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Search of human proteins with 226442852
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226442852 small nuclear ribonucleoprotein G-like protein
[Homo sapiens]
(74 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226442852 small nuclear ribonucleoprotein G-like protein [Hom... 150 2e-37
gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like p... 150 2e-37
gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like p... 150 2e-37
gi|4507133 small nuclear ribonucleoprotein polypeptide G [Homo s... 141 1e-34
gi|169194552 PREDICTED: similar to small nuclear ribonucleoprote... 110 2e-25
gi|169203121 PREDICTED: similar to small nuclear ribonucleoprote... 96 6e-21
gi|169203577 PREDICTED: similar to small nuclear ribonucleoprote... 96 6e-21
gi|169202369 PREDICTED: similar to small nuclear ribonucleoprote... 96 6e-21
gi|7706423 U6 snRNA-associated Sm-like protein LSm7 [Homo sapiens] 54 2e-08
gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo s... 39 0.001
gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens] 38 0.002
gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens] 38 0.002
gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo ... 38 0.002
gi|7657313 Lsm1 protein [Homo sapiens] 38 0.002
gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens] 38 0.002
gi|5901998 Sm protein F [Homo sapiens] 37 0.003
gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform... 34 0.029
gi|213385305 LSM5 homolog, U6 small nuclear RNA associated isofo... 33 0.065
gi|195222722 LSM5 homolog, U6 small nuclear RNA associated isofo... 33 0.065
gi|7657315 Lsm3 protein [Homo sapiens] 32 0.11
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 31 0.25
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 31 0.25
gi|157364947 ecotropic viral integration site 1 isoform a [Homo ... 30 0.55
gi|157364945 ecotropic viral integration site 1 isoform b [Homo ... 30 0.55
gi|157364943 ecotropic viral integration site 1 isoform b [Homo ... 30 0.55
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 29 0.94
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 29 0.94
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 29 0.94
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 29 0.94
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 29 0.94
>gi|226442852 small nuclear ribonucleoprotein G-like protein [Homo
sapiens]
Length = 74
Score = 150 bits (380), Expect = 2e-37
Identities = 74/74 (100%), Positives = 74/74 (100%)
Query: 1 MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV 60
MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV
Sbjct: 1 MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV 60
Query: 61 EIRGNSIIMLEALE 74
EIRGNSIIMLEALE
Sbjct: 61 EIRGNSIIMLEALE 74
>gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like
protein [Homo sapiens]
Length = 74
Score = 150 bits (380), Expect = 2e-37
Identities = 74/74 (100%), Positives = 74/74 (100%)
Query: 1 MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV 60
MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV
Sbjct: 1 MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV 60
Query: 61 EIRGNSIIMLEALE 74
EIRGNSIIMLEALE
Sbjct: 61 EIRGNSIIMLEALE 74
>gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like
protein [Homo sapiens]
Length = 74
Score = 150 bits (380), Expect = 2e-37
Identities = 74/74 (100%), Positives = 74/74 (100%)
Query: 1 MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV 60
MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV
Sbjct: 1 MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV 60
Query: 61 EIRGNSIIMLEALE 74
EIRGNSIIMLEALE
Sbjct: 61 EIRGNSIIMLEALE 74
>gi|4507133 small nuclear ribonucleoprotein polypeptide G [Homo
sapiens]
Length = 76
Score = 141 bits (356), Expect = 1e-34
Identities = 70/74 (94%), Positives = 70/74 (94%)
Query: 1 MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV 60
MSKAHPPELKKF DKK SLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ NIGMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 61 EIRGNSIIMLEALE 74
IRGNSIIMLEALE
Sbjct: 61 VIRGNSIIMLEALE 74
>gi|169194552 PREDICTED: similar to small nuclear
ribonucleoprotein polypeptide G [Homo sapiens]
Length = 62
Score = 110 bits (275), Expect = 2e-25
Identities = 54/61 (88%), Positives = 56/61 (91%)
Query: 14 DKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMVEIRGNSIIMLEAL 73
DKK SLKLNGGRHVQGIL+G DPFMNLVIDECVEMATSGQQ N GMV IRGNSI+MLEAL
Sbjct: 2 DKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNNTGMVVIRGNSILMLEAL 61
Query: 74 E 74
E
Sbjct: 62 E 62
>gi|169203121 PREDICTED: similar to small nuclear
ribonucleoprotein polypeptide G [Homo sapiens]
Length = 75
Score = 95.9 bits (237), Expect = 6e-21
Identities = 53/74 (71%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 1 MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV 60
M+KAH +LKK DK SLKLNGGR VQGIL GF FMNL+IDECV+MA SGQQ NI V
Sbjct: 1 MNKAHSLKLKKLMDK-LSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTV 59
Query: 61 EIRGNSIIMLEALE 74
EI GNSII L+ALE
Sbjct: 60 EIGGNSIITLKALE 73
>gi|169203577 PREDICTED: similar to small nuclear
ribonucleoprotein polypeptide G [Homo sapiens]
Length = 75
Score = 95.9 bits (237), Expect = 6e-21
Identities = 53/74 (71%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 1 MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV 60
M+KAH +LKK DK SLKLNGGR VQGIL GF FMNL+IDECV+MA SGQQ NI V
Sbjct: 1 MNKAHSLKLKKLMDK-LSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTV 59
Query: 61 EIRGNSIIMLEALE 74
EI GNSII L+ALE
Sbjct: 60 EIGGNSIITLKALE 73
>gi|169202369 PREDICTED: similar to small nuclear
ribonucleoprotein polypeptide G [Homo sapiens]
Length = 75
Score = 95.9 bits (237), Expect = 6e-21
Identities = 53/74 (71%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 1 MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV 60
M+KAH +LKK DK SLKLNGGR VQGIL GF FMNL+IDECV+MA SGQQ NI V
Sbjct: 1 MNKAHSLKLKKLMDK-LSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTV 59
Query: 61 EIRGNSIIMLEALE 74
EI GNSII L+ALE
Sbjct: 60 EIGGNSIITLKALE 73
>gi|7706423 U6 snRNA-associated Sm-like protein LSm7 [Homo
sapiens]
Length = 103
Score = 54.3 bits (129), Expect = 2e-08
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 8 ELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQKNIGM 59
+L K+ DK +K GGR GIL+GFDP +NLV+D +E + + +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 60 VEIRGNSIIML 70
V RG S++++
Sbjct: 74 VVCRGTSVVLI 84
>gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo
sapiens]
Length = 92
Score = 38.5 bits (88), Expect = 0.001
Identities = 15/48 (31%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 27 VQGILRGFDPFMNLVIDECVEM-ATSGQQKNIGMVEIRGNSIIMLEAL 73
++G + GFD +MNLV+D+ E+ + + +K +G + ++G++I +L+++
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens]
Length = 92
Score = 38.1 bits (87), Expect = 0.002
Identities = 15/48 (31%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 27 VQGILRGFDPFMNLVIDECVEM-ATSGQQKNIGMVEIRGNSIIMLEAL 73
++G + GFD +MNLV+D+ E+ + + +K +G + ++G +I +L+++
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGGNITLLQSV 90
>gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens]
Length = 92
Score = 38.1 bits (87), Expect = 0.002
Identities = 15/48 (31%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 27 VQGILRGFDPFMNLVIDECVEM-ATSGQQKNIGMVEIRGNSIIMLEAL 73
++G + GFD +MNLV+D+ E+ + + +K +G + ++G +I +L+++
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGGNITLLQSV 90
>gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo
sapiens]
Length = 92
Score = 38.1 bits (87), Expect = 0.002
Identities = 15/48 (31%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 27 VQGILRGFDPFMNLVIDECVEM-ATSGQQKNIGMVEIRGNSIIMLEAL 73
++G + GFD +MNLV+D+ E+ + + +K +G + ++G +I +L+++
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGGNITLLQSV 90
>gi|7657313 Lsm1 protein [Homo sapiens]
Length = 133
Score = 38.1 bits (87), Expect = 0.002
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 14 DKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKN---IGMVEIRGNSIIML 70
DKK + L GR + G LR D F NLV+ + VE G++ G+ +RG ++++L
Sbjct: 15 DKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLL 74
Query: 71 EALE 74
++
Sbjct: 75 GEID 78
>gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo
sapiens]
Length = 96
Score = 37.7 bits (86), Expect = 0.002
Identities = 18/70 (25%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 9 LKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSG----QQKNIGMVEIRG 64
L+ + ++ ++ + GR + G L+GFD +NL++DE E S +Q +G+ +RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 65 NSIIMLEALE 74
+++ ++ ++
Sbjct: 65 DNVAVIGEID 74
>gi|5901998 Sm protein F [Homo sapiens]
Length = 80
Score = 37.0 bits (84), Expect = 0.003
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 9 LKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMVEIRGNSII 68
LK+ + +KLN G +G+L D +MN+ +++ E + G IRGN+++
Sbjct: 12 LKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVL 71
Query: 69 ML 70
+
Sbjct: 72 YI 73
>gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform
a [Homo sapiens]
Length = 91
Score = 33.9 bits (76), Expect = 0.029
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 2 SKAHPPEL-KKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMV 60
S+ P EL K + + + + + G L GFD F+N+V+++ E + + + I +
Sbjct: 10 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 61 E---IRGNSIIML 70
+ + GN+I ML
Sbjct: 70 DQILLNGNNITML 82
>gi|213385305 LSM5 homolog, U6 small nuclear RNA associated
isoform b [Homo sapiens]
Length = 62
Score = 32.7 bits (73), Expect = 0.065
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 21 LNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMVE---IRGNSIIML 70
+ + + G L GFD F+N+V+++ E + + + I ++ + GN+I ML
Sbjct: 1 MKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITML 53
>gi|195222722 LSM5 homolog, U6 small nuclear RNA associated
isoform b [Homo sapiens]
Length = 62
Score = 32.7 bits (73), Expect = 0.065
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 21 LNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMVE---IRGNSIIML 70
+ + + G L GFD F+N+V+++ E + + + I ++ + GN+I ML
Sbjct: 1 MKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITML 53
>gi|7657315 Lsm3 protein [Homo sapiens]
Length = 102
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/70 (20%), Positives = 36/70 (51%), Gaps = 13/70 (18%)
Query: 14 DKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATS-------------GQQKNIGMV 60
D++ +K+ R ++G L +D +N+++ + E T+ ++NI M+
Sbjct: 26 DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPML 85
Query: 61 EIRGNSIIML 70
+RG+ ++++
Sbjct: 86 FVRGDGVVLV 95
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 30.8 bits (68), Expect = 0.25
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 1 MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVE----------MAT 50
M+ ++ + D + L GR G + FD MNL++ +C E A
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 51 SGQQKNIGMVEIRGNSIIML 70
+++ +G+V +RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B'
isoform B [Homo sapiens]
Length = 231
Score = 30.8 bits (68), Expect = 0.25
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 1 MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVE----------MAT 50
M+ ++ + D + L GR G + FD MNL++ +C E A
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 51 SGQQKNIGMVEIRGNSIIML 70
+++ +G+V +RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>gi|157364947 ecotropic viral integration site 1 isoform a [Homo
sapiens]
Length = 1115
Score = 29.6 bits (65), Expect = 0.55
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 11 KFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNI 57
K+ D+ FS+ N RHV+ I PF + D C GQQ N+
Sbjct: 828 KYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCDRCF-----GQQTNL 869
>gi|157364945 ecotropic viral integration site 1 isoform b [Homo
sapiens]
Length = 1051
Score = 29.6 bits (65), Expect = 0.55
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 11 KFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNI 57
K+ D+ FS+ N RHV+ I PF + D C GQQ N+
Sbjct: 764 KYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCDRCF-----GQQTNL 805
>gi|157364943 ecotropic viral integration site 1 isoform b [Homo
sapiens]
Length = 1051
Score = 29.6 bits (65), Expect = 0.55
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 11 KFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNI 57
K+ D+ FS+ N RHV+ I PF + D C GQQ N+
Sbjct: 764 KYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCDRCF-----GQQTNL 805
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 28.9 bits (63), Expect = 0.94
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 1 MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVE----------MAT 50
M+ ++ + D + L GR G + FD MNL++ +C E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 51 SGQQKNIGMVEIRGNSIIML 70
+++ +G+V +RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 28.9 bits (63), Expect = 0.94
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 1 MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVE----------MAT 50
M+ ++ + D + L GR G + FD MNL++ +C E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 51 SGQQKNIGMVEIRGNSIIML 70
+++ +G+V +RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 28.9 bits (63), Expect = 0.94
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 1 MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVE----------MAT 50
M+ ++ + D + L GR G + FD MNL++ +C E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 51 SGQQKNIGMVEIRGNSIIML 70
+++ +G+V +RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 28.9 bits (63), Expect = 0.94
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 1 MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVE----------MAT 50
M+ ++ + D + L GR G + FD MNL++ +C E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 51 SGQQKNIGMVEIRGNSIIML 70
+++ +G+V +RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 28.9 bits (63), Expect = 0.94
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 1 MSKAHPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVE----------MAT 50
M+ ++ + D + L GR G + FD MNL++ +C E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 51 SGQQKNIGMVEIRGNSIIML 70
+++ +G+V +RG +++ +
Sbjct: 61 REEKRVLGLVLLRGENLVSM 80
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,669,629
Number of Sequences: 37866
Number of extensions: 83845
Number of successful extensions: 129
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 39
length of query: 74
length of database: 18,247,518
effective HSP length: 46
effective length of query: 28
effective length of database: 16,505,682
effective search space: 462159096
effective search space used: 462159096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.