Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CCL27 Sequence: fasta or formatted (112aa) NCBI GI: 5730035
Description:

small inducible cytokine A27 precursor

Referenced in:

Chemokines and Their Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4          6           2
 C cysteine            4.5          5           2
 D aspartate           3.6          4           1
 E glutamate           3.6          4           1
 F phenylalanine       4.5          5           1
 G glycine             4.5          5           1
 H histidine           4.5          5           1
 I isoleucine          2.7          3           1
 K lysine              6.2          7           1
 L leucine            19.6         22           4
 M methionine          2.7          3           1
 N asparagine          1.8          2           1
 P proline             8.9         10           2
 Q glutamine           7.1          8           1
 R arginine            4.5          5           1
 S serine              7.1          8           1
 T threonine           4.5          5           1
 V valine              2.7          3           1
 W tryptophan          0.9          1           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small inducible cytokine A27 precursor 
CCL28                 0.191   chemokine (C-C motif) ligand 28 precursor 
CCL25                 0.038   small inducible cytokine A25 precursor 
ASTN2                 0.014   astrotactin 2 isoform c 
ASTN2                 0.014   astrotactin 2 isoform b 
ASTN2                 0.014   astrotactin 2 isoform a 
LOC100131389          0.010   PREDICTED: hypothetical protein 
LOC100131389          0.010   PREDICTED: hypothetical protein 
LOC100131389          0.010   PREDICTED: hypothetical protein 
LOC100131389          0.010   PREDICTED: hypothetical protein 
C11orf53              0.010   hypothetical protein LOC341032 
ZER1                  0.010   zyg-11 homolog B (C. elegans)-like 
ARHGEF7               0.005   PAK-interacting exchange factor beta isoform c [Hom...
CCL13                 0.005   small inducible cytokine A13 precursor 
ACP6                  0.005   acid phosphatase 6, lysophosphatidic 
KIAA0415              0.005   hypothetical protein LOC9907 
LOC100291385          0.005   PREDICTED: hypothetical protein XP_002347391 
PELP1                 0.005   proline, glutamic acid and leucine rich protein 1 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press