARGGAAGPGEP 800
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 37.4 bits (85), Expect = 0.011
Identities = 37/112 (33%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 29 PDSNSNFMASAKDANENWHGMPGRVEPILRRSSSESPSDNQAFQAPGSPEEGVRSPPEGA 88
P + S MA KD+ G G+ E + +S E + +QA + GSP E R P +GA
Sbjct: 699 PTTTSQLMAE-KDS-----GPAGQPE---KPASQEVSTPSQA-RGEGSPSEATRLPTQGA 748
Query: 89 EIPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDSRSSSPEPACGTPRGPGPP 140
A P K G L SSLS + P A G GPG P
Sbjct: 749 RSSAAFPPKTSPGGGEVPCLYKPHCHQSSLSREVAVVMPTLARGGAAGPGEP 800
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 37.4 bits (85), Expect = 0.011
Identities = 29/100 (29%), Positives = 36/100 (36%), Gaps = 1/100 (1%)
Query: 45 NWHGMPGRVEPILRRSSSESPSDNQAFQAPGSPEEGVRSPPEGAEIPGAEPEKMGGAGTV 104
N G PG P + P A P P EG S P P G G++
Sbjct: 948 NLQGPPGPPGPQGPKGDKGDPGVPGALGIPSGPSEGGSSSTMYVSGPPGPPGPPGPPGSI 1007
Query: 105 CSPLED-NGYASSSLSIDSRSSSPEPACGTPRGPGPPDPL 143
S ++ Y S + DS S G P PGPP P+
Sbjct: 1008 SSSGQEIQQYISEYMQSDSIRSYLSGVQGPPGPPGPPGPV 1047
Score = 29.6 bits (65), Expect = 2.2
Identities = 38/141 (26%), Positives = 50/141 (35%), Gaps = 6/141 (4%)
Query: 16 GDPPPGLCQPELQPDSNSNFMASAKDANENWHGMPGRVEPILRRSSSESPSDNQAFQA-P 74
G P GL P P S F+++++ G PG P P +Q Q P
Sbjct: 880 GPPGEGLPGPPGPPGS---FLSNSETFLSGPPGPPGPPGP-KGDQGPPGPRGHQGEQGLP 935
Query: 75 GSPEEGVRSPPEGAEIPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDSRSSSPEPACGTP 134
G G S + P P G G P S + SSS G P
Sbjct: 936 GFSTSGSSSFGLNLQGPPGPPGPQGPKGDKGDPGVPGALGIPSGPSEGGSSSTMYVSGPP 995
Query: 135 RGPGPPDPLLPSVAQAVQHLQ 155
PGPP P S++ + Q +Q
Sbjct: 996 GPPGPPGP-PGSISSSGQEIQ 1015
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 37.0 bits (84), Expect = 0.014
Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 18/88 (20%)
Query: 65 PSDNQAFQAPGSPEEGVRSPPEGAEIPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDSRS 124
PS ++ A SP SP +E P P KMG T +++
Sbjct: 1466 PSRAYSYFASSSPP---LSPSSPSESPTFSPGKMGPRATA--------------EFSTQT 1508
Query: 125 SSPEPACGTPRGPGPPDPLLPSVAQAVQ 152
SP PA PR PG P P P VAQ Q
Sbjct: 1509 PSPAPASDMPRSPGAPTP-SPMVAQGTQ 1535
Score = 28.1 bits (61), Expect = 6.5
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 84 PPEGAEIPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDSRSSSPEPACGTPRGPGP 139
PP GA PG P GAG S G ++ + S + P P G GPGP
Sbjct: 17 PPGGAG-PGPGPGPGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPGPGPGPGPGP 71
>gi|21264353 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 1
[Homo sapiens]
Length = 470
Score = 37.0 bits (84), Expect = 0.014
Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 9/154 (5%)
Query: 72 QAPGSPEEGVRSPPEGAEIPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDSRSSSPEPAC 131
Q PG P G R P +GA + MG SP G A + + + ++P P
Sbjct: 13 QRPGMPS-GARMPHQGAPMGPPGSPYMG------SPAVRPGLAPAGMEPARKRAAPPPGQ 65
Query: 132 GTPRGPGPPDPLLPSVAQAVQHLQVQERYKEQEKEKHHVHLVMYRRLALLQWIRGLQHQL 191
+ G P P P+ +++ + ++ ++ Q + Y + LL + R L +
Sbjct: 66 SQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAY--MDLLAFERKLDQTI 123
Query: 192 IDQQARLQESFDTILDNRKELIRCLQQRAAPSRP 225
+ ++ +QE+ + +++L + P++P
Sbjct: 124 MRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKP 157
>gi|51477704 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 1
[Homo sapiens]
Length = 470
Score = 37.0 bits (84), Expect = 0.014
Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 9/154 (5%)
Query: 72 QAPGSPEEGVRSPPEGAEIPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDSRSSSPEPAC 131
Q PG P G R P +GA + MG SP G A + + + ++P P
Sbjct: 13 QRPGMPS-GARMPHQGAPMGPPGSPYMG------SPAVRPGLAPAGMEPARKRAAPPPGQ 65
Query: 132 GTPRGPGPPDPLLPSVAQAVQHLQVQERYKEQEKEKHHVHLVMYRRLALLQWIRGLQHQL 191
+ G P P P+ +++ + ++ ++ Q + Y + LL + R L +
Sbjct: 66 SQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAY--MDLLAFERKLDQTI 123
Query: 192 IDQQARLQESFDTILDNRKELIRCLQQRAAPSRP 225
+ ++ +QE+ + +++L + P++P
Sbjct: 124 MRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKP 157
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 37.0 bits (84), Expect = 0.014
Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 15/161 (9%)
Query: 62 SESPSDNQAFQAPGSPEEGVRSPPEG----AEIPGAEPEKMGGAGTVCSPLEDNGYASSS 117
++S D+Q EE PP G +P P G A P N S
Sbjct: 1218 ADSGGDSQEESELDDQEEPPFVPPPGYMMYTVLPDGSPVPQGMALYAPPPPLPNN--SRP 1275
Query: 118 LSIDSRSSSPEPACGTPR--GPGPPDPLLPSVAQAVQHLQVQERYKEQEK----EKHHVH 171
L+ + P PA G P GP PP+ +P + V H V E + + + E H
Sbjct: 1276 LTPGTVVYGPPPA-GAPMVYGPPPPNFSIPFIPMGVLHCNVPEHHNLENEVSRLEDIMQH 1334
Query: 172 LVMYRRLALLQWIRGLQHQLIDQQARLQESFDTILDNRKEL 212
L +R +W+R + Q + L + D +L +K L
Sbjct: 1335 LKSKKREE--RWMRASKRQSEKEMEELHHNIDDLLQEKKSL 1373
>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
Length = 1015
Score = 36.6 bits (83), Expect = 0.018
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 23/106 (21%)
Query: 48 GMPGRVEPILRRSSSESPSDNQAFQAPGSPEEGVRSPPE---GAEIPGAEPEKMGGAGTV 104
G+P ++ R S S + APGSPE PP+ A+ P P G G
Sbjct: 12 GIPRQLPTAPARRQDSSGSSGSYYTAPGSPE-----PPDVGPDAKGPANWPWVAPGRGAG 66
Query: 105 CSPLEDNGYASSSLSIDSRSSSPE--PACGTPRGPG----PPDPLL 144
P LS+ +++S P G PRGPG PP P L
Sbjct: 67 AQP---------RLSVSAQNSRQRHGPGSGFPRGPGSGPRPPQPQL 103
>gi|110347429 mediator complex subunit 12 [Homo sapiens]
Length = 2177
Score = 36.6 bits (83), Expect = 0.018
Identities = 23/87 (26%), Positives = 43/87 (49%)
Query: 143 LLPSVAQAVQHLQVQERYKEQEKEKHHVHLVMYRRLALLQWIRGLQHQLIDQQARLQESF 202
+LP Q Q Q Q++ ++Q++++ R+ Q +R Q Q QQ + Q+
Sbjct: 2047 ILPEQQQQQQQQQQQQQQQQQQQQQQQQQQYHIRQQQQQQILRQQQQQQQQQQQQQQQQQ 2106
Query: 203 DTILDNRKELIRCLQQRAAPSRPQDQA 229
+++ + QQ+AAP +PQ Q+
Sbjct: 2107 QQQQQQQQQHQQQQQQQAAPPQPQPQS 2133
Score = 35.0 bits (79), Expect = 0.053
Identities = 32/97 (32%), Positives = 38/97 (39%), Gaps = 24/97 (24%)
Query: 70 AFQAPGSPEEGVRSPPEGAEIPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDSRSS---- 125
AF APG PP + P +PE G+ S LED G S S+ ID SS
Sbjct: 625 AFGAPGP------RPPSPFDDPADDPEHKEAEGSSSSKLEDPG-LSESMDIDPSSSVLFE 677
Query: 126 ----------SPEPACGTPRGPGPPDPLLPSVAQAVQ 152
SP C G G P P P V + V+
Sbjct: 678 DMEKPDFSLFSPTMPC---EGKGSPSPEKPDVEKEVK 711
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 36.6 bits (83), Expect = 0.018
Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 32/209 (15%)
Query: 21 GLCQPELQPDSNSNFMASAKDANENWHGMPGRV----EPILRRSSSESPSDNQ-AFQA-- 73
G+ + D S+ AK +E + + R+ I + S S SD A Q+
Sbjct: 31 GVAHSKSSKDMESHVFLKAKTRDE-YLSLVARLIIHFRDIHNKKSQASVSDPMNALQSLT 89
Query: 74 --PGSPEEGVRSPPEGAEIPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDSRSSSPEPAC 131
P + G+ PP G PG MG G + P+ S S +P
Sbjct: 90 GGPAAGAAGIGMPPRG---PGQSLGGMGSLGAMGQPM---------------SLSGQPPP 131
Query: 132 GTPRGPGPPDPLLPSVAQAVQHLQVQERYKEQEKEKHHVHLVMYRRLALLQWIRGLQHQL 191
GT G P + S A LQ+Q+ +Q++++ ++ AL Q + Q Q
Sbjct: 132 GTS-GMAPHSMAVVSTATPQTQLQLQQVALQQQQQQQQFQ--QQQQAALQQQQQQQQQQQ 188
Query: 192 ID-QQARLQESFDTILDNRKELIRCLQQR 219
QQ+ +Q+ F ++ +++L + QQ+
Sbjct: 189 FQAQQSAMQQQFQAVVQQQQQLQQQQQQQ 217
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 36.6 bits (83), Expect = 0.018
Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 32/209 (15%)
Query: 21 GLCQPELQPDSNSNFMASAKDANENWHGMPGRV----EPILRRSSSESPSDNQ-AFQA-- 73
G+ + D S+ AK +E + + R+ I + S S SD A Q+
Sbjct: 31 GVAHSKSSKDMESHVFLKAKTRDE-YLSLVARLIIHFRDIHNKKSQASVSDPMNALQSLT 89
Query: 74 --PGSPEEGVRSPPEGAEIPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDSRSSSPEPAC 131
P + G+ PP G PG MG G + P+ S S +P
Sbjct: 90 GGPAAGAAGIGMPPRG---PGQSLGGMGSLGAMGQPM---------------SLSGQPPP 131
Query: 132 GTPRGPGPPDPLLPSVAQAVQHLQVQERYKEQEKEKHHVHLVMYRRLALLQWIRGLQHQL 191
GT G P + S A LQ+Q+ +Q++++ ++ AL Q + Q Q
Sbjct: 132 GTS-GMAPHSMAVVSTATPQTQLQLQQVALQQQQQQQQFQ--QQQQAALQQQQQQQQQQQ 188
Query: 192 ID-QQARLQESFDTILDNRKELIRCLQQR 219
QQ+ +Q+ F ++ +++L + QQ+
Sbjct: 189 FQAQQSAMQQQFQAVVQQQQQLQQQQQQQ 217
>gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens]
Length = 1426
Score = 36.2 bits (82), Expect = 0.024
Identities = 41/140 (29%), Positives = 53/140 (37%), Gaps = 15/140 (10%)
Query: 15 LGDPPPGLCQPEL------QPDSNSNFMASAKDANENW--HGMP---GRVE--PILRRSS 61
+ P P + P L QP S+SN M S N HG+P G + PI+ S
Sbjct: 1065 ISGPNPVVPMPTLSPMGMTQPLSHSNQMPSPNAVGPNIPPHGVPMGPGLMSHNPIMGHGS 1124
Query: 62 SESPSDNQAFQAPGSPEEGVRSPPEGAEIPGAEPEKMGGAGTVCSPLEDNGYASSSLSID 121
E P Q V+SPP+ P P GG G+ + G +
Sbjct: 1125 QEPPMVPQGRMGFPQGFPPVQSPPQQVPFPHNGPS--GGQGSFPGGMGFPGEGPLGRPSN 1182
Query: 122 SRSSSPEPACGTPRGPGPPD 141
SS + A P GPG PD
Sbjct: 1183 LPQSSADAALCKPGGPGGPD 1202
>gi|190014610 transmembrane and coiled-coil domain family 1 isoform
a [Homo sapiens]
Length = 653
Score = 36.2 bits (82), Expect = 0.024
Identities = 36/130 (27%), Positives = 49/130 (37%), Gaps = 8/130 (6%)
Query: 13 QFLGDPPPGL----CQPELQPDSNSNFMASAKDANENWHGMPGRVEPIL---RRSSSESP 65
Q DP PG + Q +S +A EN + + ++ + RR SS SP
Sbjct: 8 QLFEDPDPGGKSQDAEARKQTESEQKLSKMTHNALENINVIGQGLKHLFQHQRRRSSVSP 67
Query: 66 SDNQAFQAPGSPEEGVRSPPEGAEIPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDSRSS 125
D Q QA PE + S AEI G P V + S+ SR
Sbjct: 68 HDVQQIQADPEPEMDLESQNACAEIDGV-PTHPTALNRVLQQIRVPPKMKRGTSLHSRRG 126
Query: 126 SPEPACGTPR 135
PE G+P+
Sbjct: 127 KPEAPKGSPQ 136
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 35.8 bits (81), Expect = 0.031
Identities = 30/79 (37%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 77 PEEGVRSPP-EGAEIPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDSRSSSPEPACGTPR 135
P G R PP EGA+ GA + GGAG ED D +++P A G PR
Sbjct: 1273 PGPGPRRPPWEGADA-GAAGGEAGGAGAPGPAEEDGEDEDEDEEEDEEAAAPGAAAG-PR 1330
Query: 136 GPG----PPDPLLPSVAQA 150
GPG P P++ S A A
Sbjct: 1331 GPGRARAAPVPVVVSSADA 1349
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 35.4 bits (80), Expect = 0.041
Identities = 28/99 (28%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 58 RRSSSESPSDNQAFQAPGSPEEGVRSPPEG-----AEIPGAEPEKMGGAGTVCSPLEDNG 112
+R SP P P +R PPEG A +P A G P + G
Sbjct: 103 QRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAG 162
Query: 113 YASSSLSIDSRSSSPEPACGTPRGPGPPDPLLPSVAQAV 151
A+ + P P G GPGP P P AQ +
Sbjct: 163 PAALAARA---GPGPGPGPGPGPGPGPGKPAGPGAAQTL 198
Score = 28.9 bits (63), Expect = 3.8
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 73 APGSPEEGVRSPPEGA---EIPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDSRSSSPEP 129
AP +PE VR+ GA + P GAG +P E A+ R+ P
Sbjct: 44 APRTPE--VRAAAAGALGNHVVSGSPAGAAGAGPA-APAEGAPGAAPEPPPAGRA---RP 97
Query: 130 ACGTPRGPGPPDPLLPSV 147
G P+ PGPP P P V
Sbjct: 98 GGGGPQRPGPPSPRRPLV 115
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 35.4 bits (80), Expect = 0.041
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 17/112 (15%)
Query: 55 PILRRSSSESPSDNQAFQAPGSPEEGVRSPPEGAEIPGAEPEKMGGA---------GTVC 105
P + + P+ + AP +P PP A P EPE+ A G
Sbjct: 512 PAAPSTPAPPPAVPKELPAPPAP------PPASAPTPETEPEEPAQAPPAQSTPTPGVAA 565
Query: 106 SP-LEDNGYASSSLSIDSRSSSP-EPACGTPRGPGPPDPLLPSVAQAVQHLQ 155
+P L G ++SS S S +SP EP + GP PP+ + P V ++
Sbjct: 566 APTLVSGGGSTSSTSSGSFEASPVEPQLPSKEGPEPPEEVPPPTTPPVPKVE 617
>gi|51477702 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 2
[Homo sapiens]
Length = 483
Score = 35.4 bits (80), Expect = 0.041
Identities = 31/152 (20%), Positives = 64/152 (42%), Gaps = 9/152 (5%)
Query: 74 PGSPEEGVRSPPEGAEIPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDSRSSSPEPACGT 133
PG P G R P +GA + MG SP G A + + + ++P P
Sbjct: 28 PGMPS-GARMPHQGAPMGPPGSPYMG------SPAVRPGLAPAGMEPARKRAAPPPGQSQ 80
Query: 134 PRGPGPPDPLLPSVAQAVQHLQVQERYKEQEKEKHHVHLVMYRRLALLQWIRGLQHQLID 193
+ G P P P+ +++ + ++ ++ Q + Y + LL + R L ++
Sbjct: 81 AQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAY--MDLLAFERKLDQTIMR 138
Query: 194 QQARLQESFDTILDNRKELIRCLQQRAAPSRP 225
++ +QE+ + +++L + P++P
Sbjct: 139 KRVDIQEALKRPMKQKRKLRLYISNTFNPAKP 170
>gi|21955170 single stranded DNA binding protein 3 isoform a [Homo
sapiens]
Length = 388
Score = 35.4 bits (80), Expect = 0.041
Identities = 44/140 (31%), Positives = 61/140 (43%), Gaps = 22/140 (15%)
Query: 15 LGDPPPGLCQPELQPDSNSNFMASAKDANENWHGMPGRVEPILRRSSSESPSDNQAFQAP 74
+G+ PPG P QP ++ + + + N G R+ P R P P
Sbjct: 166 MGNQPPGGV-PGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPP-RGMGPMGPG-------P 216
Query: 75 GSPEEGVRSPPE--GAEIPGAEPEKMG-GAGTVCSPLEDNGYASSSLSIDSRSSSPEPAC 131
+ G+R PP G +PG MG GAG P + +S+ SI SSSP
Sbjct: 217 QNYGSGMRPPPNSLGPAMPGIN---MGPGAGR---PWPN---PNSANSIPYSSSSPGTYV 267
Query: 132 GTPRGPGPP-DPLLPSVAQA 150
G P G GPP P++PS A +
Sbjct: 268 GPPGGGGPPGTPIMPSPADS 287
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 35.4 bits (80), Expect = 0.041
Identities = 35/134 (26%), Positives = 46/134 (34%), Gaps = 20/134 (14%)
Query: 10 EGGQFLGDPPPGLCQPELQPDSNSNFMASAKDANENWHGMPGRVEPILRRSSSESPSDNQ 69
+GG PPP +PE P N G P R P NQ
Sbjct: 84 QGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPP----GKPERPPP---------QGGNQ 130
Query: 70 AFQAPGSPEEGVRSPPEG---AEIPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDSRSSS 126
+ + P P + R PP+G ++ P P K G P E N S+
Sbjct: 131 SHRPPPPPGKPERPPPQGGNQSQGPPPHPGKPEGP----PPQEGNKSRSARSPPGKPQGP 186
Query: 127 PEPACGTPRGPGPP 140
P+ P+GP PP
Sbjct: 187 PQQEGNKPQGPPPP 200
Score = 31.2 bits (69), Expect = 0.77
Identities = 35/132 (26%), Positives = 43/132 (32%), Gaps = 25/132 (18%)
Query: 10 EGGQFLGDPPPGLCQPELQPDSNSNFMASAKDANENWHGMPGRVEPILRRSSSESPSDNQ 69
+GG PPP +PE +P N G P R P S +P
Sbjct: 63 QGGNQSQGPPPPPGKPEGRPPQGGN----QSQGPPPHPGKPERPPPQGGNQSQGTPPP-- 116
Query: 70 AFQAPGSPEEGVRSPPEGAEIPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDSRSSSPEP 129
PG PE R PP+G P G P G ++S P P
Sbjct: 117 ----PGKPE---RPPPQGGNQSHRPPPPPGKPER---PPPQGG---------NQSQGPPP 157
Query: 130 ACGTPRGPGPPD 141
G P GP P +
Sbjct: 158 HPGKPEGPPPQE 169
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 35.0 bits (79), Expect = 0.053
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 26/120 (21%)
Query: 48 GMPGRVEPILRRSSSESPSDNQAFQAPGSPEEGVRSPPEGAEIPGAEPEKMGGAGTVCSP 107
G+PG + P+L P N PG P+ P GA + G
Sbjct: 3055 GLPG-LPPVLL------PGMNGPSSLPGFPQNSNTLTPPGAGMLGFPTS----------- 3096
Query: 108 LEDNGYASSSLSIDSRSSSPEPACGTPRGPGPPDPLLPSVAQAVQHLQVQERYKEQEKEK 167
A+SS ++ S+ +P TP P PP P PS + + Q Q +++ KE EK++
Sbjct: 3097 ------ATSSPALSLSSAPTKPLLQTPPPPPPPPPPPPSSSLSGQ--QTEQQNKESEKKQ 3148
>gi|102467235 inner centromere protein antigens 135/155kDa isoform 1
[Homo sapiens]
Length = 918
Score = 34.7 bits (78), Expect = 0.070
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Query: 82 RSPPEGAE-IPGAEPEKMGGAGTVCSPLEDNGYASSSLSIDSRSSSPE-PACG-----TP 134
+ PPE AE + AEPE G P D A+S+ + +SSPE P+ G T
Sbjct: 376 KEPPEEAEPVAAAEPEVPENNGNNSWPHNDTEIANSTPNPKPAASSPETPSAGQQEAKTD 435
Query: 135 RGPGPPDP-----LLPSVAQAVQHLQVQERYKEQE 164
+ GP +P S QAV L ++ +++E
Sbjct: 436 QADGPREPPQSARRKRSYKQAVSELDEEQHLEDEE 470
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.131 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,557,794
Number of Sequences: 37866
Number of extensions: 748038
Number of successful extensions: 4566
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 420
Number of HSP's that attempted gapping in prelim test: 4050
Number of HSP's gapped (non-prelim): 957
length of query: 229
length of database: 18,247,518
effective HSP length: 99
effective length of query: 130
effective length of database: 14,498,784
effective search space: 1884841920
effective search space used: 1884841920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.