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Search of human proteins with 227430410
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|227430410 POU class 5 homeobox 1B [Homo sapiens]
(359 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|227430410 POU class 5 homeobox 1B [Homo sapiens] 753 0.0
gi|42560248 POU domain, class 5, transcription factor 1 isoform ... 716 0.0
gi|116235491 POU domain, class 5, transcription factor 1 isoform... 439 e-123
gi|23463326 POU domain class 5, transcription factor 2 [Homo sap... 256 2e-68
gi|110624765 POU domain, class 3, transcription factor 1 [Homo s... 197 2e-50
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 183 2e-46
gi|110624763 POU domain, class 3, transcription factor 4 [Homo s... 182 3e-46
gi|51702521 POU domain, class 3, transcription factor 2 [Homo sa... 182 4e-46
gi|42476164 POU class 2 homeobox 1 [Homo sapiens] 165 5e-41
gi|4505959 POU domain, class 2, transcription factor 2 [Homo sap... 165 5e-41
gi|148664218 POU transcription factor [Homo sapiens] 162 4e-40
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 134 2e-31
gi|170650730 pituitary specific transcription factor 1 isoform b... 132 6e-31
gi|4505955 pituitary specific transcription factor 1 isoform alp... 132 6e-31
gi|110347455 Brn3b POU domain transcription factor [Homo sapiens] 124 1e-28
gi|4505965 POU class 4 homeobox 3 [Homo sapiens] 120 1e-27
gi|223890225 POU class 6 homeobox 1 [Homo sapiens] 108 7e-24
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 83 4e-16
gi|30410785 LIM homeobox protein 1 [Homo sapiens] 48 1e-05
gi|11641283 LIM homeobox protein 5 [Homo sapiens] 47 2e-05
gi|210147470 NK2 transcription factor related, locus 6 [Homo sap... 47 3e-05
gi|24497589 aristaless related homeobox [Homo sapiens] 46 5e-05
gi|15375314 LIM homeobox protein 4 [Homo sapiens] 46 6e-05
gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens] 45 8e-05
gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens] 45 8e-05
gi|61969666 arginine-fifty homeobox [Homo sapiens] 44 2e-04
gi|11386181 H2.0-like homeobox [Homo sapiens] 43 4e-04
gi|33457350 OTU domain containing 5 isoform a [Homo sapiens] 43 5e-04
gi|209977021 OTU domain containing 5 isoform b [Homo sapiens] 43 5e-04
gi|209977019 OTU domain containing 5 isoform b [Homo sapiens] 43 5e-04
>gi|227430410 POU class 5 homeobox 1B [Homo sapiens]
Length = 359
Score = 753 bits (1944), Expect = 0.0
Identities = 359/359 (100%), Positives = 359/359 (100%)
Query: 1 MAGHLASDFAFSPPPGGGGDGPWGAEPGWVDPLTWLSFQGPPGGPGIGPGVGPGSEVWGI 60
MAGHLASDFAFSPPPGGGGDGPWGAEPGWVDPLTWLSFQGPPGGPGIGPGVGPGSEVWGI
Sbjct: 1 MAGHLASDFAFSPPPGGGGDGPWGAEPGWVDPLTWLSFQGPPGGPGIGPGVGPGSEVWGI 60
Query: 61 PPCPPPYELCGGMAYCGPQVGVGLVPQGGLETSQPESEAGVGVESNSNGASPEPCTVPPG 120
PPCPPPYELCGGMAYCGPQVGVGLVPQGGLETSQPESEAGVGVESNSNGASPEPCTVPPG
Sbjct: 61 PPCPPPYELCGGMAYCGPQVGVGLVPQGGLETSQPESEAGVGVESNSNGASPEPCTVPPG 120
Query: 121 AVKLEKEKLEQNPEKSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFS 180
AVKLEKEKLEQNPEKSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFS
Sbjct: 121 AVKLEKEKLEQNPEKSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFS 180
Query: 181 QKTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLMQARKRKRTSIENR 240
QKTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLMQARKRKRTSIENR
Sbjct: 181 QKTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLMQARKRKRTSIENR 240
Query: 241 VRGNLENLFLQCPKPTLQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAA 300
VRGNLENLFLQCPKPTLQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAA
Sbjct: 241 VRGNLENLFLQCPKPTLQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAA 300
Query: 301 GSPFSGGPVSFPPAPGPHFGTPGYGSPHFTALYSSVPFPEGEVFPPVSVITLGSPMHSN 359
GSPFSGGPVSFPPAPGPHFGTPGYGSPHFTALYSSVPFPEGEVFPPVSVITLGSPMHSN
Sbjct: 301 GSPFSGGPVSFPPAPGPHFGTPGYGSPHFTALYSSVPFPEGEVFPPVSVITLGSPMHSN 359
>gi|42560248 POU domain, class 5, transcription factor 1 isoform 1
[Homo sapiens]
Length = 360
Score = 716 bits (1849), Expect = 0.0
Identities = 345/360 (95%), Positives = 348/360 (96%), Gaps = 1/360 (0%)
Query: 1 MAGHLASDFAFSPPPGGGGDGPWGAEPGWVDPLTWLSFQGPPGGPGIGPGVGPGSEVWGI 60
MAGHLASDFAFSPPPGGGGDGP G EPGWVDP TWLSFQGPPGGPGIGPGVGPGSEVWGI
Sbjct: 1 MAGHLASDFAFSPPPGGGGDGPGGPEPGWVDPRTWLSFQGPPGGPGIGPGVGPGSEVWGI 60
Query: 61 PPCPPPYELCGGMAYCGPQVGVGLVPQGGLETSQPESEAGVGVESNSNGASPEPCTVPPG 120
PPCPPPYE CGGMAYCGPQVGVGLVPQGGLETSQPE EAGVGVESNS+GASPEPCTV PG
Sbjct: 61 PPCPPPYEFCGGMAYCGPQVGVGLVPQGGLETSQPEGEAGVGVESNSDGASPEPCTVTPG 120
Query: 121 AVKLEKEKLEQNPEKSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFS 180
AVKLEKEKLEQNPE+SQDIKALQKELEQFAKLLKQKRITLGYTQADVGL LGVLFGKVFS
Sbjct: 121 AVKLEKEKLEQNPEESQDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFS 180
Query: 181 QKTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLMQARKRKRTSIENR 240
Q TICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETL+QARKRKRTSIENR
Sbjct: 181 QTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENR 240
Query: 241 VRGNLENLFLQCPKPTL-QISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEA 299
VRGNLENLFLQCPKPTL QISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEA
Sbjct: 241 VRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEA 300
Query: 300 AGSPFSGGPVSFPPAPGPHFGTPGYGSPHFTALYSSVPFPEGEVFPPVSVITLGSPMHSN 359
AGSPFSGGPVSFP APGPHFGTPGYGSPHFTALYSSVPFPEGE FPPVSV TLGSPMHSN
Sbjct: 301 AGSPFSGGPVSFPLAPGPHFGTPGYGSPHFTALYSSVPFPEGEAFPPVSVTTLGSPMHSN 360
>gi|116235491 POU domain, class 5, transcription factor 1 isoform 2
[Homo sapiens]
Length = 265
Score = 439 bits (1129), Expect = e-123
Identities = 218/226 (96%), Positives = 220/226 (97%), Gaps = 1/226 (0%)
Query: 135 KSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFSQKTICRFEALQLSF 194
+SQDIKALQKELEQFAKLLKQKRITLGYTQADVGL LGVLFGKVFSQ TICRFEALQLSF
Sbjct: 40 QSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSF 99
Query: 195 KNMCKLRPLLQKWVEEADNNENLQEICKAETLMQARKRKRTSIENRVRGNLENLFLQCPK 254
KNMCKLRPLLQKWVEEADNNENLQEICKAETL+QARKRKRTSIENRVRGNLENLFLQCPK
Sbjct: 100 KNMCKLRPLLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPK 159
Query: 255 PTL-QISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFPP 313
PTL QISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFP
Sbjct: 160 PTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFPL 219
Query: 314 APGPHFGTPGYGSPHFTALYSSVPFPEGEVFPPVSVITLGSPMHSN 359
APGPHFGTPGYGSPHFTALYSSVPFPEGE FPPVSV TLGSPMHSN
Sbjct: 220 APGPHFGTPGYGSPHFTALYSSVPFPEGEAFPPVSVTTLGSPMHSN 265
>gi|23463326 POU domain class 5, transcription factor 2 [Homo
sapiens]
Length = 328
Score = 256 bits (654), Expect = 2e-68
Identities = 161/342 (47%), Positives = 196/342 (57%), Gaps = 38/342 (11%)
Query: 1 MAGHLASDFAFSPPPGGGGDGPWGAEPGWVDPLTWLSFQGPPGG----PGIGPGVGPGSE 56
MAGH S+ F P PG GG GP G P VD LTWLS Q PG P + PG+ PG +
Sbjct: 1 MAGHRPSNH-FCPLPGSGGGGPRGPMPLRVDTLTWLSTQAAPGRVMVWPAVRPGICPGPD 59
Query: 57 VWGIPPCPPPYELCGGMAYCGPQVGVGLVPQGGLETSQPESEAGVGVESNSNGASPEPCT 116
VW IP P P+E G +A C P++G SEAG + S GA P P
Sbjct: 60 VWRIPLGPLPHEFRGWIAPCRPRLGA--------------SEAGDWLRRPSEGALPGPYI 105
Query: 117 VPPGAVKLEKEKLEQNPEKSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLILGVLFG 176
KL +DI + KEL+Q AK L+QKR++LGY+QADVG+ +G LFG
Sbjct: 106 ALRSIPKLPPP---------EDISGILKELQQLAKELRQKRLSLGYSQADVGIAVGALFG 156
Query: 177 KVFSQKTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAE-TLMQARKRKRT 235
KV SQ TICRFEA QLS NM KLRPLL+KW++E + ENL +CK E L Q+ K +R
Sbjct: 157 KVLSQTTICRFEAQQLSVANMWKLRPLLKKWLKEVE-AENLLGLCKMEMILQQSGKWRRA 215
Query: 236 SIENRVRGNLENLFLQCPKPT-LQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQR 294
S E R+ +LE F +CPKPT QISHIA L L+KDVVRVWF NR + G R ++D + R
Sbjct: 216 SRERRIGNSLEKFFQRCPKPTPQQISHIAGCLQLQKDVVRVWFYNRSKMGSRPTNDASPR 275
Query: 295 EDFEAAGSPFSGGPVSFPPAPGPHFGTP-GYGSPHFTALYSS 335
E AG P G PV F H G PH+T LYS+
Sbjct: 276 EIVGTAGPPCPGAPVCF------HLGLGLPVDIPHYTRLYSA 311
>gi|110624765 POU domain, class 3, transcription factor 1 [Homo
sapiens]
Length = 451
Score = 197 bits (500), Expect = 2e-50
Identities = 136/323 (42%), Positives = 168/323 (52%), Gaps = 60/323 (18%)
Query: 9 FAFSPPPGGGGDGPWGAEPGWVDPLTWLSFQGPPGGPGIGPGVGPGSEVWGIPPCPPPYE 68
+A + PGGGG G G L+ G GPG+ + + P PPP+
Sbjct: 159 YAQAAYPGGGGGGLAGM----------LAAGGGGAGPGLHHALHEDGHEAQLEPSPPPHL 208
Query: 69 LCGGMAYCGPQVGVGLVPQGGLETSQPESEAGVGVESNSNGASPEPCTVPPGAVKLEKEK 128
G A+ G GGL + G G +S G
Sbjct: 209 GAHGHAH-------GHAHAGGLHAAAAHLHPGAGGGGSSVG------------------- 242
Query: 129 LEQNPEKSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFSQKTICRFE 188
E S + +LEQFAK KQ+RI LG+TQADVGL LG L+G VFSQ TICRFE
Sbjct: 243 -----EHSDEDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFE 297
Query: 189 ALQLSFKNMCKLRPLLQKWVEEADNNE----NLQEICKAETLMQARKR-KRTSIENRVRG 243
ALQLSFKNMCKL+PLL KW+EE D++ NL +I Q RKR KRTSIE V+G
Sbjct: 298 ALQLSFKNMCKLKPLLNKWLEETDSSSGSPTNLDKIA-----AQGRKRKKRTSIEVGVKG 352
Query: 244 NLENLFLQCPKPTL-QISHIAQQLGLEKDVVRVWFCNRRQKGKR----SSSDYAQREDFE 298
LE+ FL+CPKP+ +I+ +A L LEK+VVRVWFCNRRQK KR + + + +D
Sbjct: 353 ALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAAGAGHPPMDDVY 412
Query: 299 AAGSPFSGG----PVSFPPAPGP 317
A G GG P S PP P P
Sbjct: 413 APGELGPGGGGASPPSAPPPPPP 435
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 183 bits (465), Expect = 2e-46
Identities = 100/190 (52%), Positives = 125/190 (65%), Gaps = 5/190 (2%)
Query: 132 NPEKSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFSQKTICRFEALQ 191
+P +D +LEQFAK KQ+RI LG+TQADVGL LG L+G VFSQ TICRFEALQ
Sbjct: 309 DPHSDEDTPT-SDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 367
Query: 192 LSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLMQARKRKRTSIENRVRGNLENLFLQ 251
LSFKNMCKL+PLL KW+EEAD++ +++KRTSIE V+G LE+ FL+
Sbjct: 368 LSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLK 427
Query: 252 CPKPTLQ-ISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVS 310
CPKP+ Q I+++A L LEK+VVRVWFCNRRQK KR + Q++ + S
Sbjct: 428 CPKPSAQEITNLADSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQQTPDDVYSQVGTVSAD 487
Query: 311 FPPAPGPHFG 320
PP PH G
Sbjct: 488 TPP---PHHG 494
>gi|110624763 POU domain, class 3, transcription factor 4 [Homo
sapiens]
Length = 361
Score = 182 bits (463), Expect = 3e-46
Identities = 113/234 (48%), Positives = 133/234 (56%), Gaps = 17/234 (7%)
Query: 58 WGIPPCPPPYELCGGM---AYCGPQVGV-GLVPQGGLETSQPESEAGVGVESNSNGASPE 113
WG P P P G Y P V G++ GGL T P A +S
Sbjct: 114 WGASPAPNPSITSSGQPLNVYSQPGFTVSGMLEHGGL-TPPP---AAASAQSLHPVLREP 169
Query: 114 PCTVPPGAVKLEKEKLEQNPEKSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLILGV 173
P G+ + E+ P ELEQFAK KQ+RI LG+TQADVGL LG
Sbjct: 170 PDHGELGSHHCQDHSDEETPTSD--------ELEQFAKQFKQRRIKLGFTQADVGLALGT 221
Query: 174 LFGKVFSQKTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLMQARKRK 233
L+G VFSQ TICRFE LQLSFKNMCKL+PLL KW+EEAD++ +++K
Sbjct: 222 LYGNVFSQTTICRFEGLQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKK 281
Query: 234 RTSIENRVRGNLENLFLQCPKPTLQ-ISHIAQQLGLEKDVVRVWFCNRRQKGKR 286
RTSIE V+G LE FL+CPKP Q IS +A L LEK+VVRVWFCNRRQK KR
Sbjct: 282 RTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKR 335
>gi|51702521 POU domain, class 3, transcription factor 2 [Homo
sapiens]
Length = 443
Score = 182 bits (462), Expect = 4e-46
Identities = 112/250 (44%), Positives = 137/250 (54%), Gaps = 13/250 (5%)
Query: 49 PGVGPGSEVWGIPPCPPPYELC-GGMAYCGPQ------VGVGLVPQG----GLETSQPES 97
PG G PP GG+ Y P +G G P G GL + E
Sbjct: 163 PGPGAWRSAAAAAHLPPSMGASNGGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEP 222
Query: 98 EAGVGVESNSNGASPEPCTVPPGAVKLEKEKLEQNPEKSQDIKALQKELEQFAKLLKQKR 157
+ +P PP +P +D +LEQFAK KQ+R
Sbjct: 223 HHADHHPHPHSHPHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPT-SDDLEQFAKQFKQRR 281
Query: 158 ITLGYTQADVGLILGVLFGKVFSQKTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENL 217
I LG+TQADVGL LG L+G VFSQ TICRFEALQLSFKNMCKL+PLL KW+EEAD++
Sbjct: 282 IKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSGS 341
Query: 218 QEICKAETLMQARKRKRTSIENRVRGNLENLFLQCPKPTLQ-ISHIAQQLGLEKDVVRVW 276
+++KRTSIE V+G LE+ FL+CPKP+ Q I+ +A L LEK+VVRVW
Sbjct: 342 PTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVW 401
Query: 277 FCNRRQKGKR 286
FCNRRQK KR
Sbjct: 402 FCNRRQKEKR 411
>gi|42476164 POU class 2 homeobox 1 [Homo sapiens]
Length = 743
Score = 165 bits (418), Expect = 5e-41
Identities = 107/251 (42%), Positives = 140/251 (55%), Gaps = 29/251 (11%)
Query: 78 PQVGVGLVPQGGLETSQPE-SEAGVGVESNSNGASPEPCTVPP--GAVKLEKEKLEQNPE 134
PQ GL+ L T P+ S+A + S + +P T A ++ Q+
Sbjct: 212 PQGQQGLLQAQNLLTQLPQQSQANLLQSQPSITLTSQPATPTRTIAATPIQTLPQSQSTP 271
Query: 135 KSQDIKALQK-----ELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFSQKTICRFEA 189
K D +L++ ELEQFAK KQ+RI LG+TQ DVGL +G L+G FSQ TI RFEA
Sbjct: 272 KRIDTPSLEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA 331
Query: 190 LQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETL-------MQARKRKRTSIENRVR 242
L LSFKNMCKL+PLL+KW+ +A+N + + L + R++KRTSIE +R
Sbjct: 332 LNLSFKNMCKLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIR 391
Query: 243 GNLENLFLQCPKPTL-QISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAG 301
LE FL+ KPT +I+ IA QL +EK+V+RVWFCNRRQK KR
Sbjct: 392 VALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKR-------------IN 438
Query: 302 SPFSGGPVSFP 312
P SGG S P
Sbjct: 439 PPSSGGTSSSP 449
>gi|4505959 POU domain, class 2, transcription factor 2 [Homo
sapiens]
Length = 463
Score = 165 bits (418), Expect = 5e-41
Identities = 116/279 (41%), Positives = 148/279 (53%), Gaps = 52/279 (18%)
Query: 87 QGGLETSQPESEAGVGVESNSNGASPEPCTVPPGAVKLEKEKLEQNPEKSQDIKALQKEL 146
QG L TSQP AG+ + P C PP +PE+ D++ EL
Sbjct: 152 QGALLTSQPR--AGLPTQ-------PPKCLEPPS-----------HPEEPSDLE----EL 187
Query: 147 EQFAKLLKQKRITLGYTQADVGLILGVLFGKVFSQKTICRFEALQLSFKNMCKLRPLLQK 206
EQFA+ KQ+RI LG+TQ DVGL +G L+G FSQ TI RFEAL LSFKNMCKL+PLL+K
Sbjct: 188 EQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEK 247
Query: 207 WVEEADN----------NENLQEICKAETLMQARKRKRTSIENRVRGNLENLFLQCPKPT 256
W+ +A+ N+ + L R++KRTSIE VR LE FL KPT
Sbjct: 248 WLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFALEKSFLANQKPT 307
Query: 257 L-QISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFPPAP 315
+I IA+QL +EK+V+RVWFCNRRQK KR + A A P G P S+
Sbjct: 308 SEEILLIAEQLHMEKEVIRVWFCNRRQKEKRINPCSA------APMLPSPGKPASY---- 357
Query: 316 GPHFGTPGYGSPHFTALYSSVPFPEGEVFPPVSVITLGS 354
PH TP G+ ++P + +V TL S
Sbjct: 358 SPHMVTPQGGA-------GTLPLSQASSSLSTTVTTLSS 389
>gi|148664218 POU transcription factor [Homo sapiens]
Length = 436
Score = 162 bits (410), Expect = 4e-40
Identities = 116/308 (37%), Positives = 157/308 (50%), Gaps = 43/308 (13%)
Query: 27 PGWVDPLT-WLSFQGPPGGPGIGPGVGPGSEVWGIPPCPPPYELCGGMAYCGPQVGVGLV 85
PG + ++ +L Q PG G+ P + P P + G + PQ G GL
Sbjct: 101 PGHLQSVSQFLLSQTQPGQQGLQPNL-----------LPFPQQQSGLLL---PQTGPGLA 146
Query: 86 PQGGLETSQPESEAGVGVESNSNGASPEPCTVPPGAVKLEKEKLEQNPEKSQDIKALQKE 145
Q P S +E++ + P P +P E LE E
Sbjct: 147 SQAFGHPGLPGSSLEPHLEASQH--LPVPKHLPSSGGADEPSDLE--------------E 190
Query: 146 LEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFSQKTICRFEALQLSFKNMCKLRPLLQ 205
LE+FAK KQ+RI LG+TQ DVGL +G L+G FSQ TI RFEAL LSFKNMCKL+PLL+
Sbjct: 191 LEKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLE 250
Query: 206 KWVEEADNNENLQEICKAET------LMQARKRKRTSIENRVRGNLENLFLQCPKPTL-Q 258
KW+ +A+++ + + + + +++KRTSIE +R LE F PKP+ +
Sbjct: 251 KWLNDAESSPSDPSVSTPSSYPSLSEVFGRKRKKRTSIETNIRLTLEKRFQDNPKPSSEE 310
Query: 259 ISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQR-----EDFEAAGSPFSGGPVSFPP 313
IS IA+QL +EK+VVRVWFCNRRQK KR + A + S GP+S PP
Sbjct: 311 ISMIAEQLSMEKEVVRVWFCNRRQKEKRINCPVATPIKPPVYNSRLVSPSGSLGPLSVPP 370
Query: 314 APGPHFGT 321
GT
Sbjct: 371 VHSTMPGT 378
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 134 bits (336), Expect = 2e-31
Identities = 110/301 (36%), Positives = 147/301 (48%), Gaps = 38/301 (12%)
Query: 2 AGHLASDFAFSPPPGGGGDGPWGAEPGWVDPLTWLSFQGPPGGPGIGPGVG---PGSEVW 58
AG A PGGGG G PG GP GG G GPG G PG +
Sbjct: 134 AGAAAGGGGAHDGPGGGGGPGGGGGPGG----------GPGGGGGGGPGGGGGGPGGGLL 183
Query: 59 GIPPCPPPY-ELCGGMAYCGPQVGVGL---VPQGGLETSQPESEAGVGVESNSNG--ASP 112
G P P+ G +++ + + +P GL + A + + G A+
Sbjct: 184 GGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAAA 243
Query: 113 EPCTVPPGAVKLEKEKLEQNPEKSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLILG 172
GA L D +ELE FA+ KQ+RI LG TQADVG L
Sbjct: 244 SAAAAVVGAAGLAS---------ICDSDTDPRELEAFAERFKQRRIKLGVTQADVGSALA 294
Query: 173 VLFGKV-----FSQKTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLM 227
L K+ SQ TICRFE+L LS NM L+P+LQ W+EEA+ + +++ K E
Sbjct: 295 NL--KIPGVGSLSQSTICRFESLTLSHNNMIALKPILQAWLEEAEGAQR-EKMNKPELFN 351
Query: 228 QA-RKRKRTSIENRVRGNLENLFLQCPKPTLQ-ISHIAQQLGLEKDVVRVWFCNRRQKGK 285
+KRKRTSI + +LE F P+P+ + I+ IA++L L+K+VVRVWFCN+RQK K
Sbjct: 352 GGEKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 411
Query: 286 R 286
R
Sbjct: 412 R 412
>gi|170650730 pituitary specific transcription factor 1 isoform beta
[Homo sapiens]
Length = 317
Score = 132 bits (331), Expect = 6e-31
Identities = 76/152 (50%), Positives = 97/152 (63%), Gaps = 5/152 (3%)
Query: 144 KELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFSQKTICRFEALQLSFKNMCKLRPL 203
+ELE+FA K +RI LGYTQ +VG L + G FSQ TICRFE LQLSFKN CKL+ +
Sbjct: 156 RELEKFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAI 215
Query: 204 LQKWVEEADNNENLQEICKAETLMQARKRK-RTSIENRVRGNLENLFLQCPKPTLQ-ISH 261
L KW+EEA E + + + RKRK RT+I + LE F + KP+ Q I
Sbjct: 216 LSKWLEEA---EQVGALYNEKVGANERKRKRRTTISIAAKDALERHFGEQNKPSSQEIMR 272
Query: 262 IAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQ 293
+A++L LEK+VVRVWFCNRRQ+ KR + Q
Sbjct: 273 MAEELNLEKEVVRVWFCNRRQREKRVKTSLNQ 304
>gi|4505955 pituitary specific transcription factor 1 isoform alpha
[Homo sapiens]
Length = 291
Score = 132 bits (331), Expect = 6e-31
Identities = 76/152 (50%), Positives = 97/152 (63%), Gaps = 5/152 (3%)
Query: 144 KELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFSQKTICRFEALQLSFKNMCKLRPL 203
+ELE+FA K +RI LGYTQ +VG L + G FSQ TICRFE LQLSFKN CKL+ +
Sbjct: 130 RELEKFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAI 189
Query: 204 LQKWVEEADNNENLQEICKAETLMQARKRK-RTSIENRVRGNLENLFLQCPKPTLQ-ISH 261
L KW+EEA E + + + RKRK RT+I + LE F + KP+ Q I
Sbjct: 190 LSKWLEEA---EQVGALYNEKVGANERKRKRRTTISIAAKDALERHFGEQNKPSSQEIMR 246
Query: 262 IAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQ 293
+A++L LEK+VVRVWFCNRRQ+ KR + Q
Sbjct: 247 MAEELNLEKEVVRVWFCNRRQREKRVKTSLNQ 278
>gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]
Length = 409
Score = 124 bits (311), Expect = 1e-28
Identities = 76/156 (48%), Positives = 103/156 (66%), Gaps = 10/156 (6%)
Query: 138 DIKALQKELEQFAKLLKQKRITLGYTQADVGLILGVLFGKV-----FSQKTICRFEALQL 192
D+ A ++LE FA+ KQ+RI LG TQADVG L L K+ SQ TICRFE+L L
Sbjct: 250 DVDADPRDLEAFAERFKQRRIKLGVTQADVGSALANL--KIPGVGSLSQSTICRFESLTL 307
Query: 193 SFKNMCKLRPLLQKWVEEADNNENLQEICKAETLMQA-RKRKRTSIENRVRGNLENLFLQ 251
S NM L+P+LQ W+EEA+ + +++ K E A +KRKRTSI + +LE F
Sbjct: 308 SHNNMIALKPILQAWLEEAEKSHR-EKLTKPELFNGAEKKRKRTSIAAPEKRSLEAYFAI 366
Query: 252 CPKPTLQ-ISHIAQQLGLEKDVVRVWFCNRRQKGKR 286
P+P+ + I+ IA++L L+K+VVRVWFCN+RQK KR
Sbjct: 367 QPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 402
>gi|4505965 POU class 4 homeobox 3 [Homo sapiens]
Length = 338
Score = 120 bits (302), Expect = 1e-27
Identities = 77/161 (47%), Positives = 102/161 (63%), Gaps = 10/161 (6%)
Query: 133 PEKSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLILGVLFGKV-----FSQKTICRF 187
P D+++ +ELE FA+ KQ+RI LG TQADVG L L K+ SQ TICRF
Sbjct: 174 PACLSDVESDPRELEAFAERFKQRRIKLGVTQADVGAALANL--KIPGVGSLSQSTICRF 231
Query: 188 EALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLM-QARKRKRTSIENRVRGNLE 246
E+L LS NM L+P+LQ W+EEA+ ++ K E RKRKRTSI + +LE
Sbjct: 232 ESLTLSHNNMIALKPVLQAWLEEAEAAYR-EKNSKPELFNGSERKRKRTSIAAPEKRSLE 290
Query: 247 NLFLQCPKPTLQ-ISHIAQQLGLEKDVVRVWFCNRRQKGKR 286
F P+P+ + I+ IA++L L+K+VVRVWFCN+RQK KR
Sbjct: 291 AYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 331
>gi|223890225 POU class 6 homeobox 1 [Homo sapiens]
Length = 301
Score = 108 bits (270), Expect = 7e-24
Identities = 73/210 (34%), Positives = 112/210 (53%), Gaps = 15/210 (7%)
Query: 85 VPQGGLETSQPESEAGVGVESNSNGASPEPCTVPPGAVKLEKEKLEQNPEKSQDIKALQK 144
VPQ + + P A + +++ P C+ P +L + P +D L+
Sbjct: 93 VPQPAVVIASPAPAA----KPSASAPIPITCSETPTVSQLVSKP--HTPSLDEDGINLE- 145
Query: 145 ELEQFAKLLKQKRITLGYTQADVGLILGVLFGKVFSQKTICRFEALQLSFKNMCKLRPLL 204
E+ +FAK K +R++LG TQ VG L G +SQ ICRFE L ++ K+ KL+P+L
Sbjct: 146 EIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLKPVL 205
Query: 205 QKWVEEA-----DNNENLQEICKAETLMQARKRKRTSIENRVRGNLENLFLQCPKPTLQ- 258
+KW+ EA + +NL E E ++++RTS + L F + P PT Q
Sbjct: 206 EKWLNEAELRNQEGQQNLMEFVGGEP--SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQE 263
Query: 259 ISHIAQQLGLEKDVVRVWFCNRRQKGKRSS 288
I+ IA++L +++VVRVWFCNRRQ K +S
Sbjct: 264 ITEIAKELNYDREVVRVWFCNRRQTLKNTS 293
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 82.8 bits (203), Expect = 4e-16
Identities = 90/347 (25%), Positives = 144/347 (41%), Gaps = 68/347 (19%)
Query: 3 GHLASDFAFSPPPGGGGDGPWGAEPGWVDPLT---WLSFQGPPGGPGIGPGVGPGSEVWG 59
G + P PG G + V P+T + QG IG + P G
Sbjct: 341 GQIIGTIPLMPNPGPSSQAASGTQGLQVQPITPQLLTNAQGQIIATVIGNQILPVINTQG 400
Query: 60 IP--PCPPPYELCGGMAYCGPQVGVGLVPQGG----LETSQPE-SEAGVGVESNSNGASP 112
I P P +L + Q VG G L SQ S++ V S+S+ +S
Sbjct: 401 ITLSPIKPGQQL-----HQPSQTSVGQAASQGNLLHLAHSQASMSQSPVRQASSSSSSSS 455
Query: 113 EPCTVPPGAVKLEKEKLEQNPEKSQ-DIKALQ-KELEQFAKLLKQKRITLGYTQADVGLI 170
+ G +L NP+ + ++ + +E+ +FAK K +R++LG TQ VG
Sbjct: 456 SSSALSVG-------QLVSNPQTAAGEVDGVNLEEIREFAKAFKIRRLSLGLTQTQVGQA 508
Query: 171 LGVLFGKVFSQKTICR------------------------------------FEALQLSF 194
L G +SQ ICR FE L ++
Sbjct: 509 LSATEGPAYSQSAICRHTILRSHFFLPQEAQENTIASSLTAKLNPGLLYPARFEKLDITP 568
Query: 195 KNMCKLRPLLQKWVEEADNN-----ENLQEICKAETLMQARKRKRTSIENRVRGNLENLF 249
K+ K++P+L++W+ EA+ +NL E +E ++++RTS + L F
Sbjct: 569 KSAQKIKPVLERWMAEAEARHRAGMQNLTEFIGSEP--SKKRKRRTSFTPQALEILNAHF 626
Query: 250 LQCPKPTLQ-ISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQRE 295
+ P+ Q ++ IA++L +++VVRVWFCN+RQ K + Q E
Sbjct: 627 EKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKRQALKNTIKRLKQHE 673
>gi|30410785 LIM homeobox protein 1 [Homo sapiens]
Length = 406
Score = 48.1 bits (113), Expect = 1e-05
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 209 EEADNNENLQEICKAETLMQARKRKRTSIENRVRGNLENLFLQCPKPTLQI-SHIAQQLG 267
+EA +NEN + L R+ RT+I+ + L+ F PKPT I +AQ+ G
Sbjct: 164 KEAGSNEN-----DDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETG 218
Query: 268 LEKDVVRVWFCNRRQKGKR 286
L V++VWF NRR K +R
Sbjct: 219 LNMRVIQVWFQNRRSKERR 237
>gi|11641283 LIM homeobox protein 5 [Homo sapiens]
Length = 402
Score = 47.4 bits (111), Expect = 2e-05
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 209 EEADNNENLQEICKAETLMQARKRKRTSIENRVRGNLENLFLQCPKPTLQI-SHIAQQLG 267
+E NNEN ++ + R+ RT+I+ + L+ F PKPT I +AQ+ G
Sbjct: 164 KETANNENEEQNSGTK-----RRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETG 218
Query: 268 LEKDVVRVWFCNRRQKGKR 286
L V++VWF NRR K +R
Sbjct: 219 LNMRVIQVWFQNRRSKERR 237
>gi|210147470 NK2 transcription factor related, locus 6 [Homo
sapiens]
Length = 219
Score = 47.0 bits (110), Expect = 3e-05
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 19/96 (19%)
Query: 261 HIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAGSPFSGGPVSFP-------P 313
H+A L L V++WF NRR K KR D + E AG P + V+ P P
Sbjct: 82 HLASALQLTSTQVKIWFQNRRYKCKRQRQD----KSLELAGHPLTPRRVAVPVLVRDGKP 137
Query: 314 APGPHFGTPGYGSPHFTAL--------YSSVPFPEG 341
GP G P + SP+ A+ YS P+ G
Sbjct: 138 CLGPGPGAPAFPSPYSAAVSPYSCYGGYSGAPYGAG 173
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 46.2 bits (108), Expect = 5e-05
Identities = 77/321 (23%), Positives = 122/321 (38%), Gaps = 69/321 (21%)
Query: 60 IPPCPPPYELCGGMAYCGPQVGVGLVPQGGLETSQPESEAGVGVESNSNGASPEPCTVPP 119
+PP P EL G P+ +G+ G S P + G G E +
Sbjct: 183 VPPPPALDELGGPGGVTHPEERLGVAGGPG---SAPAAGGGTGTEDD------------- 226
Query: 120 GAVKLEKEKLEQNPEKSQDIKALQKELEQFAK-----LLKQKRITLGYTQADVGLILGVL 174
E+E LE ++ ++ + L+ + E+ + LLK+ R A G +
Sbjct: 227 -----EEELLEDEEDEDEEEELLEDDEEELLEDDARALLKEPRRC---PVAATGAVAAAA 278
Query: 175 FGKVFSQKTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKA------ETLMQ 228
V + E +LS K L P E+A+ + +C + E L++
Sbjct: 279 AAAVAT-------EGGELSPKEELLLHP------EDAEGKDGEDSVCLSAGSDSEEGLLK 325
Query: 229 ARKRK-RTSIENRVRGNLENLFLQCPKPTLQI-SHIAQQLGLEKDVVRVWFCNRRQKGKR 286
++R+ RT+ + LE F + P + +A +L L + V+VWF NRR K ++
Sbjct: 326 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRK 385
Query: 287 SSSDYAQREDFEAAGSPFSGGPVSFPPAPGPHFGTPGYGSPHFTAL-------------- 332
AQ G PF GP+S P+ + PH AL
Sbjct: 386 REKAGAQT---HPPGLPFP-GPLSATHPLSPYLDASPF-PPHHPALDSAWTAAAAAAAAA 440
Query: 333 YSSVPFPEGEVFPPVSVITLG 353
+ S+P P G P S LG
Sbjct: 441 FPSLPPPPGSASLPPSGAPLG 461
>gi|15375314 LIM homeobox protein 4 [Homo sapiens]
Length = 390
Score = 45.8 bits (107), Expect = 6e-05
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 231 KRKRTSIENRVRGNLENLFLQCPKPTLQI-SHIAQQLGLEKDVVRVWFCNRRQKGKRSSS 289
KR RT+I + L+N + PKP + ++ + GL+ VV+VWF NRR K KR
Sbjct: 158 KRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKK 217
Query: 290 D 290
D
Sbjct: 218 D 218
>gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens]
Length = 397
Score = 45.4 bits (106), Expect = 8e-05
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 215 ENLQEICKA--ETLMQAR-----KRKRTSIENRVRGNLENLFLQCPKPTLQI-SHIAQQL 266
E+ + +CKA ET Q KR RT+I + L++ + PKP + ++ +
Sbjct: 135 EDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSET 194
Query: 267 GLEKDVVRVWFCNRRQKGKRSSSD 290
GL+ VV+VWF NRR K KR D
Sbjct: 195 GLDMRVVQVWFQNRRAKEKRLKKD 218
>gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens]
Length = 402
Score = 45.4 bits (106), Expect = 8e-05
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 215 ENLQEICKA--ETLMQAR-----KRKRTSIENRVRGNLENLFLQCPKPTLQI-SHIAQQL 266
E+ + +CKA ET Q KR RT+I + L++ + PKP + ++ +
Sbjct: 140 EDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSET 199
Query: 267 GLEKDVVRVWFCNRRQKGKRSSSD 290
GL+ VV+VWF NRR K KR D
Sbjct: 200 GLDMRVVQVWFQNRRAKEKRLKKD 223
>gi|61969666 arginine-fifty homeobox [Homo sapiens]
Length = 315
Score = 44.3 bits (103), Expect = 2e-04
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 223 AETLMQARKRKRTSIENRVRGNLENLFLQCPKPTLQISH-IAQQLGLEKDVVRVWFCNRR 281
A T ++ R ++RTS ++ LE LF Q P + +A +L L + V+VWF NRR
Sbjct: 71 ATTAIRRRHKERTSFTHQQYEELEALFSQTMFPDRNLQEKLALRLDLPESTVKVWFRNRR 130
Query: 282 QKGKRSSSDYAQREDFEAAGSPFSGGPVSFPPAPGPHFGTPGYGSPHFTALYSSVP 337
K K+ + ++ + S P S +P P+ SP + YSS+P
Sbjct: 131 FKLKKQQQQQSAKQRNQILPSK-KNVPTSPRTSPSPY-----AFSPVISDFYSSLP 180
>gi|11386181 H2.0-like homeobox [Homo sapiens]
Length = 488
Score = 43.1 bits (100), Expect = 4e-04
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 224 ETLMQARKRKRT----SIENRVRGNLENLF-LQCPKPTLQISHIAQQLGLEKDVVRVWFC 278
+T+ Q KRKR+ N R LE F +Q +A LGL V+VWF
Sbjct: 266 DTMPQTYKRKRSWSRAVFSNLQRKGLEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQ 325
Query: 279 NRRQKGKRSSSDYAQREDFEAAGSPFSGG 307
NRR K + S AQ++ + AG SGG
Sbjct: 326 NRRMKWRHSKEAQAQKDKDKEAGEKPSGG 354
>gi|33457350 OTU domain containing 5 isoform a [Homo sapiens]
Length = 571
Score = 42.7 bits (99), Expect = 5e-04
Identities = 43/158 (27%), Positives = 61/158 (38%), Gaps = 22/158 (13%)
Query: 12 SPPPGGGGDGPWGAEPGWVDPLTWLSFQGP------------PGGPGIGPGVGPGSEVWG 59
SPPP G GP GA W + + GP PGGPG GPG G+ G
Sbjct: 64 SPPPQGPLPGPPGALHRWALAVPPGAVAGPRPQQASPPPCGGPGGPGGGPGDALGAAAAG 123
Query: 60 IPPCPPPYELCGGMAYCGPQVGVGLVPQGGLETSQPESEAGVGVESNSNGASPEPCTVPP 119
+ G + G VGVG G + + GVG G SPE V
Sbjct: 124 V-------GAAGVVVGVGGAVGVGGCCSGPGHSKRRRQAPGVGA---VGGGSPEREEVGA 173
Query: 120 GAVKLEKEKLEQNPEKSQDIKALQKELEQFAKLLKQKR 157
G ++ + ++ D ++++ F K L+ K+
Sbjct: 174 GYNSEDEYEAAAARIEAMDPATVEQQEHWFEKALRDKK 211
>gi|209977021 OTU domain containing 5 isoform b [Homo sapiens]
Length = 566
Score = 42.7 bits (99), Expect = 5e-04
Identities = 43/158 (27%), Positives = 61/158 (38%), Gaps = 22/158 (13%)
Query: 12 SPPPGGGGDGPWGAEPGWVDPLTWLSFQGP------------PGGPGIGPGVGPGSEVWG 59
SPPP G GP GA W + + GP PGGPG GPG G+ G
Sbjct: 64 SPPPQGPLPGPPGALHRWALAVPPGAVAGPRPQQASPPPCGGPGGPGGGPGDALGAAAAG 123
Query: 60 IPPCPPPYELCGGMAYCGPQVGVGLVPQGGLETSQPESEAGVGVESNSNGASPEPCTVPP 119
+ G + G VGVG G + + GVG G SPE V
Sbjct: 124 V-------GAAGVVVGVGGAVGVGGCCSGPGHSKRRRQAPGVGA---VGGGSPEREEVGA 173
Query: 120 GAVKLEKEKLEQNPEKSQDIKALQKELEQFAKLLKQKR 157
G ++ + ++ D ++++ F K L+ K+
Sbjct: 174 GYNSEDEYEAAAARIEAMDPATVEQQEHWFEKALRDKK 211
>gi|209977019 OTU domain containing 5 isoform b [Homo sapiens]
Length = 566
Score = 42.7 bits (99), Expect = 5e-04
Identities = 43/158 (27%), Positives = 61/158 (38%), Gaps = 22/158 (13%)
Query: 12 SPPPGGGGDGPWGAEPGWVDPLTWLSFQGP------------PGGPGIGPGVGPGSEVWG 59
SPPP G GP GA W + + GP PGGPG GPG G+ G
Sbjct: 64 SPPPQGPLPGPPGALHRWALAVPPGAVAGPRPQQASPPPCGGPGGPGGGPGDALGAAAAG 123
Query: 60 IPPCPPPYELCGGMAYCGPQVGVGLVPQGGLETSQPESEAGVGVESNSNGASPEPCTVPP 119
+ G + G VGVG G + + GVG G SPE V
Sbjct: 124 V-------GAAGVVVGVGGAVGVGGCCSGPGHSKRRRQAPGVGA---VGGGSPEREEVGA 173
Query: 120 GAVKLEKEKLEQNPEKSQDIKALQKELEQFAKLLKQKR 157
G ++ + ++ D ++++ F K L+ K+
Sbjct: 174 GYNSEDEYEAAAARIEAMDPATVEQQEHWFEKALRDKK 211
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.137 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,939,394
Number of Sequences: 37866
Number of extensions: 1358646
Number of successful extensions: 6938
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 417
Number of HSP's that attempted gapping in prelim test: 5390
Number of HSP's gapped (non-prelim): 1765
length of query: 359
length of database: 18,247,518
effective HSP length: 103
effective length of query: 256
effective length of database: 14,347,320
effective search space: 3672913920
effective search space used: 3672913920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.