Guide to the Human Genome
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Name: AFAP1L1 Sequence: fasta or formatted (725aa) NCBI GI: 226437595
Description:

actin filament associated protein 1-like 1 isoform 2

Referenced in:

Cytoskeleton

Other entries for this name:
alt prot [768aa] actin filament associated protein 1-like 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         50           2
 C cysteine            2.5         18           2
 D aspartate           5.7         41           2
 E glutamate          10.3         75           5
 F phenylalanine       1.7         12           1
 G glycine             5.5         40           2
 H histidine           2.5         18           1
 I isoleucine          2.6         19           2
 K lysine              7.4         54           3
 L leucine            10.9         79           3
 M methionine          1.5         11           1
 N asparagine          2.2         16           1
 P proline             5.8         42           3
 Q glutamine           4.0         29           2
 R arginine            7.2         52           2
 S serine              9.5         69           3
 T threonine           3.6         26           2
 V valine              5.8         42           1
 W tryptophan          1.1          8           1
 Y tyrosine            3.3         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   actin filament associated protein 1-like 1 isoform ... 
AFAP1L1               0.990   actin filament associated protein 1-like 1 isoform 1...
AFAP1                 0.372   actin filament associated protein 1 
AFAP1                 0.297   actin filament associated protein 1 isoform a [Homo...
AFAP1L2               0.200   KIAA1914 protein isoform 1 
AFAP1L2               0.200   KIAA1914 protein isoform 2 
DSP                   0.013   desmoplakin isoform II 
DSP                   0.013   desmoplakin isoform I 
CALD1                 0.013   caldesmon 1 isoform 1 
GCC2                  0.012   GRIP and coiled-coil domain-containing 2 
CEP250                0.012   centrosomal protein 2 
FAM184B               0.012   hypothetical protein LOC27146 
ITSN2                 0.011   intersectin 2 isoform 3 
ITSN2                 0.011   intersectin 2 isoform 1 
ITSN2                 0.011   intersectin 2 isoform 2 
CCDC88B               0.011   coiled-coil domain containing 88 
MAP4K4                0.010   mitogen-activated protein kinase kinase kinase kinas...
BAZ2B                 0.010   bromodomain adjacent to zinc finger domain, 2B [Homo...
LOC440243             0.010   PREDICTED: Putative golgin subfamily A member 6-lik...
CCDC147               0.010   coiled-coil domain containing 147 
EIF3A                 0.010   eukaryotic translation initiation factor 3, subunit 1...
MYO18A                0.010   myosin 18A isoform b 
MYO18A                0.010   myosin 18A isoform a 
GIGYF2                0.010   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.010   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.010   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.010   GRB10 interacting GYF protein 2 isoform b 
PLEC1                 0.010   plectin 1 isoform 11 
PLEC1                 0.010   plectin 1 isoform 10 
PLEC1                 0.010   plectin 1 isoform 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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