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Search of human proteins with 224809412
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|224809412 myocyte enhancer factor 2B isoform a [Homo
sapiens]
(368 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|224809412 myocyte enhancer factor 2B isoform a [Homo sapiens] 771 0.0
gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens] 540 e-154
gi|19923215 myocyte enhancer factor 2C isoform 1 [Homo sapiens] 191 9e-49
gi|196114945 myocyte enhancer factor 2C isoform 2 [Homo sapiens] 184 1e-46
gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens] 181 7e-46
gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens] 180 2e-45
gi|5174545 myocyte enhancer factor 2D [Homo sapiens] 180 2e-45
gi|146134388 YLP motif containing 1 [Homo sapiens] 74 2e-13
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 71 2e-12
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 69 5e-12
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 69 5e-12
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 69 5e-12
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 69 9e-12
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 68 1e-11
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 67 3e-11
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 66 6e-11
gi|47132519 Ras association and pleckstrin homology domains 1 is... 66 6e-11
gi|163965366 nascent polypeptide-associated complex alpha subuni... 66 6e-11
gi|160707881 formin 2 [Homo sapiens] 65 1e-10
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 65 1e-10
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 65 1e-10
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 64 2e-10
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 64 2e-10
gi|11386183 WAS protein family, member 2 [Homo sapiens] 64 2e-10
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 64 2e-10
gi|110832843 TBP-associated factor 4 [Homo sapiens] 64 3e-10
gi|19924099 synapsin I isoform Ia [Homo sapiens] 64 3e-10
gi|19924097 synapsin I isoform Ib [Homo sapiens] 64 3e-10
gi|14249150 single stranded DNA binding protein 4 isoform a [Hom... 63 4e-10
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 63 5e-10
>gi|224809412 myocyte enhancer factor 2B isoform a [Homo sapiens]
Length = 368
Score = 771 bits (1992), Expect = 0.0
Identities = 368/368 (100%), Positives = 368/368 (100%)
Query: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST
Sbjct: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
Query: 61 DMDRVLLKYTEYSEPHESRTNTDILETLKRRGIGLDGPELEPDEGPEEPGEKFRRLAGEG 120
DMDRVLLKYTEYSEPHESRTNTDILETLKRRGIGLDGPELEPDEGPEEPGEKFRRLAGEG
Sbjct: 61 DMDRVLLKYTEYSEPHESRTNTDILETLKRRGIGLDGPELEPDEGPEEPGEKFRRLAGEG 120
Query: 121 GDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP 180
GDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP
Sbjct: 121 GDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP 180
Query: 181 GLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTAT 240
GLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTAT
Sbjct: 181 GLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTAT 240
Query: 241 PGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLG 300
PGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLG
Sbjct: 241 PGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLG 300
Query: 301 EEGPPTRGASPPTPPVSIKSERLSPAPGGPGDFPKTFPYPLLLARSLAEPLRPGPALRRL 360
EEGPPTRGASPPTPPVSIKSERLSPAPGGPGDFPKTFPYPLLLARSLAEPLRPGPALRRL
Sbjct: 301 EEGPPTRGASPPTPPVSIKSERLSPAPGGPGDFPKTFPYPLLLARSLAEPLRPGPALRRL 360
Query: 361 PLADGWPR 368
PLADGWPR
Sbjct: 361 PLADGWPR 368
>gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]
Length = 365
Score = 540 bits (1392), Expect = e-154
Identities = 281/350 (80%), Positives = 282/350 (80%), Gaps = 18/350 (5%)
Query: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST
Sbjct: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
Query: 61 DMDRVLLKYTEYSEPHESRTNTDILETLKRRGIGLDGPELEPDEGPEEPGEKFRRLAGEG 120
DMDRVLLKYTEYSEPHESRTNTDILETLKRRGIGLDGPELEPDEGPEEPGEKFRRLAGEG
Sbjct: 61 DMDRVLLKYTEYSEPHESRTNTDILETLKRRGIGLDGPELEPDEGPEEPGEKFRRLAGEG 120
Query: 121 GDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP 180
GDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP
Sbjct: 121 GDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP 180
Query: 181 GLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTAT 240
GLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTAT
Sbjct: 181 GLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTAT 240
Query: 241 PGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPS------RGDGPPAV----- 289
PGPPLGSFPFLPGGPP P PP P S R G PA
Sbjct: 241 PGPPLGSFPFLPGGPPVGAEAWARRVPQPAAPPRRPPQSASSLSASLRPPGAPATFLRPS 300
Query: 290 ---SSQPSGGRSLGEEGPPTRGASPPTPPVSIKSERLSPAPGGPGDFPKT 336
S P +SL GPP G PT R SP P P T
Sbjct: 301 PIPCSSPGPWQSLCGLGPPCAGCPWPTAGPG----RRSPGGTSPERSPGT 346
>gi|19923215 myocyte enhancer factor 2C isoform 1 [Homo sapiens]
Length = 473
Score = 191 bits (485), Expect = 9e-49
Identities = 130/323 (40%), Positives = 174/323 (53%), Gaps = 27/323 (8%)
Query: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
MGRKKIQI+RI+D+RNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNS N+LFQYAST
Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYAST 60
Query: 61 DMDRVLLKYTEYSEPHESRTNTDILETLKRRGI-GLDGPELEPDEG---PEEPGEKFRRL 116
DMD+VLLKYTEY+EPHESRTN+DI+ETL+++G+ G D P+ + D+ E +K+R++
Sbjct: 61 DMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCDSPDPDADDSVGHSPESEDKYRKI 120
Query: 117 AGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPS-PFRPAAP 175
E D + R RL A+PPP + + ++P S S +
Sbjct: 121 -NEDIDLMISRQRLC--------------AVPPPNFE---MPVSIPVSSHNSLVYSNPVS 162
Query: 176 KAGPPGLVHPLFSPSHLTSKTPPPL--YLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQ 233
G P L+ PL PS + P + P+ G L GG G + +
Sbjct: 163 SLGNPNLL-PLAHPSLQRNSMSPGVTHRPPSAGNTGGLMGGDLTSGAGTSAGNGYGNPRN 221
Query: 234 NPCSTATPGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQP 293
+P +PG + P G+ + P +L PP PS + + +Q
Sbjct: 222 SPGLLVSPGNLNKNMQAKSPPPMNLGMNNRKPDLRVLIPPGSKNTMPSVSEDVDLLLNQR 281
Query: 294 -SGGRSLGEEGPPTRGASPPTPP 315
+ +S P + PT P
Sbjct: 282 INNSQSAQSLATPVVSVATPTLP 304
>gi|196114945 myocyte enhancer factor 2C isoform 2 [Homo sapiens]
Length = 463
Score = 184 bits (467), Expect = 1e-46
Identities = 149/404 (36%), Positives = 194/404 (48%), Gaps = 71/404 (17%)
Query: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
MGRKKIQI+RI+D+RNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNS N+LFQYAST
Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYAST 60
Query: 61 DMDRVLLKYTEYSEPHESRTNTDILETL-KRRGIGLDGPE------LEP--DEGPEEPGE 111
DMD+VLLKYTEY+EPHESRTN+DI+E L K+ G + P+ L P +E ++ E
Sbjct: 61 DMDKVLLKYTEYNEPHESRTNSDIVEALNKKENKGCESPDPDSSYALTPRTEEKYKKINE 120
Query: 112 KFRRLAGEGGDPALP----------------------------RPRLYPAA-PAMP---- 138
+F + PA+P P L P A P++
Sbjct: 121 EFDNMIKSHKIPAVPPPNFEMPVSIPVSSHNSLVYSNPVSSLGNPNLLPLAHPSLQRNSM 180
Query: 139 SPDVVYGALPPPGCDPSGL--GEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKT 196
SP V + PP + GL G+ + P+ P LV P ++ +K+
Sbjct: 181 SPGVTH--RPPSAGNTGGLMGGDLTSGAGTSAGNGYGNPRNSPGLLVSPGNLNKNMQAKS 238
Query: 197 PPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSF--PFLP-- 252
PPP+ L R+ DL + P G NT S+ + N S + P+ S P LP
Sbjct: 239 PPPMNLGMNNRKPDL--RVLIPPGSKNTMPSVNQRINNSQSAQSLATPVVSVATPTLPGQ 296
Query: 253 --GGPP---------EYGLGDPP-------PPPGLLQPPTLAPWQPSRGDGPPAVSSQPS 294
GG P EY L L ++ WQ P +
Sbjct: 297 GMGGYPSAISTTYGTEYSLSSADLSSLSGFNTASALHLGSVTGWQQQHLHNMPPSALSQL 356
Query: 295 GGRSLGEEGPPTRGASPPTPPVSIKSERLSPAPGGPGDFPKTFP 338
G + + + P T ++IKSE +SP P P +P
Sbjct: 357 GACTSTHLSQSSNLSLPSTQSLNIKSEPVSP-PRDRTTTPSRYP 399
>gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens]
Length = 497
Score = 181 bits (460), Expect = 7e-46
Identities = 123/293 (41%), Positives = 161/293 (54%), Gaps = 29/293 (9%)
Query: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
MGRKKIQI+RI+D+RNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNS+N+LFQYAST
Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 60
Query: 61 DMDRVLLKYTEYSEPHESRTNTDILETLKRRGI-GLDGPELEPDEGPEEP--GEKFRRLA 117
DMD+VLLKYTEY+EPHESRTN+DI+ETL+++G+ G + P+ + D P ++F +L
Sbjct: 61 DMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCESPDAD-DYFEHSPLSEDRFSKL- 118
Query: 118 GEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKA 177
E D R P +P P ++ P P+ L P S SP A+
Sbjct: 119 NEDSDFIFKR-----GPPGLP-PQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTL 172
Query: 178 GPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDL--------PGGL-AGPRG-GLNTSRS 227
++ P + H P P+ G + P G + P G G SR+
Sbjct: 173 TDSSMLSPPQTTLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRA 232
Query: 228 L--------YSGLQNPCSTATPGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQP 272
+ L T +P PP G + P+ + PP G++ P
Sbjct: 233 SPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPP 285
>gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]
Length = 499
Score = 180 bits (456), Expect = 2e-45
Identities = 123/294 (41%), Positives = 159/294 (54%), Gaps = 29/294 (9%)
Query: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
MGRKKIQI+RI+D+RNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNS+N+LFQYAST
Sbjct: 1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 60
Query: 61 DMDRVLLKYTEYSEPHESRTNTDILETL-KRRGIGLDGPELEPDEG---PEEPGEKFRRL 116
DMD+VLLKYTEY+EPHESRTN+DI+E L K+ G D P +PD EK++++
Sbjct: 61 DMDKVLLKYTEYNEPHESRTNSDIVEALNKKEHRGCDSP--DPDTSYVLTPHTEEKYKKI 118
Query: 117 AGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPK 176
E + R + AP +P P ++ P P+ L P S SP A+
Sbjct: 119 NEEFDN----MMRNHKIAPGLP-PQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASST 173
Query: 177 AGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDL--------PGGL-AGPRG-GLNTSR 226
++ P + H P P+ G + P G + P G G SR
Sbjct: 174 LTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSR 233
Query: 227 SL--------YSGLQNPCSTATPGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQP 272
+ + L T +P PP G + P+ + PP G++ P
Sbjct: 234 ASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPP 287
>gi|5174545 myocyte enhancer factor 2D [Homo sapiens]
Length = 521
Score = 180 bits (456), Expect = 2e-45
Identities = 171/468 (36%), Positives = 204/468 (43%), Gaps = 130/468 (27%)
Query: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
MGRKKIQI RI D+RNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN +N+LFQYAST
Sbjct: 1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST 60
Query: 61 DMDRVLLKYTEYSEPHESRTNTDILETLKRRGI-GLDGPELEPDEGPEEP---GEKFRRL 116
DMD+VLLKYTEY+EPHESRTN DI+ETL+++G G D PE + ++ E+ +K+RR
Sbjct: 61 DMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRR- 119
Query: 117 AGEGGDPALPRPRLYPAAPAMPSPDVV-------------YGALPPPG------CDPSGL 157
A E D R AP P V G+L P DP L
Sbjct: 120 ASEELDGLFRRYGSTVPAPNFAMPVTVPVSNQSSLQFSNPSGSLVTPSLVTSSLTDPRLL 179
Query: 158 GEALPAQSRPS-----PFRPAAPKA-------------------------GPPGLVHPLF 187
PA R S P RPA+ A PGL+ P+
Sbjct: 180 SPQQPALQRNSVSPGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLL-PVA 238
Query: 188 SPSHLT----SKTPPP----LYLPTEGRRSDLPGGLAGPRGG-----------------L 222
+ + L +K+PPP L R+ DL + G L
Sbjct: 239 NGNSLNKVIPAKSPPPPTHSTQLGAPSRKPDLRVITSQAGKGLMHHLTEDHLDLNNAQRL 298
Query: 223 NTSRSLYSGLQNPCSTATP-----GPPLGSFPFL--------------------PGG--- 254
S+S +S S ATP G P S P PGG
Sbjct: 299 GVSQSTHSLTTPVVSVATPSLLSQGLPFSSMPTAYNTDYQLTSAELSSLPAFSSPGGLSL 358
Query: 255 ----------PPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQ--PSGGRSLGEE 302
P+ PP QP P QP + PP S P +L
Sbjct: 359 GNVTAWQQPQQPQQPQQPQPPQQQPPQPQQPQPQQPQQPQQPPQQQSHLVPVSLSNLIPG 418
Query: 303 GP-PTRGAS---PPTPPVSIKSERL------SPAPGGPGDFPKTFPYP 340
P P GA+ P +SIKSE + SPAP P FP P P
Sbjct: 419 SPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPAARPEP 466
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 74.3 bits (181), Expect = 2e-13
Identities = 73/254 (28%), Positives = 101/254 (39%), Gaps = 53/254 (20%)
Query: 123 PALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGL 182
P +P P L P+ P P + +PPPG P + +LP P P+ AGPP
Sbjct: 531 PTMPPPVLPPSLPPPVMPPALPATVPPPGMPPPVMPPSLPTSVPPPGMPPSLSSAGPP-- 588
Query: 183 VHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPG 242
P+ P L+S PPP+ P P ++T
Sbjct: 589 --PVLPPPSLSSAGPPPVLPP-------------------------------PSLSSTAP 615
Query: 243 PPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQ----PSGGRS 298
PP+ P L P G+ PPPG+ P P Q + PPA SSQ P R
Sbjct: 616 PPVMPLPPLSSATPPPGI----PPPGV---PQGIPPQLTAAPVPPASSSQSSQVPEKPRP 668
Query: 299 LGEEGPPTRGASPPT---PPVSI--KSERL-SPAPGGPGDFP-KTFPYPLLLARSLAEPL 351
P + G++PPT PP+ SE++ S AP P +F L S A P
Sbjct: 669 ALLPTPVSFGSAPPTTYHPPLQSAGPSEQVNSKAPLSKSALPYSSFSSDQGLGESSAAPS 728
Query: 352 RPGPALRRLPLADG 365
+P A++ +P+ G
Sbjct: 729 QPITAVKDMPVRSG 742
Score = 53.1 bits (126), Expect = 4e-07
Identities = 77/293 (26%), Positives = 107/293 (36%), Gaps = 50/293 (17%)
Query: 116 LAGEGGDPALPRPRLYPAA--PAMPSPDV-------------VYGALPPPGCDPSGLGEA 160
L+ G P LP P L A P +P P + + A PPPG P G+ +
Sbjct: 582 LSSAGPPPVLPPPSLSSAGPPPVLPPPSLSSTAPPPVMPLPPLSSATPPPGIPPPGVPQG 641
Query: 161 LPAQSRPSPFRPAAPKAGP--PGLVHPLFSPSHLT-SKTPPPLYLPTEGRRSDLPGGLAG 217
+P Q +P PA+ P P P+ ++ PP Y P +S P
Sbjct: 642 IPPQLTAAPVPPASSSQSSQVPEKPRPALLPTPVSFGSAPPTTYHPP--LQSAGPSEQVN 699
Query: 218 PRGGLNTSRSLYSGLQNPC----STATPGPPLGSFPFLP---GG----PPEYGLGDPPPP 266
+ L+ S YS + S+A P P+ + +P GG PP + P
Sbjct: 700 SKAPLSKSALPYSSFSSDQGLGESSAAPSQPITAVKDMPVRSGGLLPDPPRSSYLESPRG 759
Query: 267 PGLLQPPTL----APWQPSRGDGPPAVSSQPSGGRSLGE----EGPPTRGASPPTPPVS- 317
P P + + R GP ++P G R E EG ++ P P S
Sbjct: 760 PRFDGPRRFEDLGSRCEGPRPKGPRFEGNRPDGPRPRYEGHPAEGTKSKWGMIPRGPASQ 819
Query: 318 ---IKSERLSPAPGGP---GDFPKTFPYPLLLARSLAEPLRPGPALRRLPLAD 364
S LSP GP G P +S AEPL + + PLAD
Sbjct: 820 FYITPSTSLSPRQSGPQWKGPKPAFGQQHQQQPKSQAEPL----SGNKEPLAD 868
Score = 42.7 bits (99), Expect = 5e-04
Identities = 39/123 (31%), Positives = 50/123 (40%), Gaps = 19/123 (15%)
Query: 241 PGPPLGSFPFLPGGPPEYGLGD--PPPPPGLLQPPTLAPWQPSRGDGPPAVSSQ---PSG 295
P PPL P +PGG G GD PPPPP P +Q + + Q P G
Sbjct: 82 PPPPLPPPPVMPGG----GYGDWQPPPPPMPPPPGPALSYQKQQQYKHQMLHHQRDGPPG 137
Query: 296 GRSLGEEGPPTRGASPPTPPVSI--KSERLSPAPGGPGDFPKTFPYPLLLARSLAEPLRP 353
+ E PP SPP PP S S+ P P P + YP ++ P +P
Sbjct: 138 LVPMELESPP---ESPPVPPGSYMPPSQSYMPPPQPPPSY-----YPPTSSQPYLPPAQP 189
Query: 354 GPA 356
P+
Sbjct: 190 SPS 192
Score = 37.7 bits (86), Expect = 0.017
Identities = 65/249 (26%), Positives = 79/249 (31%), Gaps = 59/249 (23%)
Query: 131 YPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGP----------- 179
Y + P P V PPP P L EA P S PAAP +
Sbjct: 8 YGGSSHYPPPPV-----PPP--PPVALPEASPGPGYSSSTTPAAPSSSGFMSFREQHLAQ 60
Query: 180 --------PGLVHPLFSPSHLTSKT-PPPLYLPTEGRRSDLPGGLA-----GPRGGLNTS 225
+ + P HL PPP +P G P GP
Sbjct: 61 LQQLQQMHQKQMQCVLQPHHLPPPPLPPPPVMPGGGYGDWQPPPPPMPPPPGPALSYQKQ 120
Query: 226 RSLYSGLQNPCSTATPG-------PPLGSFPFLPGG--PPEYGLGDPPPPPGLLQPPT-- 274
+ + + PG P S P PG PP PP PP PPT
Sbjct: 121 QQYKHQMLHHQRDGPPGLVPMELESPPESPPVPPGSYMPPSQSYMPPPQPPPSYYPPTSS 180
Query: 275 ---LAPWQPSRGDGP---------PAVSSQPSGGRSL---GEEGPPTRGASPPTPPVS-I 318
L P QPS P P+ SS S +S + P+ ASP P
Sbjct: 181 QPYLPPAQPSPSQSPPSQSYLAPTPSYSSSSSSSQSYLSHSQSYLPSSQASPSRPSQGHS 240
Query: 319 KSERLSPAP 327
KS+ L+P P
Sbjct: 241 KSQLLAPPP 249
Score = 36.6 bits (83), Expect = 0.037
Identities = 32/107 (29%), Positives = 41/107 (38%), Gaps = 18/107 (16%)
Query: 255 PPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPTRGASPPTP 314
PP PPP + PP L P P P ++ P G PP PP+
Sbjct: 518 PPFVPYSQMPPPLPTMPPPVLPPSLPPPVMPPALPATVPPPGMP-----PP---VMPPSL 569
Query: 315 PVSIKSERLSPAPGGPGDFPKTFPYPLLLARSLAE----PLRPGPAL 357
P S+ P PG P P P+L SL+ P+ P P+L
Sbjct: 570 PTSV------PPPGMPPSLSSAGPPPVLPPPSLSSAGPPPVLPPPSL 610
Score = 35.0 bits (79), Expect = 0.11
Identities = 57/213 (26%), Positives = 74/213 (34%), Gaps = 42/213 (19%)
Query: 125 LPRPRLYPAAPAMPSPDVVYGAL-PPPGCDPSGLGEALPAQSRPSPFRPAA--PKAGPPG 181
LP P L P P MP YG PPP P G AL Q + + GPPG
Sbjct: 81 LPPPPL-PPPPVMPGGG--YGDWQPPPPPMPPPPGPALSYQKQQQYKHQMLHHQRDGPPG 137
Query: 182 LVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATP 241
LV + PP Y+P +S +P P S Y
Sbjct: 138 LVPMELESPPESPPVPPGSYMPPS--QSYMPPPQPPP--------SYY------------ 175
Query: 242 GPPLGSFPFLPGGPPEYGLGDPPPPPGLLQP-PTLAPWQPSRGD----------GPPAVS 290
PP S P+LP P + PP L P P+ + S A
Sbjct: 176 -PPTSSQPYLP--PAQPSPSQSPPSQSYLAPTPSYSSSSSSSQSYLSHSQSYLPSSQASP 232
Query: 291 SQPSGGRSLGEEGPPTRGASPPTPPVSIKSERL 323
S+PS G S + P ++PP +++ E L
Sbjct: 233 SRPSQGHSKSQLLAPPPPSAPPGNKTTVQQEPL 265
Score = 33.5 bits (75), Expect = 0.31
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 132 PAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSP 169
P+AP +P P V + ++PPPG P G +P S+P P
Sbjct: 1603 PSAPVLPPPPV-HSSIPPPGPVPMG----MPPMSKPPP 1635
Score = 32.7 bits (73), Expect = 0.53
Identities = 24/65 (36%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 252 PGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPTRGASP 311
PG P G PPPP G P R PPA SS P + PP P
Sbjct: 1503 PGMYPPPGSYRPPPPMG------KPPGSIVRPSAPPARSSVPVTRPPVPIPPPPPPPPLP 1556
Query: 312 PTPPV 316
P PPV
Sbjct: 1557 PPPPV 1561
Score = 30.8 bits (68), Expect = 2.0
Identities = 38/170 (22%), Positives = 56/170 (32%), Gaps = 31/170 (18%)
Query: 125 LPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALP------AQSRPSPFRPAAPKAG 178
LP + P+ P+ A PPP P A+++ + + AAP+
Sbjct: 225 LPSSQASPSRPSQGHSKSQLLAPPPPSAPPGNKTTVQQEPLESGAKNKSTEQQQAAPEPD 284
Query: 179 P----PGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQN 234
P P + HL S + + LPG GP +T + +
Sbjct: 285 PSTMTPQEQQQYWYRQHLLSLQ--------QRTKVHLPGHKKGPVVAKDTPEPVKEEVTV 336
Query: 235 PCSTATPGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGD 284
P ++ P P P P PPP PP L P +P D
Sbjct: 337 PATSQVPESPSSEEP-------------PLPPPNEEVPPPLPPEEPQSED 373
Score = 30.4 bits (67), Expect = 2.6
Identities = 44/187 (23%), Positives = 66/187 (35%), Gaps = 38/187 (20%)
Query: 108 EPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRP 167
E E+ +++ G +P + L P + + G PPPG
Sbjct: 1468 EQKEQLQKMKDFGSEPQMA-DHLPPQESRLQNTSSRPGMYPPPGS--------------- 1511
Query: 168 SPFRPAAPKAGPPG-LVHPLFSPSHLT-SKTPPPLYLPTEGRRSDLP----------GGL 215
+RP P PPG +V P P+ + T PP+ +P LP +
Sbjct: 1512 --YRPPPPMGKPPGSIVRPSAPPARSSVPVTRPPVPIPPPPPPPPLPPPPPVIKPQTSAV 1569
Query: 216 AGPRGGLNTSRSLY-----SGLQNPCSTATPGPPLGSFPFLPGGPPEYGLGDPPPPPGLL 270
R ++ L+ GL + + T P S P LP PP + PP P +
Sbjct: 1570 EQERWDEDSFYGLWDTNDEQGLNSEFKSETAAIP--SAPVLP-PPPVHSSIPPPGPVPMG 1626
Query: 271 QPPTLAP 277
PP P
Sbjct: 1627 MPPMSKP 1633
Score = 30.4 bits (67), Expect = 2.6
Identities = 34/133 (25%), Positives = 47/133 (35%), Gaps = 22/133 (16%)
Query: 231 GLQNPCSTATPGPPLGSFP---FLPGGPPEYG----------LGDPPPPPGLLQPPTLAP 277
G+ P + P PP+G P P PP + PPPPP L PP +
Sbjct: 1504 GMYPPPGSYRPPPPMGKPPGSIVRPSAPPARSSVPVTRPPVPIPPPPPPPPLPPPPPVIK 1563
Query: 278 WQPS-----RGDGPPAV----SSQPSGGRSLGEEGPPTRGASPPTPPVSIKSERLSPAPG 328
Q S R D ++ G S + ++P PP + S P P
Sbjct: 1564 PQTSAVEQERWDEDSFYGLWDTNDEQGLNSEFKSETAAIPSAPVLPPPPVHSSIPPPGPV 1623
Query: 329 GPGDFPKTFPYPL 341
G P + P P+
Sbjct: 1624 PMGMPPMSKPPPV 1636
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 70.9 bits (172), Expect = 2e-12
Identities = 67/207 (32%), Positives = 76/207 (36%), Gaps = 24/207 (11%)
Query: 123 PALPRPRLYPAAPAMPSPDVVY-GALPPPGCDPSGLGEALPAQSRPSPFRPAA-----PK 176
P+ P P + +P P + G+ PPP P L +P P P P A P
Sbjct: 218 PSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPS 277
Query: 177 AGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRS-----DLPGGLAGPRGGLNTSRSLYSG 231
AG PG HP SH PP +P G P GL P G S
Sbjct: 278 AGTPGAGHPGHGHSH--PHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGG-QPP 334
Query: 232 LQNPCSTATPGPPLGSFPFLPGGPP---EYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPA 288
+ P PGPP P P GPP G P PP G+ PP L P P GPP
Sbjct: 335 PRPPPGMPHPGPPPMGMP--PRGPPFGSPMGHPGPMPPHGMRGPPPLMP--PHGYTGPP- 389
Query: 289 VSSQPSGGRSLGEEGPPTRGASPPTPP 315
P G G PP PP PP
Sbjct: 390 --RPPPYGYQRGPLPPPRPTPRPPVPP 414
Score = 55.1 bits (131), Expect = 1e-07
Identities = 69/231 (29%), Positives = 79/231 (34%), Gaps = 82/231 (35%)
Query: 135 PAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAA-----PKAGPPGLVHPLFSP 189
P MP P +PPPG P G+ A+P P P P A P AG PG HP
Sbjct: 235 PGMPPPGSFPPPVPPPGALPPGIPPAMP----PPPMPPGAAGHGPPSAGTPGAGHPGHGH 290
Query: 190 SHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATP--GPPLGS 247
SH P P PGG+ P G++ + + G P P GPP GS
Sbjct: 291 SH-----PHPFP----------PGGM--PHPGMSQMQLAHHG---PHGLGHPHAGPP-GS 329
Query: 248 FPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPTR 307
GG P P PPPG+ P GPP
Sbjct: 330 -----GGQPP-----PRPPPGMPHP------------------------------GPPPM 349
Query: 308 GASPPTPPVSIKSERLSPAPGGPGDFP---KTFPYPLLLARSLAEPLRPGP 355
G P PP SP G PG P P PL+ P RP P
Sbjct: 350 GMPPRGPPFG------SPM-GHPGPMPPHGMRGPPPLMPPHGYTGPPRPPP 393
Score = 53.5 bits (127), Expect = 3e-07
Identities = 56/192 (29%), Positives = 64/192 (33%), Gaps = 41/192 (21%)
Query: 123 PALPRPRLYPAA--PAMPSPDVVYGALP--PPGCDPSGLGEALPAQSRPSPFRPAA---- 174
P +P P P PAMP P + GA PP G G S P PF P
Sbjct: 245 PPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHP 304
Query: 175 -----------------PKAGPPGL--VHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGL 215
P AGPPG P P + PPP+ +P G P G
Sbjct: 305 GMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSPMGH 364
Query: 216 AGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPEYGLGDPP-PPPGLLQPPT 274
GP G++ P P G P PP YG P PPP P
Sbjct: 365 PGPMPP--------HGMRGPPPLMPPHGYTG-----PPRPPPYGYQRGPLPPPRPTPRPP 411
Query: 275 LAPWQPSRGDGP 286
+ P P RG P
Sbjct: 412 VPPRGPLRGPLP 423
Score = 36.2 bits (82), Expect = 0.048
Identities = 35/114 (30%), Positives = 38/114 (33%), Gaps = 7/114 (6%)
Query: 105 GPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQ 164
GP G G GG P PRP P MP P +PP G P G P
Sbjct: 315 GPHGLGHPHAGPPGSGGQPP-PRP-----PPGMPHPGPPPMGMPPRG-PPFGSPMGHPGP 367
Query: 165 SRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGP 218
P R P P G P P + + P P PT G L GP
Sbjct: 368 MPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRGP 421
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 69.3 bits (168), Expect = 5e-12
Identities = 75/224 (33%), Positives = 85/224 (37%), Gaps = 36/224 (16%)
Query: 126 PRPRLYPAAPAM-----PSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP 180
PR + P AP P P LP P P S PSPF A PP
Sbjct: 359 PREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHP-----PHLSGPSPFSMNANLPPPP 413
Query: 181 GLVHPLFSPS--HLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSL----YSGLQN 234
L PL S S H S PPPL L + + LP A P G L S++L S
Sbjct: 414 AL-KPLSSLSTHHPPSAHPPPLQLMPQSQ--PLPSSPAQPPG-LTQSQNLPPPPASHPPT 469
Query: 235 PCSTATPGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPS 294
P PP PF+PGGPP PP P PP P PP + S
Sbjct: 470 GLHQVAPQPPFAQHPFVPGGPPPI---TPPTCPSTSTPPA----GPGTSAQPPCSGAAAS 522
Query: 295 GGRSLGEEGPPTRGASPPTPPVSIKSERLSPA--PGGPGDFPKT 336
GG G G+S P P V IK E L A P P P++
Sbjct: 523 GGSIAG-------GSSCPLPTVQIKEEALDDAEEPESPPPPPRS 559
Score = 44.3 bits (103), Expect = 2e-04
Identities = 68/257 (26%), Positives = 89/257 (34%), Gaps = 28/257 (10%)
Query: 123 PAL-PRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPG 181
PAL P+ P P PSP L PS A P P P + +AGP
Sbjct: 250 PALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPL- 308
Query: 182 LVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGG----LAGPRGGLN--TSRSLYSGLQNP 235
L HP P P LP + + P G A P L S+S Q P
Sbjct: 309 LQHP---------GPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPP 359
Query: 236 CSTATPGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQP--SRGDGPPAVSSQP 293
P PL P PP + P P PP L+ P + PP + +P
Sbjct: 360 REQPLPPAPLAMPHIKP--PPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKP 417
Query: 294 SGGRSLGEEGPPTRGASPPTPPVSIKSERLSPAPGGPGDFPKTF---PYPLLLARSLAEP 350
SL PP+ A PP + +S+ L +P P ++ P P +
Sbjct: 418 LS--SLSTHHPPS--AHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQ 473
Query: 351 LRPGPALRRLPLADGWP 367
+ P P + P G P
Sbjct: 474 VAPQPPFAQHPFVPGGP 490
Score = 43.1 bits (100), Expect = 4e-04
Identities = 71/254 (27%), Positives = 89/254 (35%), Gaps = 52/254 (20%)
Query: 121 GDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP 180
G P LP P P+A A+P P G A A ++P P AP
Sbjct: 203 GTPQLPTPGPTPSATAVP---------------PQGSPTASQAPNQPQ--APTAPVPHTH 245
Query: 181 GLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTAT 240
P P S PPP P L G P + L+ Q P
Sbjct: 246 IQQAPALHPQRPPSPHPPPHPSP-HPPLQPLTGSAGQPSAPSHAQPPLHG--QGP----- 297
Query: 241 PGP-PLGSFPFL--PGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGP----PAVSSQ- 292
PGP L + P L PG P +GL PP + Q G P P S Q
Sbjct: 298 PGPHSLQAGPLLQHPGPPQPFGL-----------PPQASQGQAPLGTSPAAAYPHTSLQL 346
Query: 293 PSGGRSLGEEGPPTRGASPPTPPV--SIKSERLSPAPGGPGDFPKTFPYPLLLAR----S 346
P+ +L + PP PP P IK +P P P P+ +P L+ S
Sbjct: 347 PASQSALQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPA--PQAHKHPPHLSGPSPFS 404
Query: 347 LAEPLRPGPALRRL 360
+ L P PAL+ L
Sbjct: 405 MNANLPPPPALKPL 418
Score = 35.4 bits (80), Expect = 0.082
Identities = 50/162 (30%), Positives = 61/162 (37%), Gaps = 43/162 (26%)
Query: 125 LPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVH 184
+P+ + P++PA P LPPP PA P+ AP+ PP H
Sbjct: 437 MPQSQPLPSSPAQPPGLTQSQNLPPP-----------PASHPPTGLHQVAPQ--PPFAQH 483
Query: 185 PLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCS--TATPG 242
P F P PPP+ PT S P AGP + Q PCS A+ G
Sbjct: 484 P-FVPG-----GPPPITPPTCPSTSTPP---AGPG----------TSAQPPCSGAAASGG 524
Query: 243 PPLG--SFPFLPGGPPEYGLGD------PPPPPGLLQP-PTL 275
G S P E L D PPPPP P PT+
Sbjct: 525 SIAGGSSCPLPTVQIKEEALDDAEEPESPPPPPRSPSPEPTV 566
Score = 32.7 bits (73), Expect = 0.53
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 240 TPGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDG--PPAVSS 291
T GP L FP+ PG P LG PP +L+ P P G PP +S+
Sbjct: 906 TAGPHLARFPYPPGTLPNPLLGQPPHEHEMLRHPVFGTPYPRDLPGAIPPPMSA 959
Score = 31.6 bits (70), Expect = 1.2
Identities = 47/190 (24%), Positives = 71/190 (37%), Gaps = 14/190 (7%)
Query: 75 PHESRTNTDILETLKRRGIGLDGPELEPDEG-PEEPGEK---FRRLAGEGGDPALPRPRL 130
PH + L L+R + L GP+L P+ P+ + R+A DP L R ++
Sbjct: 807 PHPFASFHPGLNPLERERLALAGPQLRPEMSYPDRLAAERIHAERMASLTSDP-LARLQM 865
Query: 131 YPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAG----PPG-LVHP 185
+ P ++ L DP G A P P A P PPG L +P
Sbjct: 866 FNVTPHHHQHSHIHSHLHLHQQDPLHQGSAGPVHPLVDPL-TAGPHLARFPYPPGTLPNP 924
Query: 186 LF-SPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPP 244
L P H P++ R DLPG + P + +++++ A
Sbjct: 925 LLGQPPHEHEMLRHPVFGTPYPR--DLPGAIPPPMSAAHQLQAMHAQSAELQRLAMEQQW 982
Query: 245 LGSFPFLPGG 254
L P + GG
Sbjct: 983 LHGHPHMHGG 992
Score = 30.4 bits (67), Expect = 2.6
Identities = 39/164 (23%), Positives = 56/164 (34%), Gaps = 11/164 (6%)
Query: 203 PTEGR------RSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPP 256
P+EG RS G + P+ +RS + +P + L PP
Sbjct: 126 PSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPP 185
Query: 257 EYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPTRGASPPTPPV 316
P PP P P+ G P A + P G + + + + P P
Sbjct: 186 ALQAPTGVTPAPSSAPPG-TPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHT 244
Query: 317 SI-KSERLSP-APGGPGDFPKTFPYPLL--LARSLAEPLRPGPA 356
I ++ L P P P P P+P L L S +P P A
Sbjct: 245 HIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHA 288
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 69.3 bits (168), Expect = 5e-12
Identities = 75/224 (33%), Positives = 85/224 (37%), Gaps = 36/224 (16%)
Query: 126 PRPRLYPAAPAM-----PSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP 180
PR + P AP P P LP P P S PSPF A PP
Sbjct: 913 PREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHP-----PHLSGPSPFSMNANLPPPP 967
Query: 181 GLVHPLFSPS--HLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSL----YSGLQN 234
L PL S S H S PPPL L + + LP A P G L S++L S
Sbjct: 968 AL-KPLSSLSTHHPPSAHPPPLQLMPQSQ--PLPSSPAQPPG-LTQSQNLPPPPASHPPT 1023
Query: 235 PCSTATPGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPS 294
P PP PF+PGGPP PP P PP P PP + S
Sbjct: 1024 GLHQVAPQPPFAQHPFVPGGPPPI---TPPTCPSTSTPPA----GPGTSAQPPCSGAAAS 1076
Query: 295 GGRSLGEEGPPTRGASPPTPPVSIKSERLSPA--PGGPGDFPKT 336
GG G G+S P P V IK E L A P P P++
Sbjct: 1077 GGSIAG-------GSSCPLPTVQIKEEALDDAEEPESPPPPPRS 1113
Score = 44.3 bits (103), Expect = 2e-04
Identities = 68/257 (26%), Positives = 89/257 (34%), Gaps = 28/257 (10%)
Query: 123 PAL-PRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPG 181
PAL P+ P P PSP L PS A P P P + +AGP
Sbjct: 804 PALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPL- 862
Query: 182 LVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGG----LAGPRGGLN--TSRSLYSGLQNP 235
L HP P P LP + + P G A P L S+S Q P
Sbjct: 863 LQHP---------GPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPP 913
Query: 236 CSTATPGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQP--SRGDGPPAVSSQP 293
P PL P PP + P P PP L+ P + PP + +P
Sbjct: 914 REQPLPPAPLAMPHIKP--PPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKP 971
Query: 294 SGGRSLGEEGPPTRGASPPTPPVSIKSERLSPAPGGPGDFPKTF---PYPLLLARSLAEP 350
SL PP+ A PP + +S+ L +P P ++ P P +
Sbjct: 972 LS--SLSTHHPPS--AHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQ 1027
Query: 351 LRPGPALRRLPLADGWP 367
+ P P + P G P
Sbjct: 1028 VAPQPPFAQHPFVPGGP 1044
Score = 43.1 bits (100), Expect = 4e-04
Identities = 71/254 (27%), Positives = 89/254 (35%), Gaps = 52/254 (20%)
Query: 121 GDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP 180
G P LP P P+A A+P P G A A ++P P AP
Sbjct: 757 GTPQLPTPGPTPSATAVP---------------PQGSPTASQAPNQPQ--APTAPVPHTH 799
Query: 181 GLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTAT 240
P P S PPP P L G P + L+ Q P
Sbjct: 800 IQQAPALHPQRPPSPHPPPHPSP-HPPLQPLTGSAGQPSAPSHAQPPLHG--QGP----- 851
Query: 241 PGP-PLGSFPFL--PGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGP----PAVSSQ- 292
PGP L + P L PG P +GL PP + Q G P P S Q
Sbjct: 852 PGPHSLQAGPLLQHPGPPQPFGL-----------PPQASQGQAPLGTSPAAAYPHTSLQL 900
Query: 293 PSGGRSLGEEGPPTRGASPPTPPV--SIKSERLSPAPGGPGDFPKTFPYPLLLAR----S 346
P+ +L + PP PP P IK +P P P P+ +P L+ S
Sbjct: 901 PASQSALQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPA--PQAHKHPPHLSGPSPFS 958
Query: 347 LAEPLRPGPALRRL 360
+ L P PAL+ L
Sbjct: 959 MNANLPPPPALKPL 972
Score = 35.4 bits (80), Expect = 0.082
Identities = 50/162 (30%), Positives = 61/162 (37%), Gaps = 43/162 (26%)
Query: 125 LPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVH 184
+P+ + P++PA P LPPP PA P+ AP+ PP H
Sbjct: 991 MPQSQPLPSSPAQPPGLTQSQNLPPP-----------PASHPPTGLHQVAPQ--PPFAQH 1037
Query: 185 PLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCS--TATPG 242
P F P PPP+ PT S P AGP + Q PCS A+ G
Sbjct: 1038 P-FVPG-----GPPPITPPTCPSTSTPP---AGPG----------TSAQPPCSGAAASGG 1078
Query: 243 PPLG--SFPFLPGGPPEYGLGD------PPPPPGLLQP-PTL 275
G S P E L D PPPPP P PT+
Sbjct: 1079 SIAGGSSCPLPTVQIKEEALDDAEEPESPPPPPRSPSPEPTV 1120
Score = 32.7 bits (73), Expect = 0.53
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 240 TPGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDG--PPAVSS 291
T GP L FP+ PG P LG PP +L+ P P G PP +S+
Sbjct: 1460 TAGPHLARFPYPPGTLPNPLLGQPPHEHEMLRHPVFGTPYPRDLPGAIPPPMSA 1513
Score = 31.6 bits (70), Expect = 1.2
Identities = 47/190 (24%), Positives = 71/190 (37%), Gaps = 14/190 (7%)
Query: 75 PHESRTNTDILETLKRRGIGLDGPELEPDEG-PEEPGEK---FRRLAGEGGDPALPRPRL 130
PH + L L+R + L GP+L P+ P+ + R+A DP L R ++
Sbjct: 1361 PHPFASFHPGLNPLERERLALAGPQLRPEMSYPDRLAAERIHAERMASLTSDP-LARLQM 1419
Query: 131 YPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAG----PPG-LVHP 185
+ P ++ L DP G A P P A P PPG L +P
Sbjct: 1420 FNVTPHHHQHSHIHSHLHLHQQDPLHQGSAGPVHPLVDPL-TAGPHLARFPYPPGTLPNP 1478
Query: 186 LF-SPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPP 244
L P H P++ R DLPG + P + +++++ A
Sbjct: 1479 LLGQPPHEHEMLRHPVFGTPYPR--DLPGAIPPPMSAAHQLQAMHAQSAELQRLAMEQQW 1536
Query: 245 LGSFPFLPGG 254
L P + GG
Sbjct: 1537 LHGHPHMHGG 1546
Score = 30.4 bits (67), Expect = 2.6
Identities = 39/164 (23%), Positives = 56/164 (34%), Gaps = 11/164 (6%)
Query: 203 PTEGR------RSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPP 256
P+EG RS G + P+ +RS + +P + L PP
Sbjct: 680 PSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPP 739
Query: 257 EYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPTRGASPPTPPV 316
P PP P P+ G P A + P G + + + + P P
Sbjct: 740 ALQAPTGVTPAPSSAPPG-TPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHT 798
Query: 317 SI-KSERLSP-APGGPGDFPKTFPYPLL--LARSLAEPLRPGPA 356
I ++ L P P P P P+P L L S +P P A
Sbjct: 799 HIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHA 842
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 69.3 bits (168), Expect = 5e-12
Identities = 75/224 (33%), Positives = 85/224 (37%), Gaps = 36/224 (16%)
Query: 126 PRPRLYPAAPAM-----PSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP 180
PR + P AP P P LP P P S PSPF A PP
Sbjct: 913 PREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHP-----PHLSGPSPFSMNANLPPPP 967
Query: 181 GLVHPLFSPS--HLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSL----YSGLQN 234
L PL S S H S PPPL L + + LP A P G L S++L S
Sbjct: 968 AL-KPLSSLSTHHPPSAHPPPLQLMPQSQ--PLPSSPAQPPG-LTQSQNLPPPPASHPPT 1023
Query: 235 PCSTATPGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPS 294
P PP PF+PGGPP PP P PP P PP + S
Sbjct: 1024 GLHQVAPQPPFAQHPFVPGGPPPI---TPPTCPSTSTPPA----GPGTSAQPPCSGAAAS 1076
Query: 295 GGRSLGEEGPPTRGASPPTPPVSIKSERLSPA--PGGPGDFPKT 336
GG G G+S P P V IK E L A P P P++
Sbjct: 1077 GGSIAG-------GSSCPLPTVQIKEEALDDAEEPESPPPPPRS 1113
Score = 44.3 bits (103), Expect = 2e-04
Identities = 68/257 (26%), Positives = 89/257 (34%), Gaps = 28/257 (10%)
Query: 123 PAL-PRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPG 181
PAL P+ P P PSP L PS A P P P + +AGP
Sbjct: 804 PALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPL- 862
Query: 182 LVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGG----LAGPRGGLN--TSRSLYSGLQNP 235
L HP P P LP + + P G A P L S+S Q P
Sbjct: 863 LQHP---------GPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPP 913
Query: 236 CSTATPGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQP--SRGDGPPAVSSQP 293
P PL P PP + P P PP L+ P + PP + +P
Sbjct: 914 REQPLPPAPLAMPHIKP--PPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKP 971
Query: 294 SGGRSLGEEGPPTRGASPPTPPVSIKSERLSPAPGGPGDFPKTF---PYPLLLARSLAEP 350
SL PP+ A PP + +S+ L +P P ++ P P +
Sbjct: 972 LS--SLSTHHPPS--AHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQ 1027
Query: 351 LRPGPALRRLPLADGWP 367
+ P P + P G P
Sbjct: 1028 VAPQPPFAQHPFVPGGP 1044
Score = 43.1 bits (100), Expect = 4e-04
Identities = 71/254 (27%), Positives = 89/254 (35%), Gaps = 52/254 (20%)
Query: 121 GDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP 180
G P LP P P+A A+P P G A A ++P P AP
Sbjct: 757 GTPQLPTPGPTPSATAVP---------------PQGSPTASQAPNQPQ--APTAPVPHTH 799
Query: 181 GLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTAT 240
P P S PPP P L G P + L+ Q P
Sbjct: 800 IQQAPALHPQRPPSPHPPPHPSP-HPPLQPLTGSAGQPSAPSHAQPPLHG--QGP----- 851
Query: 241 PGP-PLGSFPFL--PGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGP----PAVSSQ- 292
PGP L + P L PG P +GL PP + Q G P P S Q
Sbjct: 852 PGPHSLQAGPLLQHPGPPQPFGL-----------PPQASQGQAPLGTSPAAAYPHTSLQL 900
Query: 293 PSGGRSLGEEGPPTRGASPPTPPV--SIKSERLSPAPGGPGDFPKTFPYPLLLAR----S 346
P+ +L + PP PP P IK +P P P P+ +P L+ S
Sbjct: 901 PASQSALQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPA--PQAHKHPPHLSGPSPFS 958
Query: 347 LAEPLRPGPALRRL 360
+ L P PAL+ L
Sbjct: 959 MNANLPPPPALKPL 972
Score = 35.4 bits (80), Expect = 0.082
Identities = 50/162 (30%), Positives = 61/162 (37%), Gaps = 43/162 (26%)
Query: 125 LPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVH 184
+P+ + P++PA P LPPP PA P+ AP+ PP H
Sbjct: 991 MPQSQPLPSSPAQPPGLTQSQNLPPP-----------PASHPPTGLHQVAPQ--PPFAQH 1037
Query: 185 PLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCS--TATPG 242
P F P PPP+ PT S P AGP + Q PCS A+ G
Sbjct: 1038 P-FVPG-----GPPPITPPTCPSTSTPP---AGPG----------TSAQPPCSGAAASGG 1078
Query: 243 PPLG--SFPFLPGGPPEYGLGD------PPPPPGLLQP-PTL 275
G S P E L D PPPPP P PT+
Sbjct: 1079 SIAGGSSCPLPTVQIKEEALDDAEEPESPPPPPRSPSPEPTV 1120
Score = 32.7 bits (73), Expect = 0.53
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 240 TPGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDG--PPAVSS 291
T GP L FP+ PG P LG PP +L+ P P G PP +S+
Sbjct: 1460 TAGPHLARFPYPPGTLPNPLLGQPPHEHEMLRHPVFGTPYPRDLPGAIPPPMSA 1513
Score = 31.6 bits (70), Expect = 1.2
Identities = 47/190 (24%), Positives = 71/190 (37%), Gaps = 14/190 (7%)
Query: 75 PHESRTNTDILETLKRRGIGLDGPELEPDEG-PEEPGEK---FRRLAGEGGDPALPRPRL 130
PH + L L+R + L GP+L P+ P+ + R+A DP L R ++
Sbjct: 1361 PHPFASFHPGLNPLERERLALAGPQLRPEMSYPDRLAAERIHAERMASLTSDP-LARLQM 1419
Query: 131 YPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAG----PPG-LVHP 185
+ P ++ L DP G A P P A P PPG L +P
Sbjct: 1420 FNVTPHHHQHSHIHSHLHLHQQDPLHQGSAGPVHPLVDPL-TAGPHLARFPYPPGTLPNP 1478
Query: 186 LF-SPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPP 244
L P H P++ R DLPG + P + +++++ A
Sbjct: 1479 LLGQPPHEHEMLRHPVFGTPYPR--DLPGAIPPPMSAAHQLQAMHAQSAELQRLAMEQQW 1536
Query: 245 LGSFPFLPGG 254
L P + GG
Sbjct: 1537 LHGHPHMHGG 1546
Score = 30.4 bits (67), Expect = 2.6
Identities = 39/164 (23%), Positives = 56/164 (34%), Gaps = 11/164 (6%)
Query: 203 PTEGR------RSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPP 256
P+EG RS G + P+ +RS + +P + L PP
Sbjct: 680 PSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPP 739
Query: 257 EYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPTRGASPPTPPV 316
P PP P P+ G P A + P G + + + + P P
Sbjct: 740 ALQAPTGVTPAPSSAPPG-TPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHT 798
Query: 317 SI-KSERLSP-APGGPGDFPKTFPYPLL--LARSLAEPLRPGPA 356
I ++ L P P P P P+P L L S +P P A
Sbjct: 799 HIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHA 842
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 68.6 bits (166), Expect = 9e-12
Identities = 85/269 (31%), Positives = 102/269 (37%), Gaps = 61/269 (22%)
Query: 94 GLDGPELEPDEG--PEEPGEKFRRLAGEGGDPALP----------RPRLYPAAPAMPSPD 141
GL GP+ EP P PG K G GDP LP +P L P P P P
Sbjct: 1077 GLPGPKGEPGLPGYPGNPGIK-----GSVGDPGLPGLPGTPGAKGQPGL-PGFPGTPGPP 1130
Query: 142 VVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAP-------KAGPPGLVHPLFSPSHLTS 194
G PPG +P GE P P +P P + G PG P
Sbjct: 1131 GPKGISGPPG-NPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGF 1189
Query: 195 KTPPPLYLP-TEGRRSD--LPG-----GLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLG 246
P P LP G++ D LPG GL GP+G + G+Q P PGPP
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKG--EPGFHGFPGVQGP-----PGPPGS 1242
Query: 247 SFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPT 306
P L G G PP PGL P +GPP + P G GE+G P
Sbjct: 1243 PGPALEGPKGNPGPQGPPGRPGLPGP-----------EGPPGL---PGNGGIKGEKGNPG 1288
Query: 307 RGASPPTPPVSIKSERLSPA----PGGPG 331
+ P P +K ++ P PG PG
Sbjct: 1289 QPGLPGLP--GLKGDQGPPGLQGNPGRPG 1315
Score = 64.7 bits (156), Expect = 1e-10
Identities = 89/310 (28%), Positives = 106/310 (34%), Gaps = 53/310 (17%)
Query: 94 GLDGPELEPDEGPEEPGEK-FRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGC 152
G+ GP+ +P + +PG+ G GD LP P P +P + G+ PG
Sbjct: 647 GIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPG---IPGSKGEPGI 703
Query: 153 DPSGL-GEALPAQSRPSPFRPAAPKA-GPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSD 210
GL G P P P AP G GL P P K P LP
Sbjct: 704 PGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPG 763
Query: 211 LPG--GLAGPRGGLN-------TSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPEYGLG 261
LPG G GP+G R+ GL P P G P P G P G+
Sbjct: 764 LPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPG--PMGPPGLPGIGVQ 821
Query: 262 DPPPPPGLLQP---PTLAPWQPSRGD---------GPPAVSSQPSGGRSLGEEGPP---- 305
PP PPG+ P P L +GD GPP P + G GPP
Sbjct: 822 GPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPG 881
Query: 306 ------------TRG----ASPPTPPVSIKSERLSPAPGGPGD----FPKTFPYPLLLAR 345
T+G PP PP + S PG GD P P
Sbjct: 882 LPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKG 941
Query: 346 SLAEPLRPGP 355
S EP PGP
Sbjct: 942 SKGEPGLPGP 951
Score = 58.5 bits (140), Expect = 9e-09
Identities = 70/245 (28%), Positives = 89/245 (36%), Gaps = 57/245 (23%)
Query: 106 PEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQS 165
P +PG+ L+G+ G P P P+ P P P G + PPG L +
Sbjct: 987 PGDPGQP--GLSGQPGLPGPPGPKGNPGLPGQP------GLIGPPG-----LKGTIGDMG 1033
Query: 166 RPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPG-------GLAGP 218
P P GPPG PS + + P +G + D PG GL GP
Sbjct: 1034 FPGP----QGVEGPPG-------PSGVPGQPGSPGLPGQKGDKGD-PGISSIGLPGLPGP 1081
Query: 219 RG-----GLNTSRSLYSGLQNPCSTATPGPP-------LGSFPFLPGGPPEYGLGDPPPP 266
+G G + + + +P PG P L FP PG P G+ PP
Sbjct: 1082 KGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGN 1141
Query: 267 PGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPTRGASPPTPPVSIKSERLSPA 326
PGL P P G G P P GE+G P + P P K E P
Sbjct: 1142 PGLPGEP-----GPVGGGGHPGQPGPP------GEKGKPGQDGIP--GPAGQKGEPGQPG 1188
Query: 327 PGGPG 331
G PG
Sbjct: 1189 FGNPG 1193
Score = 58.2 bits (139), Expect = 1e-08
Identities = 78/276 (28%), Positives = 94/276 (34%), Gaps = 47/276 (17%)
Query: 92 GIGLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAA------------PAMPS 139
G+ D EL P PG G+ G P LP P+ P P +P
Sbjct: 555 GMKGDKGELGSPGAPGLPG--LPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPG 612
Query: 140 PDVVYGALPPPGCDPSG-LGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPP 198
G + PPG P G +GE + A G PG+ P P ++
Sbjct: 613 LPGNIGPMGPPGFGPPGPVGE--------KGIQGVAGNPGQPGIPGPKGDPGQTITQPGK 664
Query: 199 PLYLPTEGRRSD--LPG--GLAGPRG--GLNTSRSLYSGLQNPCSTATPGPP-------L 245
P GR D LPG GL G G G+ S+ G PGPP +
Sbjct: 665 PGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSK----GEPGIPGIGLPGPPGPKGFPGI 720
Query: 246 GSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAV-----SSQPSGGRSL- 299
P PG P GL PP PPG P + GPP + + P G R
Sbjct: 721 PGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFP 780
Query: 300 GEEGPPTRGASPPTP-PVSIKSERLSPAPGGPGDFP 334
G GPP R P P P P GP P
Sbjct: 781 GPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLP 816
Score = 57.4 bits (137), Expect = 2e-08
Identities = 84/265 (31%), Positives = 92/265 (34%), Gaps = 75/265 (28%)
Query: 94 GLDGPELEP-------DEG-PEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYG 145
G GPE P D+G P PG K G G P LP P P MP D G
Sbjct: 63 GFPGPEGPPGPRGQKGDDGIPGPPGPK-----GIRGPPGLPGFPGTPGLPGMPGHDGAPG 117
Query: 146 ALPPPGCDPSGLGEALPAQSRPSPFRPAAP-KAGPPGLVHPLFSP-SHLTSKTPPPLYLP 203
PGC+ + P SP P GPPG+ P S + S P P P
Sbjct: 118 PQGIPGCNGTKGERGFPG----SPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNP 173
Query: 204 TEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPEYGLGDP 263
G GP G GL P T PG P+G P GPP GL P
Sbjct: 174 ----------GYPGPPG--------IQGLPGP--TGIPG-PIG-----PPGPP--GLMGP 205
Query: 264 PPPPGL----------------------LQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGE 301
P PPGL LQ P P Q S P V Q G+
Sbjct: 206 PGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGD 265
Query: 302 EGPP----TRGASPPTPPVSIKSER 322
GPP RG PP PP K E+
Sbjct: 266 RGPPGPPGIRG--PPGPPGGEKGEK 288
Score = 55.5 bits (132), Expect = 8e-08
Identities = 70/220 (31%), Positives = 78/220 (35%), Gaps = 67/220 (30%)
Query: 94 GLDG-PELEPDEGPE----EPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALP 148
GL G P L+ D+GP PG L G GDP LP P P M P V G+
Sbjct: 1291 GLPGLPGLKGDQGPPGLQGNPGRP--GLNGMKGDPGLPG---VPGFPGMKGPSGVPGSAG 1345
Query: 149 PPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRR 208
P G +P +G GPPGL P + PP G +
Sbjct: 1346 PEG-EPGLIGPP-----------------GPPGLPGPSGQSIIIKGDAGPPGIPGQPGLK 1387
Query: 209 SDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPP----LGSF---------PFLPGGP 255
GL GP+G GL P T PG P L F P LPG P
Sbjct: 1388 -----GLPGPQGP--------QGLPGP--TGPPGDPGRNGLPGFDGAGGRKGDPGLPGQP 1432
Query: 256 PEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSG 295
GL PP P GL PP GPP SS G
Sbjct: 1433 GTRGLDGPPGPDGLQGPP-----------GPPGTSSVAHG 1461
Score = 52.0 bits (123), Expect = 8e-07
Identities = 85/290 (29%), Positives = 102/290 (35%), Gaps = 66/290 (22%)
Query: 94 GLDG-PELEPDEGPE-------EPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYG 145
GLDG P + D GP PG + G G P +P P P +P G
Sbjct: 790 GLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEK---G 846
Query: 146 ALPPPGCDPSGLGEALPAQSRPSPFRPAAP-KAGPPGLVHPLFSPSHLTSKTPPPLYLPT 204
PPG D G P R SP P AP GPPG SP L K + T
Sbjct: 847 DPGPPGLDVPG-----PPGERGSPGIPGAPGPIGPPG------SPG-LPGKAGASGFPGT 894
Query: 205 EGRRSDL-PGGLAGPRG--------GLNTSRSLYS--GLQNPCST-------ATPGPPLG 246
+G + P G GP G GL L GL P PGPP
Sbjct: 895 KGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGP 954
Query: 247 ---------------SFPFLPG--GPPEY-GLGDPPPPPGLLQPPTLAPWQPSRGD---- 284
P +PG GP Y GL P PGL P L +G+
Sbjct: 955 MDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLP 1014
Query: 285 GPPAVSSQPSGGRSLGEEG-PPTRGASPPTPPVSIKSERLSPA-PGGPGD 332
G P + P ++G+ G P +G P P + + SP PG GD
Sbjct: 1015 GQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGD 1064
Score = 51.2 bits (121), Expect = 1e-06
Identities = 89/338 (26%), Positives = 109/338 (32%), Gaps = 96/338 (28%)
Query: 94 GLDGPELEPD-EGPE-EPGEKFRR-LAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPP 150
GL GP P G + EPG L G G+P P P P +P P + G + PP
Sbjct: 141 GLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGP---PGIQGLPGPTGIPGPIGPP 197
Query: 151 GCDPSGLGEALPAQSRPSP-------FRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLP 203
G P GL P P F+ + G GL P P ++ + P +
Sbjct: 198 G--PPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRP---ID 252
Query: 204 TEGRRSD--LPG--------GLAGPRG------------------------GLNTSRSLY 229
E ++ D LPG G+ GP G G N +
Sbjct: 253 VEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIP 312
Query: 230 SGLQNPC---------------STATPGPP------------LGS-----FPFLPGGPPE 257
+P T PGPP +G P LPG E
Sbjct: 313 GLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGE 372
Query: 258 YGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPTRGASPPTPPVS 317
G PPGL PP A GPP P G+EGPP G S P PP
Sbjct: 373 RGFPGIQGPPGLPGPPGAAVM------GPPGPPGFPGERGQKGDEGPP--GISIPGPPGL 424
Query: 318 IKSERLSPAPGGPGDFPKTFPYPLLLARSLAEPLRPGP 355
PG PG P + + EP PGP
Sbjct: 425 DGQPGAPGLPGPPGPAGPHIP----PSDEICEPGPPGP 458
Score = 47.8 bits (112), Expect = 2e-05
Identities = 91/323 (28%), Positives = 110/323 (34%), Gaps = 73/323 (22%)
Query: 94 GLDGPELEPDEG--PEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPG 151
G G + EP + P + GE G+ G P LP YP P G PPG
Sbjct: 286 GEKGEQGEPGKRGKPGKDGEN-----GQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPG 340
Query: 152 CDPSGL-----GEALPAQSRPSPFRPAAPKA----------GPPGLVHPLFSPSHLTSKT 196
P GL G + + + P P GPPGL P P
Sbjct: 341 --PPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGP---PGAAVMGP 395
Query: 197 PPPLYLPTE-GRRSDL--PG-GLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLP 252
P P P E G++ D PG + GP G G P + PGPP + P +P
Sbjct: 396 PGPPGFPGERGQKGDEGPPGISIPGPPG--------LDG--QPGAPGLPGPPGPAGPHIP 445
Query: 253 GGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGD-----------------GPPAVSSQPSG 295
E PP PPG L Q +GD G P + P
Sbjct: 446 PS-DEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGP 504
Query: 296 GRSLGEEGPP-TRGASPPTPPVSIKSERLSPAPGGPGDFP---------KTFPYPLLLAR 345
SLG G +G + T P + + APG PG FP TFP
Sbjct: 505 PGSLGFPGQKGEKGQAGATGPKGLPG--IPGAPGAPG-FPGSKGEPGDILTFPGMKGDKG 561
Query: 346 SLAEPLRPG-PALRRLPLADGWP 367
L P PG P L P DG P
Sbjct: 562 ELGSPGAPGLPGLPGTPGQDGLP 584
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 67.8 bits (164), Expect = 1e-11
Identities = 74/231 (32%), Positives = 91/231 (39%), Gaps = 20/231 (8%)
Query: 126 PRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPA---APKAGPPGL 182
PRP PA P P LP P P+G + +PAQ S PA AP+ GP
Sbjct: 897 PRPNPTPAPPPPCFPVPPPQPLPTPYTYPAGAKQPIPAQHHFSSGIPAGFPAPRIGPQPQ 956
Query: 183 VHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPG 242
HP PS PP LP + P GL +S Y P P
Sbjct: 957 PHPQPHPSQAFGPQPPQQPLPLQH-----PHLFPPQAPGLLPPQSPYPYAPQPGVLGQPP 1011
Query: 243 PPLGS--FPFLPGGP-PEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRS- 298
PPL + +P P P + P P PG QPP P G PA S++P G ++
Sbjct: 1012 PPLHTQLYPGPAQDPLPAHSGALPFPSPGPPQPP-----HPPLAYG-PAPSTRPMGPQAA 1065
Query: 299 -LGEEGPPTRGASPPTPPVSIKSERLSPAPGGPGDFPKTFPYPLLLARSLA 348
L GP + G S P+P + + S SP PG P P L R A
Sbjct: 1066 PLTIRGPSSAGQSTPSPHL-VPSPAPSPGPGPVPPRPPAAEPPPCLRRGAA 1115
Score = 52.0 bits (123), Expect = 8e-07
Identities = 75/267 (28%), Positives = 86/267 (32%), Gaps = 56/267 (20%)
Query: 115 RLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPS---GLGEALPAQSRPSPFR 171
R G P P P LYPA P +V + P G S G+G
Sbjct: 806 RAPGPHAMPVAPGPALYPAPAYTPELGLVPRSSPQHGVVSSPYVGVG------------- 852
Query: 172 PAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSG 231
PA P AG P P FS L P + ++ +P A
Sbjct: 853 PAPPVAGLPSAPPPQFSGPELAMAVRPAT-TTVDSIQAPIPSHTA--------------- 896
Query: 232 LQNPCSTATPGPPLGSFPFLPGGPPEYGLGDP-PPPPGLLQPPTLAPWQPSRGDGPPAVS 290
P TP PP FP PP L P P G QP P Q G PA
Sbjct: 897 ---PRPNPTPAPPPPCFPV----PPPQPLPTPYTYPAGAKQP---IPAQHHFSSGIPAGF 946
Query: 291 SQPSGGRSLGEEGPP----TRGASPPTPPVSIKSERLSPAPGGPGDFPKTFPYPLLLARS 346
P G P G PP P+ ++ L P P PG P PYP
Sbjct: 947 PAPRIGPQPQPHPQPHPSQAFGPQPPQQPLPLQHPHLFP-PQAPGLLPPQSPYPYAPQPG 1005
Query: 347 -LAEP-------LRPGPALRRLPLADG 365
L +P L PGPA LP G
Sbjct: 1006 VLGQPPPPLHTQLYPGPAQDPLPAHSG 1032
Score = 31.6 bits (70), Expect = 1.2
Identities = 32/118 (27%), Positives = 41/118 (34%), Gaps = 33/118 (27%)
Query: 124 ALPRPRLYPAAPAMPSPDVVYGALP---PPGCD--------PSGLGEALPA--------- 163
ALP P P P P P + YG P P G PS G++ P+
Sbjct: 1033 ALPFPS--PGPPQPPHPPLAYGPAPSTRPMGPQAAPLTIRGPSSAGQSTPSPHLVPSPAP 1090
Query: 164 QSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGG 221
P P P P A PP + + + L S +P + GG P GG
Sbjct: 1091 SPGPGPVPPRPPAAEPPPCLRRGAAAADLLSSSPESQH-----------GGTQSPGGG 1137
Score = 31.6 bits (70), Expect = 1.2
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 124 ALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPS--PFRPAAPKAGPP 180
+LP P P P P+ + P P P L LP +P P P AP +GPP
Sbjct: 1519 SLPGPAEPPGLPPASLPE----STPIPSSSPPPLSSPLPEAPQPKEEPPVPEAPSSGPP 1573
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 66.6 bits (161), Expect = 3e-11
Identities = 86/269 (31%), Positives = 103/269 (38%), Gaps = 55/269 (20%)
Query: 94 GLDGPELEPDEG--PEEPGEKFRRLAGEGGDPALP----------RPRLYPAAPAMPSPD 141
GL GP+ EP P PG K G GDP LP +P L P P P P
Sbjct: 1077 GLPGPKGEPGLPGYPGNPGIK-----GSVGDPGLPGLPGTPGAKGQPGL-PGFPGTPGPP 1130
Query: 142 VVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAP-------KAGPPGLVHPLFSPSHLTS 194
G PPG +P GE P P +P P + G PG P
Sbjct: 1131 GPKGISGPPG-NPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGF 1189
Query: 195 KTPPPLYLP-TEGRRSD--LPG-----GLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLG 246
P P LP G++ D LPG GL GP+G + G+Q P PGPP
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKG--EPGFHGFPGVQGP-----PGPPGS 1242
Query: 247 SFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPT 306
P L G G PP PG PT P +GPP + P G GE+G P
Sbjct: 1243 PGPALEGPKGNPGPQGPPGRPG----PTGFQGLPG-PEGPPGL---PGNGGIKGEKGNPG 1294
Query: 307 RGASPPTPPVSIKSERLSPA----PGGPG 331
+ P P +K ++ P PG PG
Sbjct: 1295 QPGLPGLP--GLKGDQGPPGLQGNPGRPG 1321
Score = 64.7 bits (156), Expect = 1e-10
Identities = 89/310 (28%), Positives = 106/310 (34%), Gaps = 53/310 (17%)
Query: 94 GLDGPELEPDEGPEEPGEK-FRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGC 152
G+ GP+ +P + +PG+ G GD LP P P +P + G+ PG
Sbjct: 647 GIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPG---IPGSKGEPGI 703
Query: 153 DPSGL-GEALPAQSRPSPFRPAAPKA-GPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSD 210
GL G P P P AP G GL P P K P LP
Sbjct: 704 PGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPG 763
Query: 211 LPG--GLAGPRGGLN-------TSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPEYGLG 261
LPG G GP+G R+ GL P P G P P G P G+
Sbjct: 764 LPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPG--PMGPPGLPGIGVQ 821
Query: 262 DPPPPPGLLQP---PTLAPWQPSRGD---------GPPAVSSQPSGGRSLGEEGPP---- 305
PP PPG+ P P L +GD GPP P + G GPP
Sbjct: 822 GPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPG 881
Query: 306 ------------TRG----ASPPTPPVSIKSERLSPAPGGPGD----FPKTFPYPLLLAR 345
T+G PP PP + S PG GD P P
Sbjct: 882 LPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKG 941
Query: 346 SLAEPLRPGP 355
S EP PGP
Sbjct: 942 SKGEPGLPGP 951
Score = 58.5 bits (140), Expect = 9e-09
Identities = 70/245 (28%), Positives = 89/245 (36%), Gaps = 57/245 (23%)
Query: 106 PEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQS 165
P +PG+ L+G+ G P P P+ P P P G + PPG L +
Sbjct: 987 PGDPGQP--GLSGQPGLPGPPGPKGNPGLPGQP------GLIGPPG-----LKGTIGDMG 1033
Query: 166 RPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPG-------GLAGP 218
P P GPPG PS + + P +G + D PG GL GP
Sbjct: 1034 FPGP----QGVEGPPG-------PSGVPGQPGSPGLPGQKGDKGD-PGISSIGLPGLPGP 1081
Query: 219 RG-----GLNTSRSLYSGLQNPCSTATPGPP-------LGSFPFLPGGPPEYGLGDPPPP 266
+G G + + + +P PG P L FP PG P G+ PP
Sbjct: 1082 KGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGN 1141
Query: 267 PGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPTRGASPPTPPVSIKSERLSPA 326
PGL P P G G P P GE+G P + P P K E P
Sbjct: 1142 PGLPGEP-----GPVGGGGHPGQPGPP------GEKGKPGQDGIP--GPAGQKGEPGQPG 1188
Query: 327 PGGPG 331
G PG
Sbjct: 1189 FGNPG 1193
Score = 58.2 bits (139), Expect = 1e-08
Identities = 78/276 (28%), Positives = 94/276 (34%), Gaps = 47/276 (17%)
Query: 92 GIGLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAA------------PAMPS 139
G+ D EL P PG G+ G P LP P+ P P +P
Sbjct: 555 GMKGDKGELGSPGAPGLPG--LPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPG 612
Query: 140 PDVVYGALPPPGCDPSG-LGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPP 198
G + PPG P G +GE + A G PG+ P P ++
Sbjct: 613 LPGNIGPMGPPGFGPPGPVGE--------KGIQGVAGNPGQPGIPGPKGDPGQTITQPGK 664
Query: 199 PLYLPTEGRRSD--LPG--GLAGPRG--GLNTSRSLYSGLQNPCSTATPGPP-------L 245
P GR D LPG GL G G G+ S+ G PGPP +
Sbjct: 665 PGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSK----GEPGIPGIGLPGPPGPKGFPGI 720
Query: 246 GSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAV-----SSQPSGGRSL- 299
P PG P GL PP PPG P + GPP + + P G R
Sbjct: 721 PGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFP 780
Query: 300 GEEGPPTRGASPPTP-PVSIKSERLSPAPGGPGDFP 334
G GPP R P P P P GP P
Sbjct: 781 GPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLP 816
Score = 57.4 bits (137), Expect = 2e-08
Identities = 84/265 (31%), Positives = 92/265 (34%), Gaps = 75/265 (28%)
Query: 94 GLDGPELEP-------DEG-PEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYG 145
G GPE P D+G P PG K G G P LP P P MP D G
Sbjct: 63 GFPGPEGPPGPRGQKGDDGIPGPPGPK-----GIRGPPGLPGFPGTPGLPGMPGHDGAPG 117
Query: 146 ALPPPGCDPSGLGEALPAQSRPSPFRPAAP-KAGPPGLVHPLFSP-SHLTSKTPPPLYLP 203
PGC+ + P SP P GPPG+ P S + S P P P
Sbjct: 118 PQGIPGCNGTKGERGFPG----SPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNP 173
Query: 204 TEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPEYGLGDP 263
G GP G GL P T PG P+G P GPP GL P
Sbjct: 174 ----------GYPGPPG--------IQGLPGP--TGIPG-PIG-----PPGPP--GLMGP 205
Query: 264 PPPPGL----------------------LQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGE 301
P PPGL LQ P P Q S P V Q G+
Sbjct: 206 PGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGD 265
Query: 302 EGPP----TRGASPPTPPVSIKSER 322
GPP RG PP PP K E+
Sbjct: 266 RGPPGPPGIRG--PPGPPGGEKGEK 288
Score = 57.4 bits (137), Expect = 2e-08
Identities = 72/248 (29%), Positives = 88/248 (35%), Gaps = 68/248 (27%)
Query: 92 GIGLDGPELEPDEGPEEPGEK-----FRRLAGEGGDPALPR------PRLYPAAPAMPSP 140
G L+GP+ P GP+ P + F+ L G G P LP + P P +P
Sbjct: 1244 GPALEGPKGNP--GPQGPPGRPGPTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGL 1301
Query: 141 DVVYGALPPPGC--------------DPSGLG-EALPAQSRPSPFRPAAPKAGPPGLVHP 185
+ G PPG DP G P PS +A G PGL+ P
Sbjct: 1302 PGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGP 1361
Query: 186 LFSPSHLTSKTPPPLYLPTEGRRSDLPG-----GLAGPRGGLNTSRSLYSGLQNPCSTAT 240
P L + + + + +PG GL GP+G GL P T
Sbjct: 1362 P-GPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGP--------QGLPGP--TGP 1410
Query: 241 PGPP----LGSF---------PFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPP 287
PG P L F P LPG P GL PP P GL PP GPP
Sbjct: 1411 PGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPP-----------GPP 1459
Query: 288 AVSSQPSG 295
SS G
Sbjct: 1460 GTSSVAHG 1467
Score = 52.0 bits (123), Expect = 8e-07
Identities = 85/290 (29%), Positives = 102/290 (35%), Gaps = 66/290 (22%)
Query: 94 GLDG-PELEPDEGPE-------EPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYG 145
GLDG P + D GP PG + G G P +P P P +P G
Sbjct: 790 GLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEK---G 846
Query: 146 ALPPPGCDPSGLGEALPAQSRPSPFRPAAP-KAGPPGLVHPLFSPSHLTSKTPPPLYLPT 204
PPG D G P R SP P AP GPPG SP L K + T
Sbjct: 847 DPGPPGLDVPG-----PPGERGSPGIPGAPGPIGPPG------SPG-LPGKAGASGFPGT 894
Query: 205 EGRRSDL-PGGLAGPRG--------GLNTSRSLYS--GLQNPCST-------ATPGPPLG 246
+G + P G GP G GL L GL P PGPP
Sbjct: 895 KGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGP 954
Query: 247 ---------------SFPFLPG--GPPEY-GLGDPPPPPGLLQPPTLAPWQPSRGD---- 284
P +PG GP Y GL P PGL P L +G+
Sbjct: 955 MDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLP 1014
Query: 285 GPPAVSSQPSGGRSLGEEG-PPTRGASPPTPPVSIKSERLSPA-PGGPGD 332
G P + P ++G+ G P +G P P + + SP PG GD
Sbjct: 1015 GQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGD 1064
Score = 51.2 bits (121), Expect = 1e-06
Identities = 89/338 (26%), Positives = 109/338 (32%), Gaps = 96/338 (28%)
Query: 94 GLDGPELEPD-EGPE-EPGEKFRR-LAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPP 150
GL GP P G + EPG L G G+P P P P +P P + G + PP
Sbjct: 141 GLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGP---PGIQGLPGPTGIPGPIGPP 197
Query: 151 GCDPSGLGEALPAQSRPSP-------FRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLP 203
G P GL P P F+ + G GL P P ++ + P +
Sbjct: 198 G--PPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRP---ID 252
Query: 204 TEGRRSD--LPG--------GLAGPRG------------------------GLNTSRSLY 229
E ++ D LPG G+ GP G G N +
Sbjct: 253 VEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIP 312
Query: 230 SGLQNPC---------------STATPGPP------------LGS-----FPFLPGGPPE 257
+P T PGPP +G P LPG E
Sbjct: 313 GLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGE 372
Query: 258 YGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPTRGASPPTPPVS 317
G PPGL PP A GPP P G+EGPP G S P PP
Sbjct: 373 RGFPGIQGPPGLPGPPGAAVM------GPPGPPGFPGERGQKGDEGPP--GISIPGPPGL 424
Query: 318 IKSERLSPAPGGPGDFPKTFPYPLLLARSLAEPLRPGP 355
PG PG P + + EP PGP
Sbjct: 425 DGQPGAPGLPGPPGPAGPHIP----PSDEICEPGPPGP 458
Score = 47.8 bits (112), Expect = 2e-05
Identities = 91/323 (28%), Positives = 110/323 (34%), Gaps = 73/323 (22%)
Query: 94 GLDGPELEPDEG--PEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPG 151
G G + EP + P + GE G+ G P LP YP P G PPG
Sbjct: 286 GEKGEQGEPGKRGKPGKDGEN-----GQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPG 340
Query: 152 CDPSGL-----GEALPAQSRPSPFRPAAPKA----------GPPGLVHPLFSPSHLTSKT 196
P GL G + + + P P GPPGL P P
Sbjct: 341 --PPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGP---PGAAVMGP 395
Query: 197 PPPLYLPTE-GRRSDL--PG-GLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLP 252
P P P E G++ D PG + GP G G P + PGPP + P +P
Sbjct: 396 PGPPGFPGERGQKGDEGPPGISIPGPPG--------LDG--QPGAPGLPGPPGPAGPHIP 445
Query: 253 GGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGD-----------------GPPAVSSQPSG 295
E PP PPG L Q +GD G P + P
Sbjct: 446 PS-DEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGP 504
Query: 296 GRSLGEEGPP-TRGASPPTPPVSIKSERLSPAPGGPGDFP---------KTFPYPLLLAR 345
SLG G +G + T P + + APG PG FP TFP
Sbjct: 505 PGSLGFPGQKGEKGQAGATGPKGLPG--IPGAPGAPG-FPGSKGEPGDILTFPGMKGDKG 561
Query: 346 SLAEPLRPG-PALRRLPLADGWP 367
L P PG P L P DG P
Sbjct: 562 ELGSPGAPGLPGLPGTPGQDGLP 584
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 65.9 bits (159), Expect = 6e-11
Identities = 84/269 (31%), Positives = 101/269 (37%), Gaps = 58/269 (21%)
Query: 94 GLDGPELEPDEG--PEEPGEKFRRLAGEGGDPALP----------RPRLYPAAPAMPSPD 141
GL GP+ EP P PG K G GDP LP +P L P P P P
Sbjct: 1077 GLPGPKGEPGLPGYPGNPGIK-----GSVGDPGLPGLPGTPGAKGQPGL-PGFPGTPGPP 1130
Query: 142 VVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAP-------KAGPPGLVHPLFSPSHLTS 194
G PPG +P GE P P +P P + G PG P
Sbjct: 1131 GPKGISGPPG-NPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGF 1189
Query: 195 KTPPPLYLP-TEGRRSD--LPG-----GLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLG 246
P P LP G++ D LPG GL GP+G + G+Q P PGPP
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKG--EPGFHGFPGVQGP-----PGPPGS 1242
Query: 247 SFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPT 306
P L G G PP PG P +GPP + P G GE+G P
Sbjct: 1243 PGPALEGPKGNPGPQGPPGRPGFQGLPG--------PEGPPGL---PGNGGIKGEKGNPG 1291
Query: 307 RGASPPTPPVSIKSERLSPA----PGGPG 331
+ P P +K ++ P PG PG
Sbjct: 1292 QPGLPGLP--GLKGDQGPPGLQGNPGRPG 1318
Score = 64.7 bits (156), Expect = 1e-10
Identities = 89/310 (28%), Positives = 106/310 (34%), Gaps = 53/310 (17%)
Query: 94 GLDGPELEPDEGPEEPGEK-FRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGC 152
G+ GP+ +P + +PG+ G GD LP P P +P + G+ PG
Sbjct: 647 GIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPG---IPGSKGEPGI 703
Query: 153 DPSGL-GEALPAQSRPSPFRPAAPKA-GPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSD 210
GL G P P P AP G GL P P K P LP
Sbjct: 704 PGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPG 763
Query: 211 LPG--GLAGPRGGLN-------TSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPEYGLG 261
LPG G GP+G R+ GL P P G P P G P G+
Sbjct: 764 LPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPG--PMGPPGLPGIGVQ 821
Query: 262 DPPPPPGLLQP---PTLAPWQPSRGD---------GPPAVSSQPSGGRSLGEEGPP---- 305
PP PPG+ P P L +GD GPP P + G GPP
Sbjct: 822 GPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPG 881
Query: 306 ------------TRG----ASPPTPPVSIKSERLSPAPGGPGD----FPKTFPYPLLLAR 345
T+G PP PP + S PG GD P P
Sbjct: 882 LPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKG 941
Query: 346 SLAEPLRPGP 355
S EP PGP
Sbjct: 942 SKGEPGLPGP 951
Score = 58.5 bits (140), Expect = 9e-09
Identities = 70/245 (28%), Positives = 89/245 (36%), Gaps = 57/245 (23%)
Query: 106 PEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQS 165
P +PG+ L+G+ G P P P+ P P P G + PPG L +
Sbjct: 987 PGDPGQP--GLSGQPGLPGPPGPKGNPGLPGQP------GLIGPPG-----LKGTIGDMG 1033
Query: 166 RPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPG-------GLAGP 218
P P GPPG PS + + P +G + D PG GL GP
Sbjct: 1034 FPGP----QGVEGPPG-------PSGVPGQPGSPGLPGQKGDKGD-PGISSIGLPGLPGP 1081
Query: 219 RG-----GLNTSRSLYSGLQNPCSTATPGPP-------LGSFPFLPGGPPEYGLGDPPPP 266
+G G + + + +P PG P L FP PG P G+ PP
Sbjct: 1082 KGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGN 1141
Query: 267 PGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPTRGASPPTPPVSIKSERLSPA 326
PGL P P G G P P GE+G P + P P K E P
Sbjct: 1142 PGLPGEP-----GPVGGGGHPGQPGPP------GEKGKPGQDGIP--GPAGQKGEPGQPG 1188
Query: 327 PGGPG 331
G PG
Sbjct: 1189 FGNPG 1193
Score = 58.5 bits (140), Expect = 9e-09
Identities = 72/245 (29%), Positives = 88/245 (35%), Gaps = 65/245 (26%)
Query: 92 GIGLDGPELEPDEGPEEPGEK--FRRLAGEGGDPALPR------PRLYPAAPAMPSPDVV 143
G L+GP+ P GP+ P + F+ L G G P LP + P P +P +
Sbjct: 1244 GPALEGPKGNP--GPQGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGL 1301
Query: 144 YGALPPPGC--------------DPSGLG-EALPAQSRPSPFRPAAPKAGPPGLVHPLFS 188
G PPG DP G P PS +A G PGL+ P
Sbjct: 1302 KGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPP-G 1360
Query: 189 PSHLTSKTPPPLYLPTEGRRSDLPG-----GLAGPRGGLNTSRSLYSGLQNPCSTATPGP 243
P L + + + + +PG GL GP+G GL P T PG
Sbjct: 1361 PPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGP--------QGLPGP--TGPPGD 1410
Query: 244 P----LGSF---------PFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVS 290
P L F P LPG P GL PP P GL PP GPP S
Sbjct: 1411 PGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPP-----------GPPGTS 1459
Query: 291 SQPSG 295
S G
Sbjct: 1460 SVAHG 1464
Score = 58.2 bits (139), Expect = 1e-08
Identities = 78/276 (28%), Positives = 94/276 (34%), Gaps = 47/276 (17%)
Query: 92 GIGLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAA------------PAMPS 139
G+ D EL P PG G+ G P LP P+ P P +P
Sbjct: 555 GMKGDKGELGSPGAPGLPG--LPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPG 612
Query: 140 PDVVYGALPPPGCDPSG-LGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPP 198
G + PPG P G +GE + A G PG+ P P ++
Sbjct: 613 LPGNIGPMGPPGFGPPGPVGE--------KGIQGVAGNPGQPGIPGPKGDPGQTITQPGK 664
Query: 199 PLYLPTEGRRSD--LPG--GLAGPRG--GLNTSRSLYSGLQNPCSTATPGPP-------L 245
P GR D LPG GL G G G+ S+ G PGPP +
Sbjct: 665 PGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSK----GEPGIPGIGLPGPPGPKGFPGI 720
Query: 246 GSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAV-----SSQPSGGRSL- 299
P PG P GL PP PPG P + GPP + + P G R
Sbjct: 721 PGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFP 780
Query: 300 GEEGPPTRGASPPTP-PVSIKSERLSPAPGGPGDFP 334
G GPP R P P P P GP P
Sbjct: 781 GPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLP 816
Score = 57.4 bits (137), Expect = 2e-08
Identities = 84/265 (31%), Positives = 92/265 (34%), Gaps = 75/265 (28%)
Query: 94 GLDGPELEP-------DEG-PEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYG 145
G GPE P D+G P PG K G G P LP P P MP D G
Sbjct: 63 GFPGPEGPPGPRGQKGDDGIPGPPGPK-----GIRGPPGLPGFPGTPGLPGMPGHDGAPG 117
Query: 146 ALPPPGCDPSGLGEALPAQSRPSPFRPAAP-KAGPPGLVHPLFSP-SHLTSKTPPPLYLP 203
PGC+ + P SP P GPPG+ P S + S P P P
Sbjct: 118 PQGIPGCNGTKGERGFPG----SPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNP 173
Query: 204 TEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPEYGLGDP 263
G GP G GL P T PG P+G P GPP GL P
Sbjct: 174 ----------GYPGPPG--------IQGLPGP--TGIPG-PIG-----PPGPP--GLMGP 205
Query: 264 PPPPGL----------------------LQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGE 301
P PPGL LQ P P Q S P V Q G+
Sbjct: 206 PGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGD 265
Query: 302 EGPP----TRGASPPTPPVSIKSER 322
GPP RG PP PP K E+
Sbjct: 266 RGPPGPPGIRG--PPGPPGGEKGEK 288
Score = 52.0 bits (123), Expect = 8e-07
Identities = 85/290 (29%), Positives = 102/290 (35%), Gaps = 66/290 (22%)
Query: 94 GLDG-PELEPDEGPE-------EPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYG 145
GLDG P + D GP PG + G G P +P P P +P G
Sbjct: 790 GLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEK---G 846
Query: 146 ALPPPGCDPSGLGEALPAQSRPSPFRPAAP-KAGPPGLVHPLFSPSHLTSKTPPPLYLPT 204
PPG D G P R SP P AP GPPG SP L K + T
Sbjct: 847 DPGPPGLDVPG-----PPGERGSPGIPGAPGPIGPPG------SPG-LPGKAGASGFPGT 894
Query: 205 EGRRSDL-PGGLAGPRG--------GLNTSRSLYS--GLQNPCST-------ATPGPPLG 246
+G + P G GP G GL L GL P PGPP
Sbjct: 895 KGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGP 954
Query: 247 ---------------SFPFLPG--GPPEY-GLGDPPPPPGLLQPPTLAPWQPSRGD---- 284
P +PG GP Y GL P PGL P L +G+
Sbjct: 955 MDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLP 1014
Query: 285 GPPAVSSQPSGGRSLGEEG-PPTRGASPPTPPVSIKSERLSPA-PGGPGD 332
G P + P ++G+ G P +G P P + + SP PG GD
Sbjct: 1015 GQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGD 1064
Score = 51.2 bits (121), Expect = 1e-06
Identities = 89/338 (26%), Positives = 109/338 (32%), Gaps = 96/338 (28%)
Query: 94 GLDGPELEPD-EGPE-EPGEKFRR-LAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPP 150
GL GP P G + EPG L G G+P P P P +P P + G + PP
Sbjct: 141 GLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGP---PGIQGLPGPTGIPGPIGPP 197
Query: 151 GCDPSGLGEALPAQSRPSP-------FRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLP 203
G P GL P P F+ + G GL P P ++ + P +
Sbjct: 198 G--PPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRP---ID 252
Query: 204 TEGRRSD--LPG--------GLAGPRG------------------------GLNTSRSLY 229
E ++ D LPG G+ GP G G N +
Sbjct: 253 VEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIP 312
Query: 230 SGLQNPC---------------STATPGPP------------LGS-----FPFLPGGPPE 257
+P T PGPP +G P LPG E
Sbjct: 313 GLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGE 372
Query: 258 YGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPTRGASPPTPPVS 317
G PPGL PP A GPP P G+EGPP G S P PP
Sbjct: 373 RGFPGIQGPPGLPGPPGAAVM------GPPGPPGFPGERGQKGDEGPP--GISIPGPPGL 424
Query: 318 IKSERLSPAPGGPGDFPKTFPYPLLLARSLAEPLRPGP 355
PG PG P + + EP PGP
Sbjct: 425 DGQPGAPGLPGPPGPAGPHIP----PSDEICEPGPPGP 458
Score = 47.8 bits (112), Expect = 2e-05
Identities = 91/323 (28%), Positives = 110/323 (34%), Gaps = 73/323 (22%)
Query: 94 GLDGPELEPDEG--PEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPG 151
G G + EP + P + GE G+ G P LP YP P G PPG
Sbjct: 286 GEKGEQGEPGKRGKPGKDGEN-----GQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPG 340
Query: 152 CDPSGL-----GEALPAQSRPSPFRPAAPKA----------GPPGLVHPLFSPSHLTSKT 196
P GL G + + + P P GPPGL P P
Sbjct: 341 --PPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPGLPGP---PGAAVMGP 395
Query: 197 PPPLYLPTE-GRRSDL--PG-GLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLP 252
P P P E G++ D PG + GP G G P + PGPP + P +P
Sbjct: 396 PGPPGFPGERGQKGDEGPPGISIPGPPG--------LDG--QPGAPGLPGPPGPAGPHIP 445
Query: 253 GGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGD-----------------GPPAVSSQPSG 295
E PP PPG L Q +GD G P + P
Sbjct: 446 PS-DEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGP 504
Query: 296 GRSLGEEGPP-TRGASPPTPPVSIKSERLSPAPGGPGDFP---------KTFPYPLLLAR 345
SLG G +G + T P + + APG PG FP TFP
Sbjct: 505 PGSLGFPGQKGEKGQAGATGPKGLPG--IPGAPGAPG-FPGSKGEPGDILTFPGMKGDKG 561
Query: 346 SLAEPLRPG-PALRRLPLADGWP 367
L P PG P L P DG P
Sbjct: 562 ELGSPGAPGLPGLPGTPGQDGLP 584
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 65.9 bits (159), Expect = 6e-11
Identities = 59/189 (31%), Positives = 84/189 (44%), Gaps = 22/189 (11%)
Query: 148 PPPGCDPSGLGEALPAQSRPSPFRPAAPK--AGPPGL-VHPLFSPSHLTSKTPP-----P 199
PPP P G A+ AQ +P+P P+ P+ A PP L +H + + + TPP P
Sbjct: 712 PPPPPPPPTPGSAM-AQLKPAPCAPSLPQFSAPPPPLKIHQVQHITQVAPPTPPPPPPIP 770
Query: 200 LYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPEYG 259
LP + L + P TS + + + TP PP+ P P Y
Sbjct: 771 APLPPQAPPKPLV-TIPAP-----TSTKTVAPVVTQAAPPTPTPPVPPAKKQPAFPASYI 824
Query: 260 LGDPPPPPGLLQPPTLAPWQPSRGDGPPA-VSSQPSGGRSLGEEGPPTRGASPPTPPVSI 318
PP PP + PPTL Q PP+ +S PS + + + PP PPTPP ++
Sbjct: 825 PPSPPTPPVPVPPPTLPKQQSFCAKPPPSPLSPVPSVVKQIASQFPP-----PPTPP-AM 878
Query: 319 KSERLSPAP 327
+S+ L P P
Sbjct: 879 ESQPLKPVP 887
Score = 48.9 bits (115), Expect = 7e-06
Identities = 56/205 (27%), Positives = 72/205 (35%), Gaps = 36/205 (17%)
Query: 123 PALPRPRLYPAAPAM---PSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGP 179
P +P + PA PA PSP +PPP LP Q P +P +
Sbjct: 808 PPVPPAKKQPAFPASYIPPSPPTPPVPVPPP---------TLPKQQSFCAKPPPSPLSPV 858
Query: 180 PGLVHPLFSPSHLTSKTPPPLYLPTEGRR--SDLPGGLAGPRGGLNTSRSLYSGLQNPCS 237
P +V + S+ PPP P + +P +A ++ + P S
Sbjct: 859 PSVV------KQIASQFPPPPTPPAMESQPLKPVPANVAPQSPPAVKAKPKWQ----PSS 908
Query: 238 TATPGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGR 297
P P P PPE L PPPPP P AP P P S G+
Sbjct: 909 IPVPSPDF------PPPPPESSLVFPPPPPS----PVPAPPPPPPPTASPTPDKSGSPGK 958
Query: 298 SLGEEGPPTRGASPPTPP--VSIKS 320
+ P PPTP SIKS
Sbjct: 959 KTSKTSSPGGKKPPPTPQRNSSIKS 983
Score = 45.8 bits (107), Expect = 6e-05
Identities = 42/131 (32%), Positives = 52/131 (39%), Gaps = 14/131 (10%)
Query: 235 PCSTATPGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPS 294
P + + P PPL P P PP PPPPP PP + PS G P +
Sbjct: 618 PYTASQPSPPLPPPP--PPPPP------PPPPPPPPPPPLPSQSAPSAGSAAPMFVKYST 669
Query: 295 GGRSLGEEGPPTRGASPPTPPV----SIKSERLSPAPGGPGDFPKTFPYPLLLARSLAEP 350
R PPTPPV S+K + L P P G P P P ++A+
Sbjct: 670 ITRLQNASQHSGALFKPPTPPVMQSQSVKPQILVP-PNGVVPPPPPPPPPPTPGSAMAQ- 727
Query: 351 LRPGPALRRLP 361
L+P P LP
Sbjct: 728 LKPAPCAPSLP 738
Score = 42.4 bits (98), Expect = 7e-04
Identities = 59/257 (22%), Positives = 78/257 (30%), Gaps = 32/257 (12%)
Query: 98 PELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYP--------------AAPAMPSPDVV 143
P P P PG +L P+LP+ P A P P P +
Sbjct: 710 PPPPPPPPPPTPGSAMAQLKPAPCAPSLPQFSAPPPPLKIHQVQHITQVAPPTPPPPPPI 769
Query: 144 YGALPPPGCD--------PSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSK 195
LPP P+ P ++ +P P P PP P F S++
Sbjct: 770 PAPLPPQAPPKPLVTIPAPTSTKTVAPVVTQAAPPTPTPPV--PPAKKQPAFPASYIPPS 827
Query: 196 TP-PPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGG 254
P PP+ +P P L+ S+ + + P + S P P
Sbjct: 828 PPTPPVPVPPPTLPKQQSFCAKPPPSPLSPVPSVVKQIASQFPPPPTPPAMESQPLKPV- 886
Query: 255 PPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPTRGASPPTP 314
P P PP + P WQPS P P SL PP P P
Sbjct: 887 PANVA---PQSPPAVKAKPK---WQPSSIPVPSPDFPPPPPESSLVFPPPPPSPVPAPPP 940
Query: 315 PVSIKSERLSPAPGGPG 331
P + G PG
Sbjct: 941 PPPPTASPTPDKSGSPG 957
Score = 40.4 bits (93), Expect = 0.003
Identities = 61/224 (27%), Positives = 79/224 (35%), Gaps = 50/224 (22%)
Query: 137 MPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKT 196
M S + Y +L PP + A S+PSP P P PP P
Sbjct: 595 MESMNRPYTSLVPPLSPQPKIVTPYTA-SQPSPPLPPPPPPPPPPPPPP----------P 643
Query: 197 PPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTA-----TPGPPLGSFPFL 251
PPP LP++ S AG + S + LQN + P PP+ +
Sbjct: 644 PPPPPLPSQSAPS------AGSAAPMFVKYSTITRLQNASQHSGALFKPPTPPVMQSQSV 697
Query: 252 PGG---PPEYGLGDPPPPP---------GLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSL 299
PP + PPPPP L+P AP P PP + + +
Sbjct: 698 KPQILVPPNGVVPPPPPPPPPPTPGSAMAQLKPAPCAPSLPQFSAPPPPLKIHQV--QHI 755
Query: 300 GEEGPPTRGASPPTPPVSIKSERLSPAPGGPGDFPK---TFPYP 340
+ PPT PP PP+ PAP P PK T P P
Sbjct: 756 TQVAPPT---PPPPPPI--------PAPLPPQAPPKPLVTIPAP 788
Score = 38.9 bits (89), Expect = 0.007
Identities = 59/214 (27%), Positives = 71/214 (33%), Gaps = 28/214 (13%)
Query: 135 PAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP-----------GLV 183
P PSP PPP P+ P + P K P G
Sbjct: 929 PPPPSPVPAPPPPPPPTASPTPDKSGSPGKKTSKTSSPGGKKPPPTPQRNSSIKSSSGAE 988
Query: 184 HP---LFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGG-LNTSRSLYSG-LQNPCST 238
HP S L SK PP + + + LP A P+ G LN S G LQ C +
Sbjct: 989 HPEPKRPSVDSLVSKFTPPAESGSPSKET-LPPPAAPPKPGKLNLSGVNLPGVLQQGCVS 1047
Query: 239 ATP----GPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGP--PAVSSQ 292
A G S P P + PPP L PP P S P V+ Q
Sbjct: 1048 AKAPVLSGRGKDSVVEFPSPPSDSDFPPPPPETELPLPPIEIPAVFSGNTSPKVAVVNPQ 1107
Query: 293 PSGGRSLGEEGPPTRGASPPTPPVSIKSERLSPA 326
P + + A PPT P S RL+ A
Sbjct: 1108 PQQWSKMS-----VKKAPPPTRPKRNDSTRLTQA 1136
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 65.9 bits (159), Expect = 6e-11
Identities = 66/240 (27%), Positives = 79/240 (32%), Gaps = 34/240 (14%)
Query: 121 GDPALPRPRLYPAAPAMPSPDVVYG---------ALPPPGCDPSGLGEALPAQSRPSPFR 171
G PA P P+ P PA P G PP PS G + +P
Sbjct: 952 GGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTP 1011
Query: 172 PAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPT-EGRRSDLPGGLAGPRGGLNTSRSLYS 230
PA P G P +P + TPP P+ +G + P P T S
Sbjct: 1012 PAVTPPSPKG--SPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKG 1069
Query: 231 GLQNPCSTATPGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRG------- 283
G P P PP + P GGP P P G PP P P G
Sbjct: 1070 GPATPSLKGAPTPPAATPPSPKGGPA------TPSPKGAPMPPAATPPSPKGGLATPPHK 1123
Query: 284 ---DGPPAVSSQPSGGRSLGEEGPPTRGA--SPPTPPVSIKSERLSPAPGGPGDFPKTFP 338
P A P GG + PP +GA +P P S K +P P G P P
Sbjct: 1124 GAPTTPAATPPSPKGGLAT----PPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATP 1179
Score = 65.9 bits (159), Expect = 6e-11
Identities = 70/253 (27%), Positives = 83/253 (32%), Gaps = 39/253 (15%)
Query: 121 GDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPF---------- 170
G A P P+ P PA P G P P G PA + PSP
Sbjct: 1161 GGLATPPPKGAPTTPAATPPSPKGGLATP---SPKG-APTTPAATPPSPKGGLATPSPKG 1216
Query: 171 RPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYS 230
P P A PP L +PS + T P P+ P P T SL
Sbjct: 1217 APTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKG 1276
Query: 231 GLQNPCSTATPGPPLGSFPFLPGGP---PEYGLGDP--------------PPPPGLLQPP 273
GL P P P + + P GGP P G P PPP G PP
Sbjct: 1277 GLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPP 1336
Query: 274 TLAPWQPSRGDGPPAVSSQPSGGRSL--GEEGP------PTRGASPPTPPVSIKSERLSP 325
+ P P PA + GG + +EGP P+ P P S K P
Sbjct: 1337 AVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIP 1396
Query: 326 APGGPGDFPKTFP 338
+P G P P
Sbjct: 1397 SPKGDPTSPAVIP 1409
Score = 61.6 bits (148), Expect = 1e-09
Identities = 86/301 (28%), Positives = 107/301 (35%), Gaps = 83/301 (27%)
Query: 121 GDPALPRPRLYPAAPAMPSPDVVYGALPPPGC-----------DPSGLGEALPAQSRPSP 169
G PA P P+ P PA P + G PP P G P + P+P
Sbjct: 1253 GGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTP 1312
Query: 170 --FRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRS 227
P +PK G PG P +P TPP + P+ LP +GG T
Sbjct: 1313 PAATPPSPK-GSPGTPPPKGAP------TPPAVTPPSPKGTPTLPATTPSSKGGPTT--- 1362
Query: 228 LYSGLQNPCSTATPGPPLGSFPFLPGGP------PEYG------LGDPPPPPGLLQPPTL 275
P S P PP + P GGP P+ G GDP P + P
Sbjct: 1363 -------PSSKEGPTPPAAT-PSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKK 1414
Query: 276 APWQP---------SRGD-GPPAVS----------SQPSGGRSL-GEEGPPTRGA----S 310
AP P S+GD PPAV+ S P GG + +G PT A S
Sbjct: 1415 APATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPS 1474
Query: 311 PPTPPV--------SIKSERLSPAPGGPGDFPKTFPYPLLLARSLAEPLRPGPALRRLPL 362
P PP S K +PAP G P P S + + P+ RR P+
Sbjct: 1475 PKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIP-------SSPKEVPATPSSRRDPI 1527
Query: 363 A 363
A
Sbjct: 1528 A 1528
Score = 59.3 bits (142), Expect = 5e-09
Identities = 76/270 (28%), Positives = 93/270 (34%), Gaps = 33/270 (12%)
Query: 119 EGGDPALPRPRLYPAAPA--MPSPD------VVYGA-LPPPGCDPSGLGEALPAQSRPSP 169
+G A P P+ P PA +PSP + GA PP PS G + +P
Sbjct: 1044 KGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAP 1103
Query: 170 FRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLY 229
PAA P G L +P H + T P P+ P P T S
Sbjct: 1104 MPPAATPPSPKG---GLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPK 1160
Query: 230 SGLQNP-------CSTATPGPPLGSFPF-LPGGPPEYGLGDPPPPPGLLQPPTLAPWQPS 281
GL P ATP P G P G P PP P G L P+
Sbjct: 1161 GGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPS----PKG 1216
Query: 282 RGDGPPAVSSQPSGGRSL--GEEGPPTRGASPPTPPVSIKSERLSPAPGGPGDFPKTFPY 339
P A P GG + + P T A+PP+P K +P P G P P
Sbjct: 1217 APTTPAATPPSPKGGLATPSPKGAPTTPAATPPSP----KGGPATPPPKGAPTPPAATP- 1271
Query: 340 PLLLARSLAEPLR--PGPALRRLPLADGWP 367
P L P + P PA+ P G P
Sbjct: 1272 PSLKGGLATPPHKGAPNPAVVTPPSPKGGP 1301
Score = 52.8 bits (125), Expect = 5e-07
Identities = 61/221 (27%), Positives = 73/221 (33%), Gaps = 29/221 (13%)
Query: 132 PAAPAMPSPDVVYGALPPPGCDP-SGLGEALPAQSRPSP--FRPAAPKAGP--------P 180
PA P+P GA P P S G LP + P+P PK GP P
Sbjct: 850 PATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAP 909
Query: 181 GLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTAT 240
L SP + TP P +P P P T S G P
Sbjct: 910 ALSMTSSSPKKARA-TPAPKGIPAS------PSPKGAPTPPAATPPSPKGGPATPSPKWA 962
Query: 241 PGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLG 300
P PP + P GGP P P G PP P P G P+ P G +
Sbjct: 963 PTPPAATPPSPKGGPAT------PSPKGAPTPPAATPPSPKGGPATPS----PKGAPTPP 1012
Query: 301 EEGPPT-RGASPPTPPVSIKSERLSPAPGGPGDFPKTFPYP 340
PP+ +G+ TP S + P P P P P
Sbjct: 1013 AVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLP 1053
Score = 52.8 bits (125), Expect = 5e-07
Identities = 64/228 (28%), Positives = 78/228 (34%), Gaps = 27/228 (11%)
Query: 102 PDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEAL 161
P GP P K GDP LP P+ P+P V + P +
Sbjct: 1452 PKGGPATPSSK--------GDPTLPAVTP-PSPKEPPAPKQVATSSSPKKAPATPAPMGA 1502
Query: 162 PAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGG 221
P P P A P P+ + L SK P P E +P + P
Sbjct: 1503 PTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEAL---IPPAMTVP--- 1556
Query: 222 LNTSRSLYSGLQNPCST-ATPGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQP 280
S + P ATP S P P P G P P LL PP + P
Sbjct: 1557 ---SPKKTPAIPTPKEAPATPSSKEASSP--PAVTPSTYKGAPSPKE-LLIPPAVTSPSP 1610
Query: 281 SRGDGPPAVS--SQPSGGRSLGEEGPPTRGASPPTPPVSIKSERLSPA 326
PPAV+ S G + +G PT SPP P S+K SPA
Sbjct: 1611 KEAPTPPAVTPPSPEKGPATPAPKGTPT---SPPVTPSSLKDSPTSPA 1655
Score = 52.4 bits (124), Expect = 6e-07
Identities = 56/211 (26%), Positives = 72/211 (34%), Gaps = 37/211 (17%)
Query: 125 LPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVH 184
LP P+ PA PA P + + P ++R +P APK P
Sbjct: 893 LPFPKEGPATPA------------PKQAPALSMTSSSPKKARATP----APKGIPA---- 932
Query: 185 PLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPP 244
SPS + TPP P+ P P T S G P P PP
Sbjct: 933 ---SPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPP 989
Query: 245 LGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGP 304
+ P GGP P P G PP + P P G PA + P G + P
Sbjct: 990 AATPPSPKGGPA------TPSPKGAPTPPAVTPPSPK---GSPAATPFPKGASTPPAATP 1040
Query: 305 PTRGASPPTPPV-----SIKSERLSPAPGGP 330
P+ SP P+ + + L GGP
Sbjct: 1041 PSPKGSPAATPLPKGAPTTPAATLPSPKGGP 1071
Score = 36.6 bits (83), Expect = 0.037
Identities = 64/229 (27%), Positives = 85/229 (37%), Gaps = 30/229 (13%)
Query: 130 LYPAAP-AMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAA--PKAGPP---GLV 183
L P P ++PSP +LPP G P + + S S P A PK P G
Sbjct: 726 LAPEIPKSVPSP-----SLPPAGTPPGT--KKVDGISHTSALAPVASSPKECPTEDSGAS 778
Query: 184 HPLFSPSHLT----SKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTA 239
S LT S +P + + + +R G AGP + S S ++ ++
Sbjct: 779 ATASSKGTLTYLADSPSPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVE---ASF 835
Query: 240 TPGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPS-GGRS 298
P L SF P PP P G P + P P PP + PS
Sbjct: 836 LPENSL-SFQGSKDSPATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLP 894
Query: 299 LGEEGPPTRGASPPTPPVSI-----KSERLSPAPGG--PGDFPKTFPYP 340
+EGP T A P +S+ K R +PAP G PK P P
Sbjct: 895 FPKEGPAT-PAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTP 942
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 64.7 bits (156), Expect = 1e-10
Identities = 84/264 (31%), Positives = 94/264 (35%), Gaps = 36/264 (13%)
Query: 95 LDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDP 154
L G E+ P P PG G LP P L P A P P + A+PPP P
Sbjct: 902 LQGTEMLPPPPPPLPGAGIPPPPPLPGAGILPLPPL-PGAGIPPPPPLPGAAIPPPPPLP 960
Query: 155 SG---LGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDL 211
L LP P P P P AG P P + PPP LP G +
Sbjct: 961 GAGIPLPPPLPGAGIPPP--PPLPGAGIPP------PPPLPGAGIPPPPPLPGAG----I 1008
Query: 212 PGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGG-----PPEYGLGDPPPP 266
P P G+ L G P PG + P LPG PP G G PPPP
Sbjct: 1009 PPPPPLPGAGIPPPPPL-PGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPP 1067
Query: 267 P----GLLQPPTL-----APWQPSRGDGPPAVSSQPSGGRSLGEEGPPTRGASPPTPPVS 317
P G+ PP L P P G G P P G PP GA P PP
Sbjct: 1068 PLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGI---PPPPPLPGAGIPPPP-P 1123
Query: 318 IKSERLSPAPGGPG-DFPKTFPYP 340
+ + P P PG P P P
Sbjct: 1124 LPGAGIPPPPPLPGAGIPPPPPLP 1147
Score = 61.2 bits (147), Expect = 1e-09
Identities = 87/293 (29%), Positives = 103/293 (35%), Gaps = 43/293 (14%)
Query: 92 GIGLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPG 151
G G+ P P G P L G G +P P P A P P + +PPP
Sbjct: 983 GAGIPPPPPLPGAGIPPPPP----LPGAG----IPPPPPLPGAGIPPPPPLPGAGIPPPP 1034
Query: 152 CDP-SGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSD 210
P +G+ P P P P AG P P + PPP LP G
Sbjct: 1035 PLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP------PPPLPGAGIPPPPPLPGAG---- 1084
Query: 211 LPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGG-----PPEYGLGDPPP 265
+P P G+ L G+ P PG + P LPG PP G G PPP
Sbjct: 1085 IPPPPPLPGAGIPPPPPL-PGVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPP 1143
Query: 266 PP----GLLQPPTLA-----PWQPSRGDGPPAVSSQPSGG-------RSLGEEGPPTRGA 309
PP G+ PP L P P G G P P G +G PP
Sbjct: 1144 PPLPRVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGVGIPPPPPLPG 1203
Query: 310 SPPTPPVSIKSERLSPAPGGPGDFPKT-FPYPLLLARSLAEPLRPGPALRRLP 361
+ PP + + PAP P P T P P LL S PL P LP
Sbjct: 1204 AGIPPPPPLPGMGIPPAPAPPLPPPGTGIPPPPLLPVS-GPPLLPQVGSSTLP 1255
Score = 57.4 bits (137), Expect = 2e-08
Identities = 75/236 (31%), Positives = 87/236 (36%), Gaps = 36/236 (15%)
Query: 92 GIGLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPG 151
G G+ P P G P L G G +P P P A P P + +PPP
Sbjct: 1049 GAGIPPPPPLPGAGIPPPPP----LPGAG----IPPPPPLPGAGIPPPPPLPGAGIPPPP 1100
Query: 152 CDPSGLG----EALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGR 207
P G+G LP P P P P AG P P + PPP LP G
Sbjct: 1101 PLP-GVGIPPPPPLPGAGIPPP--PPLPGAGIPP------PPPLPGAGIPPPPPLPRVG- 1150
Query: 208 RSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPG-----GPPEYGLGD 262
+P P G+ L G P PG + P LPG PP G G
Sbjct: 1151 ---IPPPPPLPGAGIPPPPPL-PGAGIPPPPPLPGVGIPPPPPLPGVGIPPPPPLPGAGI 1206
Query: 263 PPPPP--GLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPTRGASPPTPPV 316
PPPPP G+ PP AP P G G P P G L P ++ PTP V
Sbjct: 1207 PPPPPLPGMGIPPAPAPPLPPPGTGIPPPPLLPVSGPPL---LPQVGSSTLPTPQV 1259
Score = 50.1 bits (118), Expect = 3e-06
Identities = 68/228 (29%), Positives = 79/228 (34%), Gaps = 35/228 (15%)
Query: 125 LPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVH 184
+P P P + S + PPP P LP+ + P P P G L
Sbjct: 855 IPSPPPLPCTESSSSMPGLGMVPPPPPPLPGMTVPTLPSTAIPQP----PPLQGTEMLPP 910
Query: 185 PLFSPSHLTSKTPPPLYLPTEG--RRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPG 242
P P + PPP LP G LPG P L P + P
Sbjct: 911 P--PPPLPGAGIPPPPPLPGAGILPLPPLPGAGIPPPPPL------------PGAAIPPP 956
Query: 243 PPLGSFPFLPGGPPEYGLGDPPPPP----GLLQPPTL-----APWQPSRGDGPPAVSSQP 293
PPL +P PP G G PPPPP G+ PP L P P G G P P
Sbjct: 957 PPLPGAG-IPLPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLP 1015
Query: 294 SGGRSLGEEGPPTRGASPPTPPVSIKSERLSPAPGGPG-DFPKTFPYP 340
G PP GA P PP + + P P PG P P P
Sbjct: 1016 GAGI---PPPPPLPGAGIPPPP-PLPGAGIPPPPPLPGAGIPPPPPLP 1059
Score = 38.5 bits (88), Expect = 0.010
Identities = 52/204 (25%), Positives = 67/204 (32%), Gaps = 28/204 (13%)
Query: 161 LPAQSRPSPFRPAAPKAGPPGLVHP-----------LFSPSHLTSKTP-PPLYLPTEGRR 208
L Q + + A A PP V P L PS + P P
Sbjct: 217 LQQQQQQQQLQGAEEPAAPPTAVSPQPGAFLGLDRFLLGPSGGAGEAPGSPDTEQALSAL 276
Query: 209 SDLPGGLAG-PR--------GGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPEYG 259
SDLP LA PR GGL S + P + +P +FPF GP E
Sbjct: 277 SDLPESLAAEPREPQQPPSPGGLPVSEAPSLPAAQPAAKDSPSST--AFPFPEAGPGEEA 334
Query: 260 LGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPTRGASPPTPPVSIK 319
G P G T + + P S +GE+ P G P
Sbjct: 335 AGAPVRGAG----DTDEEGEEDAFEDAPRGSPGEEWAPEVGEDAPQRLGEEPEEEAQGPD 390
Query: 320 SERLSPAPGGPGDFPKTF-PYPLL 342
+ + PG P + F PYPL+
Sbjct: 391 APAAASLPGSPAPSQRCFKPYPLI 414
Score = 29.3 bits (64), Expect = 5.9
Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Query: 256 PEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPP-AVSSQPSGGRSLGEEGPPTRGASPPTP 314
P + PPPPP LL + Q G PP ++S++ + P+P
Sbjct: 803 PTQSISQPPPPPSLL----WSAGQGQPGSQPPHSISTEFQTSHEHSVSSAFKNSCNIPSP 858
Query: 315 PVSIKSERLSPAPGGPGDFPKTFPYPLLLARSLAEPLRPGP 355
P +E S PG P P P + +L P P
Sbjct: 859 PPLPCTESSSSMPGLGMVPPPPPPLPGMTVPTLPSTAIPQP 899
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 64.7 bits (156), Expect = 1e-10
Identities = 79/251 (31%), Positives = 91/251 (36%), Gaps = 40/251 (15%)
Query: 94 GLDGPELEPDEG-PEEPGEKFRRLAG-----------EG--GDPALPRPRLYPAAPAMPS 139
GL GP P G P PG K R G +G G P + P P P +P
Sbjct: 340 GLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPG 399
Query: 140 PDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPP- 198
P GA+ PG P G G + Q P P G PGL P L PP
Sbjct: 400 PMGPPGAIGFPG--PKGEGGIVGPQGPPGP-------KGEPGLQGFPGKPGFLGEVGPPG 450
Query: 199 ------PLYLPTEGRRSDLPG-----GLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGS 247
P+ E + +PG GL GP+G GLQ P G P G
Sbjct: 451 MRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIPGD--QGLQGPPGIPGIGGPSGP 508
Query: 248 F--PFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPP 305
P +PG E GL PP PG+ +P P G QP G GPP
Sbjct: 509 IGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPP 568
Query: 306 TRGA-SPPTPP 315
A PPTPP
Sbjct: 569 GPPAVMPPTPP 579
Score = 52.0 bits (123), Expect = 8e-07
Identities = 79/279 (28%), Positives = 99/279 (35%), Gaps = 56/279 (20%)
Query: 86 ETLKRRGIGLDGPELEPDEGPE-EPGEKFRRLAGEGGDPALPR-----------PRLYPA 133
E + ++G + L ++GP EPG + G G P LP P+ YP
Sbjct: 102 EAVPKKGKEIPLASLRGEQGPRGEPGPR-----GPPGPPGLPGHGIPGIKGKPGPQGYPG 156
Query: 134 A--PAMPSPDVVYGALPPPGCDPS-GLGEALPAQSRPSPFRPAAP-------KAGPPGLV 183
P MP GA+ PG G + P P P P K G PGL
Sbjct: 157 VGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLP 216
Query: 184 HPLFSPSHLTSKTPPPLYLPT--EGRRSD----LPG--GLAGPRGGLNTSRSL-YSGLQN 234
P + P L P G + D +PG G+ GP G + G+
Sbjct: 217 G---QPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGK 273
Query: 235 PCSTATPGP--PLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQ 292
P T PGP PLG PG P E G P PG+ PP + DG P
Sbjct: 274 PGVTGFPGPQGPLGK----PGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGF 329
Query: 293 PSGGRSLGEEGPPTRGASPPTPPVSIKSERLSPAPGGPG 331
P G GE+G P P P + PG PG
Sbjct: 330 PGG---KGEQGLPGLPGPPGLPGIG--------KPGFPG 357
Score = 45.8 bits (107), Expect = 6e-05
Identities = 69/248 (27%), Positives = 84/248 (33%), Gaps = 53/248 (21%)
Query: 97 GPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDV--VYGALPP---PG 151
G E P +G E P L GE G P PR P P +P + + G P PG
Sbjct: 100 GKEAVPKKGKEIP---LASLRGEQGPRGEPGPRGPPGPPGLPGHGIPGIKGKPGPQGYPG 156
Query: 152 CDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDL 211
G+ +P + A + G G + P+ P P P LP G+
Sbjct: 157 VGKPGM-PGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPG--PQGPPGPHGLPGIGKPGG- 212
Query: 212 PG--GLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLG-SFPFLPG--GPPEYGLGDPPPP 266
PG G GP+G GL P P G P PG GPP G+ PP P
Sbjct: 213 PGLPGQPGPKGDRGPK-----GLPGPQGLRGPKGDKGFGMPGAPGVKGPP--GMHGPPGP 265
Query: 267 PGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPTRGASPPTPPVSIKSERLSPA 326
GL G G P V+ P LG+ G P P
Sbjct: 266 VGL------------PGVGKPGVTGFPGPQGPLGKPGAPGE-----------------PG 296
Query: 327 PGGPGDFP 334
P GP P
Sbjct: 297 PQGPIGVP 304
Score = 44.3 bits (103), Expect = 2e-04
Identities = 75/259 (28%), Positives = 90/259 (34%), Gaps = 58/259 (22%)
Query: 92 GIGLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAA--PAMPSPDVVYGALPP 149
GIG G + P + P PG K GE G P LP P P P P P G
Sbjct: 314 GIGKPGQDGIPGQ-PGFPGGK-----GEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGV 367
Query: 150 PGC-DPSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRR 208
PG P G + A P P P G PG+ P+ PP + G +
Sbjct: 368 PGALGPRGEKGPIGAPGIGGP--PGEP--GLPGIPGPM----------GPPGAIGFPGPK 413
Query: 209 SDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPEYGLGDPPPPPG 268
+ GG+ GP+G P PG L FP PG E G PP G
Sbjct: 414 GE--GGIVGPQGP-------------PGPKGEPG--LQGFPGKPGFLGEVG---PPGMRG 453
Query: 269 LLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGE---------EGPP----TRGASPPTPP 315
L P + P + G P + P GE +GPP G S P P
Sbjct: 454 L--PGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGP 511
Query: 316 VSIKSERLSPAPGGPGDFP 334
I + P GP FP
Sbjct: 512 PGIPGPKGEPGLPGPPGFP 530
Score = 37.0 bits (84), Expect = 0.028
Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 17/106 (16%)
Query: 94 GLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPP-GC 152
GL GP P +PG G G P LP P P P P P V PPP G
Sbjct: 539 GLHGP-------PGKPGA-----LGPQGQPGLPGP---PGPPGPPGPPAVMPPTPPPQGE 583
Query: 153 DPSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPP 198
+G + P + K G P P F+ + LT+ PP
Sbjct: 584 YLPDMGLGIDGVKPPHAYGAKKGKNGGPAYEMPAFT-AELTAPFPP 628
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 64.7 bits (156), Expect = 1e-10
Identities = 79/251 (31%), Positives = 91/251 (36%), Gaps = 40/251 (15%)
Query: 94 GLDGPELEPDEG-PEEPGEKFRRLAG-----------EG--GDPALPRPRLYPAAPAMPS 139
GL GP P G P PG K R G +G G P + P P P +P
Sbjct: 340 GLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPG 399
Query: 140 PDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPP- 198
P GA+ PG P G G + Q P P G PGL P L PP
Sbjct: 400 PMGPPGAIGFPG--PKGEGGIVGPQGPPGP-------KGEPGLQGFPGKPGFLGEVGPPG 450
Query: 199 ------PLYLPTEGRRSDLPG-----GLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGS 247
P+ E + +PG GL GP+G GLQ P G P G
Sbjct: 451 MRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIPGD--QGLQGPPGIPGIGGPSGP 508
Query: 248 F--PFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPP 305
P +PG E GL PP PG+ +P P G QP G GPP
Sbjct: 509 IGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPP 568
Query: 306 TRGA-SPPTPP 315
A PPTPP
Sbjct: 569 GPPAVMPPTPP 579
Score = 52.0 bits (123), Expect = 8e-07
Identities = 79/279 (28%), Positives = 99/279 (35%), Gaps = 56/279 (20%)
Query: 86 ETLKRRGIGLDGPELEPDEGPE-EPGEKFRRLAGEGGDPALPR-----------PRLYPA 133
E + ++G + L ++GP EPG + G G P LP P+ YP
Sbjct: 102 EAVPKKGKEIPLASLRGEQGPRGEPGPR-----GPPGPPGLPGHGIPGIKGKPGPQGYPG 156
Query: 134 A--PAMPSPDVVYGALPPPGCDPS-GLGEALPAQSRPSPFRPAAP-------KAGPPGLV 183
P MP GA+ PG G + P P P P K G PGL
Sbjct: 157 VGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLP 216
Query: 184 HPLFSPSHLTSKTPPPLYLPT--EGRRSD----LPG--GLAGPRGGLNTSRSL-YSGLQN 234
P + P L P G + D +PG G+ GP G + G+
Sbjct: 217 G---QPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGK 273
Query: 235 PCSTATPGP--PLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQ 292
P T PGP PLG PG P E G P PG+ PP + DG P
Sbjct: 274 PGVTGFPGPQGPLGK----PGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGF 329
Query: 293 PSGGRSLGEEGPPTRGASPPTPPVSIKSERLSPAPGGPG 331
P G GE+G P P P + PG PG
Sbjct: 330 PGG---KGEQGLPGLPGPPGLPGIG--------KPGFPG 357
Score = 45.8 bits (107), Expect = 6e-05
Identities = 69/248 (27%), Positives = 84/248 (33%), Gaps = 53/248 (21%)
Query: 97 GPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDV--VYGALPP---PG 151
G E P +G E P L GE G P PR P P +P + + G P PG
Sbjct: 100 GKEAVPKKGKEIP---LASLRGEQGPRGEPGPRGPPGPPGLPGHGIPGIKGKPGPQGYPG 156
Query: 152 CDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDL 211
G+ +P + A + G G + P+ P P P LP G+
Sbjct: 157 VGKPGM-PGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPG--PQGPPGPHGLPGIGKPGG- 212
Query: 212 PG--GLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLG-SFPFLPG--GPPEYGLGDPPPP 266
PG G GP+G GL P P G P PG GPP G+ PP P
Sbjct: 213 PGLPGQPGPKGDRGPK-----GLPGPQGLRGPKGDKGFGMPGAPGVKGPP--GMHGPPGP 265
Query: 267 PGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPTRGASPPTPPVSIKSERLSPA 326
GL G G P V+ P LG+ G P P
Sbjct: 266 VGL------------PGVGKPGVTGFPGPQGPLGKPGAPGE-----------------PG 296
Query: 327 PGGPGDFP 334
P GP P
Sbjct: 297 PQGPIGVP 304
Score = 44.3 bits (103), Expect = 2e-04
Identities = 75/259 (28%), Positives = 90/259 (34%), Gaps = 58/259 (22%)
Query: 92 GIGLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAA--PAMPSPDVVYGALPP 149
GIG G + P + P PG K GE G P LP P P P P P G
Sbjct: 314 GIGKPGQDGIPGQ-PGFPGGK-----GEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGV 367
Query: 150 PGC-DPSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRR 208
PG P G + A P P P G PG+ P+ PP + G +
Sbjct: 368 PGALGPRGEKGPIGAPGIGGP--PGEP--GLPGIPGPM----------GPPGAIGFPGPK 413
Query: 209 SDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPEYGLGDPPPPPG 268
+ GG+ GP+G P PG L FP PG E G PP G
Sbjct: 414 GE--GGIVGPQGP-------------PGPKGEPG--LQGFPGKPGFLGEVG---PPGMRG 453
Query: 269 LLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGE---------EGPP----TRGASPPTPP 315
L P + P + G P + P GE +GPP G S P P
Sbjct: 454 L--PGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGP 511
Query: 316 VSIKSERLSPAPGGPGDFP 334
I + P GP FP
Sbjct: 512 PGIPGPKGEPGLPGPPGFP 530
Score = 37.0 bits (84), Expect = 0.028
Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 17/106 (16%)
Query: 94 GLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPP-GC 152
GL GP P +PG G G P LP P P P P P V PPP G
Sbjct: 539 GLHGP-------PGKPGA-----LGPQGQPGLPGP---PGPPGPPGPPAVMPPTPPPQGE 583
Query: 153 DPSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPP 198
+G + P + K G P P F+ + LT+ PP
Sbjct: 584 YLPDMGLGIDGVKPPHAYGAKKGKNGGPAYEMPAFT-AELTAPFPP 628
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 64.3 bits (155), Expect = 2e-10
Identities = 76/260 (29%), Positives = 86/260 (33%), Gaps = 41/260 (15%)
Query: 108 EPGEK-FRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCD--PSGLGEALPAQ 164
EPGE R G GDP LP P P G PG D P G A
Sbjct: 1258 EPGEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRA---- 1313
Query: 165 SRPSPFRPAAPKA-GPPGLVHPLFSPSHLTSKTP------PPLYLPTEG-----RRSDL- 211
+P P AP G PGL P P + P P + EG R+ D
Sbjct: 1314 --GNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPG 1371
Query: 212 PGGLAGPRGGLNT----------SRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPEYGLG 261
P G GPRG L ++ + PGP G PG P GL
Sbjct: 1372 PSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGIA--PGEPGLPGLP 1429
Query: 262 DPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPP-------TRGASPPTP 314
P P G + PP + DG P + QP G GPP RG P
Sbjct: 1430 GSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLG 1489
Query: 315 PVSIKSERLSPAPGGPGDFP 334
K ER P P G P
Sbjct: 1490 EAGEKGERGPPGPAGSRGLP 1509
Score = 52.4 bits (124), Expect = 6e-07
Identities = 69/240 (28%), Positives = 89/240 (37%), Gaps = 34/240 (14%)
Query: 118 GEGGDPALPRPRLYPAAPAMPSPDVVYGALPP--PGCDPSGLGEALPAQSRPSPFRPAAP 175
G G+P P +P +P P G P P +P G+ + + P R P
Sbjct: 1311 GRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDP 1370
Query: 176 -KAGPPGLVHPLFSPSHLTSKTPPPLY-LPTEGRRSDL-PGGLAGP-RGGLNTSRSLYSG 231
+GPPG PL P + PP L +G + D G GP GG+ G
Sbjct: 1371 GPSGPPGPRGPLGDPG---PRGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPG 1427
Query: 232 LQ-NPCSTATPGPP---------LGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPS 281
L +P GPP P LPG P G P PPG + P +
Sbjct: 1428 LPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGP 1487
Query: 282 RGD-------GPPAVSSQPSGGRSL-GEEGPP-TRGASPPTPPVSIKSERLSPAPGGPGD 332
G+ GPP P+G R L G G P +G P P + E+ PG PGD
Sbjct: 1488 LGEAGEKGERGPPG----PAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEK--GEPGRPGD 1541
Score = 48.1 bits (113), Expect = 1e-05
Identities = 93/331 (28%), Positives = 107/331 (32%), Gaps = 100/331 (30%)
Query: 94 GLDGPELEPDE----GPE-EPGEKFRRLAGEG-------GDPAL------------PRPR 129
GL GP +P E GP+ EPG + + GEG GDP P PR
Sbjct: 1329 GLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPR 1388
Query: 130 LYPAAP--AMPSPDVVYGALPPPGCDPSGLGEALPA----QSRPSPFRPAAPKA------ 177
P P AM G PPG G+ P P P P P
Sbjct: 1389 GPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKG 1448
Query: 178 ----GPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRG-----GLNTSRSL 228
G PGL SP + PP P R P G AG +G G SR L
Sbjct: 1449 DSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGL 1508
Query: 229 YSGLQNPCSTATPGPPLGSF-------PFLPGGP---------PEYGLGDPPP------- 265
P + GPP + P PG P P+ GD P
Sbjct: 1509 PGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGAT 1568
Query: 266 -------PPGLLQPPTLAPWQPSRGD----------GPPAVSSQPSGGRSLGEEGPPTRG 308
PPGL+ P P + GD GPP S P GE+G P R
Sbjct: 1569 GVQGERGPPGLVLPGDPGP-KGDPGDRGPIGLTGRAGPPGDSGPP------GEKGDPGRP 1621
Query: 309 ASP-PTPP------VSIKSERLSPA-PGGPG 331
P P P V K + P PG PG
Sbjct: 1622 GPPGPVGPRGRDGEVGEKGDEGPPGDPGLPG 1652
Score = 47.0 bits (110), Expect = 3e-05
Identities = 66/209 (31%), Positives = 80/209 (38%), Gaps = 29/209 (13%)
Query: 151 GCDPSGLGEALPAQSRPSPFRPAAPKAGPP------GLVHPLFSPSHLTSKTPPP--LYL 202
G DP L P F A GP GL L S T P P +Y
Sbjct: 1194 GADPEQLRRLAPGMDSVQTF--FAVDDGPSLDQAVSGLATALCQASFTTQPRPEPCPVYC 1251
Query: 203 PTEGRRSDLPG-----GLAGPRG--GLNTSRSLYSGLQNPCSTATPGPPLGSFPFL---P 252
P +G++ + PG G GP G GL R+ G Q P +AT G FP P
Sbjct: 1252 P-KGQKGE-PGEMGLRGQVGPPGDPGL-PGRTGAPGPQGPPGSATAKGERG-FPGADGRP 1307
Query: 253 GGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGD-GPPAVSSQPSG-GRSLGEEGP--PTRG 308
G P G P PGL P L + G+ GP +P G+ +G EGP P R
Sbjct: 1308 GSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRK 1367
Query: 309 ASP-PTPPVSIKSERLSPAPGGPGDFPKT 336
P P+ P + P P GP P T
Sbjct: 1368 GDPGPSGPPGPRGPLGDPGPRGPPGLPGT 1396
Score = 46.6 bits (109), Expect = 4e-05
Identities = 77/262 (29%), Positives = 91/262 (34%), Gaps = 40/262 (15%)
Query: 94 GLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCD 153
GL G + EP ++ + R + G GD P PR P +P + G PG
Sbjct: 2111 GLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQ 2170
Query: 154 -PSGLGEALPAQSRPSPFRPAAP-KAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDL 211
P G + P P P AP AGP G P PP L L
Sbjct: 2171 GPRGPPGPVGGHGDPGP--PGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGL 2228
Query: 212 PG-----GLAGPRGGLNTSRSLYSGLQNPC-STATPGPP-----------LGSFPFLPGG 254
PG GL GP+G GL T PG P GS P +PG
Sbjct: 2229 PGPPGPSGLVGPQGS--------PGLPGQVGETGKPGAPGRDGASGKDGDRGS-PGVPGS 2279
Query: 255 PPEYGLGDPPPPPGLLQPPTLAPWQPSRG-DGPPAVSSQPSG--GRSLGEEGPPTRGASP 311
P G P PG PT AP Q G G P G G +GE P +G
Sbjct: 2280 PGLPGPVGPKGEPG----PTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGE--PGAKGDRG 2333
Query: 312 PTPPVSIKSER-LSPAPGGPGD 332
P K E + PG PG+
Sbjct: 2334 LPGPRGEKGEAGRAGEPGDPGE 2355
Score = 45.8 bits (107), Expect = 6e-05
Identities = 79/298 (26%), Positives = 100/298 (33%), Gaps = 62/298 (20%)
Query: 94 GLDGPELEPDEG-PEEPG----EKFRRLAGEGGDPALPRPRLYPAAP-AMPSPDVVYGAL 147
GL GP P +G P PG + R G G+ LP R P ++P+ D + L
Sbjct: 1890 GLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVPNVDRL---L 1946
Query: 148 PPPGCDPSGLGEALPAQSR------PSPFRPAAPKA-----GPPGLVHPLFSPSH----- 191
G S L E + P P R PK GPPG P+ P
Sbjct: 1947 ETAGIKASALREIVETWDESSGSFLPVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKG 2006
Query: 192 --------------LTSKTPP-PLYLPTEGRRSDLPG-----------GLAGPRG--GLN 223
L + PP P L E + +PG G G RG G
Sbjct: 2007 DRGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEK 2066
Query: 224 TSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPEYGLGDPPPPPGLL----QPPTLAPWQ 279
R P TPGPP P + P GL PPGL +P +
Sbjct: 2067 GERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQG 2126
Query: 280 PSRGDGPPAVSSQPSGGRSLGEEG----PPTRGASPPTPPVSIKSERLSPAP-GGPGD 332
P G P + G++G P RG + P ++ R P P GG GD
Sbjct: 2127 PKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGD 2184
Score = 43.1 bits (100), Expect = 4e-04
Identities = 80/305 (26%), Positives = 99/305 (32%), Gaps = 84/305 (27%)
Query: 94 GLDGPELEPDEGPEEPGEK----FRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPP 149
G GP+ +P P PGE+ FR G GDP + P G P
Sbjct: 1728 GPRGPKGDPGL-PGAPGERGIEGFRGPPGPQGDPGVR------------GPAGEKGDRGP 1774
Query: 150 PGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGL--VHPLFSPSHLTSKTPPPLYLPTEGR 207
PG D + P + PS AA KAG PG + L L + PP LP +
Sbjct: 1775 PGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPP-GLPGKPG 1833
Query: 208 RSDLPG-----------------------------GLAGPRGGLNTSRSLYSGLQNPCST 238
PG G GP+G L G Q P
Sbjct: 1834 EDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGIL--GPQGPPGL 1891
Query: 239 ATP-GPPLGSFPFLPGG------------------PPEYGL-GDPPPPPG---LLQP--- 272
P GPP FP +PGG P E GL G+P P LL+
Sbjct: 1892 PGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVPNVDRLLETAGI 1951
Query: 273 ------PTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPTRGASPPTP-PVSIKSERLSP 325
+ W S G P + GE+GPP + P +K +R P
Sbjct: 1952 KASALREIVETWDESSGSFLPVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDP 2011
Query: 326 APGGP 330
P GP
Sbjct: 2012 GPQGP 2016
Score = 41.2 bits (95), Expect = 0.001
Identities = 66/244 (27%), Positives = 78/244 (31%), Gaps = 66/244 (27%)
Query: 94 GLDGPELEPDEGPE--EPGEKFRRLAGEGGDPALPRPRLY--------PAAPAMPSPDVV 143
GL GP E E EPG+ GE G P P+ + P +P P P V
Sbjct: 2333 GLPGPRGEKGEAGRAGEPGDP-----GEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGV 2387
Query: 144 YGALPPPGCDPSGLGEALPAQS---------RPSPFRPAAPKAGPPGLVHPLFSPSHLTS 194
G L PG + P Q+ PS R A G G+ PL P S
Sbjct: 2388 KGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPGS 2447
Query: 195 KTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGG 254
PP +G + D GL GPRG PG
Sbjct: 2448 VGPPGA-SGLKGDKGDPGVGLPGPRGERGE---------------------------PGI 2479
Query: 255 PPEYGLGDPPPPPGLLQPPTLAPWQPSRGD----------GPPAVSSQPSGGR----SLG 300
E G P GL PP + +GD G AV P G R +G
Sbjct: 2480 RGEDGRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDMG 2539
Query: 301 EEGP 304
E GP
Sbjct: 2540 ERGP 2543
Score = 36.6 bits (83), Expect = 0.037
Identities = 79/305 (25%), Positives = 94/305 (30%), Gaps = 114/305 (37%)
Query: 106 PEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEA----L 161
P E G R L G G LP P P P + G PG P +GE
Sbjct: 2209 PGETGPPGRGLTGPTGAVGLPGP---------PGPSGLVGPQGSPGL-PGQVGETGKPGA 2258
Query: 162 PAQS--------RPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPG 213
P + R SP P +P G PG V P P + + LP PG
Sbjct: 2259 PGRDGASGKDGDRGSPGVPGSP--GLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPG 2316
Query: 214 GLAG----------------PRGGLNTSRSLYS----------------------GLQNP 235
GLAG PRG + G+ P
Sbjct: 2317 GLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFKGDPGVGVP 2376
Query: 236 CSTATPGPP-----LGSFPFLPGGPP---------------------EYGLGDPPP---- 265
S PGPP LG P LPG P E GL PP
Sbjct: 2377 GSPGPPGPPGVKGDLG-LPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGI 2435
Query: 266 --------PPGLLQPPTLAPWQPSRGD------GPPAVSSQP----SGGRSLGEEGPPTR 307
PPG + PP + + +GD GP +P GR G+EGP R
Sbjct: 2436 PGPLGPPGPPGSVGPPGASGLKGDKGDPGVGLPGPRGERGEPGIRGEDGRP-GQEGP--R 2492
Query: 308 GASPP 312
G + P
Sbjct: 2493 GLTGP 2497
Score = 36.2 bits (82), Expect = 0.048
Identities = 74/270 (27%), Positives = 92/270 (34%), Gaps = 63/270 (23%)
Query: 93 IGLDGPE-LEPDEGPE-------------EPGEK-------FRRLAGEGGDPALPRPRLY 131
+G GP L+ D+GP EPG+K R L G G P
Sbjct: 2538 MGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQPGAAG---I 2594
Query: 132 PAAPAMPSPDVVYGALPPPG----CDPSGL-GE-ALPAQSRPSPFRPAAPKAGPPGLVHP 185
P P P D V G G P GL GE + + +AGPPG
Sbjct: 2595 PGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEAGPPGRPGL 2654
Query: 186 LFSPSHLTSKTPPPLYLPTEGRRSDLPG--GLAGPRG--GLNTSRSLYSGLQNPCSTATP 241
+ P +S PG GL GP+G G + TP
Sbjct: 2655 AGHKGEMGEPGVPG--------QSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTP 2706
Query: 242 GPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGD-GPPAVSSQPSGGRSLG 300
G +G F PG G PP PPG + P Q +G+ GPP G R +G
Sbjct: 2707 G--IGGF---PGPSGNDGSAGPPGPPGSVGPRGPEGLQGQKGERGPP-------GERVVG 2754
Query: 301 EEGPPTRGASPPTPPVSIKSERLSPAPGGP 330
G P GA + E+ P P GP
Sbjct: 2755 APGVP--GAP------GERGEQGRPGPAGP 2776
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 64.3 bits (155), Expect = 2e-10
Identities = 83/251 (33%), Positives = 94/251 (37%), Gaps = 53/251 (21%)
Query: 94 GLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCD 153
GL G EP E E PGE+ + G GG P LP P P P G PPG
Sbjct: 334 GLLGDRGEPGEDGE-PGEQGPQ--GLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGV- 389
Query: 154 PSGLGEALPAQSRPSPFRPAA---PKA-GPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRS 209
P G+ P+ P P P A GPPG P P T + P G++
Sbjct: 390 PGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPG-FTGRPGGPGVAGALGQKG 448
Query: 210 DL--PG--GLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPEYGLGDPPP 265
DL PG GL GP G GLQ P A P P G LPG E GL PP
Sbjct: 449 DLGLPGQPGLRGPSG--------IPGLQGP---AGPIGPQG----LPGLKGEPGLPGPPG 493
Query: 266 PPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPTRGASPPTPPVSIKSERLSP 325
+P T P P G P ++ P GPP PP P
Sbjct: 494 EGRAGEPGTAGPTGPPGVPGSPGITGPP---------GPP----GPPGP----------- 529
Query: 326 APGGPGDFPKT 336
PG PG F +T
Sbjct: 530 -PGAPGAFDET 539
Score = 63.5 bits (153), Expect = 3e-10
Identities = 83/258 (32%), Positives = 96/258 (37%), Gaps = 45/258 (17%)
Query: 92 GIGLDGPELEPDEG-----PEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGA 146
G+G G P +G P PG G G P P + P +P P GA
Sbjct: 209 GVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGA 268
Query: 147 L---PPPGCDPSGLGEA--LPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLY 201
+ PPG D G+ A LP PS + GPPGL+ P T P L
Sbjct: 269 VGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGP-------TGYGMPGLP 321
Query: 202 LPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPG--GPP--- 256
P R GL G RG G Q P P P L LPG GPP
Sbjct: 322 GPKGDRGPAGVPGLLGDRG--EPGEDGEPGEQGPQGLGGP-PGLPGSAGLPGRRGPPGPK 378
Query: 257 -EYGLGDPPPPPGLLQPPTLAPWQPSRGD-GPPAVSSQPSGGRSLGEEGPPTRGASPPTP 314
E G G PP PG+ RGD GP ++ +P GE G P GA P
Sbjct: 379 GEAGPGGPPGVPGI------------RGDQGPSGLAGKPG---VPGERGLP--GAHGPPG 421
Query: 315 PVSIKSE-RLSPAPGGPG 331
P K E + PGGPG
Sbjct: 422 PTGPKGEPGFTGRPGGPG 439
Score = 62.4 bits (150), Expect = 6e-10
Identities = 82/279 (29%), Positives = 93/279 (33%), Gaps = 57/279 (20%)
Query: 116 LAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAP 175
L GE G P P PR P P P PG GL P + P F
Sbjct: 75 LKGEPGPPGKPGPRGPPGPPGFPG---------KPGMGKPGL-HGQPGPAGPPGFSRMG- 123
Query: 176 KAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNP 235
KAGPPGL + P + P + R P GL GP G + G+ P
Sbjct: 124 KAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGP 183
Query: 236 CS-------TATPGPP----------LGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPW 278
PGPP +G P LPG P G G P PPGL P
Sbjct: 184 PGFQGEPGPQGEPGPPGDRGLKGDNGVGQ-PGLPGAP---GQGGAPGPPGLPGP------ 233
Query: 279 QPSRGDGPPAVSSQPSGGRSLGEEGPP----TRG----ASPPTPP----VSIKSERLSPA 326
G G P + P GE GPP RG P PP V + P
Sbjct: 234 ---AGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPG 290
Query: 327 PGGP----GDFPKTFPYPLLLARSLAEPLRPGPALRRLP 361
P GP G+ P L+ P PGP R P
Sbjct: 291 PQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGP 329
Score = 38.9 bits (89), Expect = 0.007
Identities = 75/238 (31%), Positives = 86/238 (36%), Gaps = 34/238 (14%)
Query: 151 GCDP---SGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGR 207
GC P SG G A P + K GP G P + P PL LP + +
Sbjct: 21 GCGPRASSGGGAGGAAGYAPVKYIQPMQK-GPVG--PPFREGKGQYLEMPLPL-LPMDLK 76
Query: 208 RSDLPGGLAGPRGGLNTSRSLYS-GLQNPCSTATPGP--PLGSFPFLPGGPPEY-GLGDP 263
P G GPRG G+ P PGP P G GPP G P
Sbjct: 77 GEPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGP 136
Query: 264 PPPPGLLQPPTLAPWQPSRG-DGPPAVSSQPSG----GR--SLGEEGPPTRGASP----- 311
P PGL P + Q RG GPP + PSG G+ + G GPP P
Sbjct: 137 PGQPGLRGEPGIRGDQGLRGPPGPPGLPG-PSGITIPGKPGAQGVPGPPGFQGEPGPQGE 195
Query: 312 PTPP--VSIKSERLSPAPGGPGDFPKTFPYPLLLARSLAEPLRPGPALRRLPLADGWP 367
P PP +K + PG PG P P P PGPA P DG P
Sbjct: 196 PGPPGDRGLKGDNGVGQPGLPG-APGQGGAP-------GPPGLPGPAGLGKPGLDGLP 245
Score = 28.9 bits (63), Expect = 7.7
Identities = 43/146 (29%), Positives = 53/146 (36%), Gaps = 17/146 (11%)
Query: 94 GLDGPELEPDEGPEEPGEKFRRLAGEGGD------PALPRPRLYPA--APAMP-SPDVVY 144
G GP+ EP G G+ GD P L P P PA P P +
Sbjct: 421 GPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLP 480
Query: 145 GALPPPGCD-PSGLGEA-LPAQSRPS--PFRPAAP----KAGPPGLVHPLFSPSHLTSKT 196
G PG P G G A P + P+ P P +P GPPG P +P
Sbjct: 481 GLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETG 540
Query: 197 PPPLYLPTEGRRSDLPGGLAGPRGGL 222
L+LP G + G P+ GL
Sbjct: 541 IAGLHLPNGGVEGAVLGKGGKPQFGL 566
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 63.9 bits (154), Expect = 2e-10
Identities = 75/246 (30%), Positives = 92/246 (37%), Gaps = 54/246 (21%)
Query: 131 YPAAP-----AMPSPDVVYGALPPPGCDPS-------GLGEALPAQSR---PSPFRPAAP 175
YP P + PSP LPPP + S G G A P +S PS PA P
Sbjct: 246 YPPPPQSDSASSPSPSFSEDNLPPPPAEFSYPVDNQRGSGLAGPKRSSVVSPSHPPPAPP 305
Query: 176 KAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNP 235
PPG P F+P PPP+ G+ P + G +P
Sbjct: 306 LGSPPG-PKPGFAPPPAPPPPPPPMI------------GIPPPPPPV--------GFGSP 344
Query: 236 CSTATPGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSG 295
+ P PP SFP P++ PPPPP PTL PP SQP+G
Sbjct: 345 GTPPPPSPP--SFP----PHPDFAAPPPPPPPPAADYPTL----------PPPPLSQPTG 388
Query: 296 GRSLGEEGPPTRGASPPTPPVSIKSERLSPAPGGPGDFPKTFPYPLLLARS-LAEPLRPG 354
G PP G PP P + P P PK+ + ARS L +R G
Sbjct: 389 GAPPPPPPPPPPG-PPPPPFTGADGQPAIPPPLSDTTKPKSSLPAVSDARSDLLSAIRQG 447
Query: 355 PALRRL 360
LRR+
Sbjct: 448 FQLRRV 453
Score = 48.5 bits (114), Expect = 9e-06
Identities = 56/200 (28%), Positives = 67/200 (33%), Gaps = 64/200 (32%)
Query: 90 RRGIGLDGPELEPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPP 149
+RG GL GP+ P P A G P P+P P P P + G PP
Sbjct: 281 QRGSGLAGPKRSSVVSPSHPPP-----APPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPP 335
Query: 150 PGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRS 209
P P G G P P +P + PP HP F + PPP P +
Sbjct: 336 P--PPVGFGS-------PGTPPPPSPPSFPP---HPDF------AAPPPPPPPPAADYPT 377
Query: 210 DLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGGPPEYGLGDPPPPPGL 269
P L+ P GG A P PP PPPPPG
Sbjct: 378 LPPPPLSQPTGG-----------------APPPPP------------------PPPPPGP 402
Query: 270 LQPPTLAPWQPSRGDGPPAV 289
PP + DG PA+
Sbjct: 403 PPPPF------TGADGQPAI 416
Score = 37.4 bits (85), Expect = 0.022
Identities = 35/102 (34%), Positives = 37/102 (36%), Gaps = 11/102 (10%)
Query: 118 GEGGDPALPRPRLYP-----AAPAMPSPDVV--YGALPPPGCDPSGLGEALPAQSRPSPF 170
G G P P P +P AAP P P Y LPPP G P P P
Sbjct: 342 GSPGTPPPPSPPSFPPHPDFAAPPPPPPPPAADYPTLPPPPLSQPTGGAPPPPPPPPPPG 401
Query: 171 RPAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLP-TEGRRSDL 211
P P G G P P L+ T P LP RSDL
Sbjct: 402 PPPPPFTGADG--QPAIPPP-LSDTTKPKSSLPAVSDARSDL 440
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 63.9 bits (154), Expect = 2e-10
Identities = 70/234 (29%), Positives = 87/234 (37%), Gaps = 35/234 (14%)
Query: 126 PRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSP-FRPAAPKAGPPGL-V 183
PRP L + P P + +PP G PSG P P+P P AP PP V
Sbjct: 243 PRPPLPESLPPPPPGGLPLPPMPPTGPAPSG-PPGPPQLPPPAPGVHPPAPVVHPPASGV 301
Query: 184 HP----LFSPSHLTSKTPPPLYLPTEGRRSDLPG------GLAGPRGGLNTSRSLYSGLQ 233
HP + P+ P ++ PT G PG G+ P G++ G+
Sbjct: 302 HPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPA---PGVH 358
Query: 234 NPCSTATPGPPLGSFPFLPGGPPEYGLGDP------PPPPGL-LQPPTLAPWQPSRGDGP 286
P P P G P PG P P PP PG+ Q P + P P
Sbjct: 359 PPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSA 418
Query: 287 PAVSSQPSGGRSLGEEGPPTRGASPPTP-PVSIKSERLSPAPG-GPGDFPKTFP 338
P V QP G P G PPTP P ++ P P GPG+ P P
Sbjct: 419 PGVHPQPPGVH------PSNPGVHPPTPMPPMLR----PPLPSEGPGNIPPPPP 462
Score = 52.4 bits (124), Expect = 6e-07
Identities = 74/259 (28%), Positives = 92/259 (35%), Gaps = 45/259 (17%)
Query: 132 PAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSH 191
PA P++P+ PPP L LP RP P + P P GL P P+
Sbjct: 218 PAPPSLPAGPPGVKRPPPP------LMNGLPP--RP-PLPESLPPPPPGGLPLPPMPPTG 268
Query: 192 LTSKTPP-PLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPF 250
PP P LP P + P SG+ P P P G P
Sbjct: 269 PAPSGPPGPPQLPPPAPGVHPPAPVVHPPA---------SGVHPPAPGVHPPAP-GVHPP 318
Query: 251 LPG-GPPEYGLGDP-----PPPPGLLQPPTLAPWQPSRGDGPPA--VSSQPSGGRSLGEE 302
PG PP G+ P PP PG+ PP P+ G PPA V PS G
Sbjct: 319 APGVHPPTSGVHPPAPGVHPPAPGV-HPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAP 377
Query: 303 G---------PPTRGASPPTPPVSIKSERLSPAPGG-----PGDFPKTFPYPLLLARSLA 348
G P G PP P + ++ + P P G PG P+ P + +
Sbjct: 378 GVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQ--PPGVHPSNPGV 435
Query: 349 EPLRPGPALRRLPLADGWP 367
P P P + R PL P
Sbjct: 436 HPPTPMPPMLRPPLPSEGP 454
Score = 32.7 bits (73), Expect = 0.53
Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 286 PPAVSSQPSGGRSLGEEGPPTRGASPPTPPVSIKSERLSPAPGGPGDFPKTFPYPLLLAR 345
PPA S P+G + PP PP PP+ E L P P G P P +
Sbjct: 217 PPAPPSLPAGPPGVKRPPPPLMNGLPPRPPL---PESLPPPPPGGLPLPPMPPTGPAPSG 273
Query: 346 SLAEPLRPGPA 356
P P PA
Sbjct: 274 PPGPPQLPPPA 284
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 63.5 bits (153), Expect = 3e-10
Identities = 79/281 (28%), Positives = 95/281 (33%), Gaps = 58/281 (20%)
Query: 92 GIGLDGP-ELEPDEGPEEPGEKFRRLAGEGGD-PALPRPRLYPAAPAMPSPDVVYGALPP 149
G G P E P PE P R G G P P PR P PA P+P PP
Sbjct: 72 GAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRR-PLVPAGPAPPAAKLRPPP 130
Query: 150 PG----CDPSGLGEALPAQSRPSPFRPAAP--------KAGP------------------ 179
G C P A+ A P+P PA P +AGP
Sbjct: 131 EGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPA 190
Query: 180 -PGLVHPLFSPSHLTSK---TPPPLYLPTEGRRSDLPGGLAGPRG-GLNTSRSLYSGLQN 234
PG L + L + P + L G + LP L P G + G
Sbjct: 191 GPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLP--LPKPAAPGTVIQTPPFVGAAA 248
Query: 235 PCSTATPGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQ--------PPTLAPWQP------ 280
P + A P PP P P P PPP P L PPT AP P
Sbjct: 249 PPAPAAPSPPAAPAPAAPAAAPP----PPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQ 304
Query: 281 SRGDGPPAVSSQPSGGRSLGEEGPPTRGASPPTPPVSIKSE 321
+ G A + P+ G G G P GA+ P +K+E
Sbjct: 305 NGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAE 345
Score = 41.2 bits (95), Expect = 0.001
Identities = 43/162 (26%), Positives = 50/162 (30%), Gaps = 50/162 (30%)
Query: 172 PAAPKAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSG 231
PAAP G PG + PPP G A P GG
Sbjct: 75 PAAPAEGAPG-----------AAPEPPP-------------AGRARPGGG---------- 100
Query: 232 LQNPCSTATPGPPLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGP---PA 288
PGPP P +P GP PPP G P + GP PA
Sbjct: 101 -----GPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPA 155
Query: 289 VSSQPSGGRSLGEEGPPTRGASPPTPPVSIKSERLSPAPGGP 330
++P+G +L P G P P P PG P
Sbjct: 156 GPAKPAGPAALAARAGPGPGPGPGPGP--------GPGPGKP 189
Score = 38.5 bits (88), Expect = 0.010
Identities = 56/216 (25%), Positives = 67/216 (31%), Gaps = 59/216 (27%)
Query: 121 GDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPP 180
G A P P P+ PA P+P A PPP P+ L +RP P PA P P
Sbjct: 245 GAAAPPAPAA-PSPPAAPAPAAPAAAPPPPPPAPATL-------ARP-PGHPAGPPTAAP 295
Query: 181 GLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTAT 240
+ PPP GG AG A
Sbjct: 296 AV--------------PPPAAAQN--------GGSAG---------------------AA 312
Query: 241 PGP-PLGSFPFLPGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGGRSL 299
P P P P G P G P PG+ Q + +S P+ +
Sbjct: 313 PAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAAS 372
Query: 300 GEEGPPTRGASPPTPPVSIKSERLSPAPGGPGDFPK 335
GP +GA P V PAPG P PK
Sbjct: 373 MVIGPTMQGALPSPAAVP------PPAPGTPTGLPK 402
Score = 34.3 bits (77), Expect = 0.18
Identities = 40/141 (28%), Positives = 48/141 (34%), Gaps = 36/141 (25%)
Query: 242 GPPLGSFPFLPGGPPEYGLGD--PPPPPGLLQPPTLAPWQPS----------RGDGPPAV 289
G P G+ P P E G PPP G +P P +P G PPA
Sbjct: 65 GSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAA 124
Query: 290 SSQPSGGRSLGE-----------EGPPTRGASP--PTPPVSIKSERLSPAPG-GPGDFPK 335
+P S G GP A P P P ++ + R P PG GPG P
Sbjct: 125 KLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAAL-AARAGPGPGPGPGPGPG 183
Query: 336 TFPYPLLLARSLAEPLRPGPA 356
P +P PG A
Sbjct: 184 PGP---------GKPAGPGAA 195
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 63.5 bits (153), Expect = 3e-10
Identities = 73/245 (29%), Positives = 85/245 (34%), Gaps = 34/245 (13%)
Query: 124 ALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLV 183
ALPR R A+P S +G P PG P G + P+ RP P+ GPP
Sbjct: 417 ALPRQRQRDASPGRGS----HGQTPSPGALPLGRQTSQQPAGPPAQQRPP-PQGGPP--- 468
Query: 184 HPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSR--SLYSGLQNPCSTATP 241
P + PPL + GL P G R S S Q P S A P
Sbjct: 469 ----QPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAP 524
Query: 242 ---GPPLGSFPFL--PGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGG 296
G S P PG PP P P PP G PP S P GG
Sbjct: 525 PTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGG 584
Query: 297 RSLGEEGPPTRGASPPTPPVSIKSERLSPAPGGPGDFPKTFPYPLLLARSLAEPLRPGPA 356
+ +GPP + P P + + S A P P T P P PGPA
Sbjct: 585 QQ--RQGPPQKPPGPAGP-----TRQASQAGPVPRTGPPTTQQP--------RPSGPGPA 629
Query: 357 LRRLP 361
R P
Sbjct: 630 GRPKP 634
Score = 29.6 bits (65), Expect = 4.5
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 263 PPPPPGLLQP-----PTLAPWQPSRGDGPPAVSSQPSGGRSLG 300
PPPPPG P P A + S G P A + PS G S G
Sbjct: 31 PPPPPGAHSPGATPGPGTATAERSSGVAPAASPAAPSPGSSGG 73
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 63.5 bits (153), Expect = 3e-10
Identities = 73/245 (29%), Positives = 85/245 (34%), Gaps = 34/245 (13%)
Query: 124 ALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLV 183
ALPR R A+P S +G P PG P G + P+ RP P+ GPP
Sbjct: 417 ALPRQRQRDASPGRGS----HGQTPSPGALPLGRQTSQQPAGPPAQQRPP-PQGGPP--- 468
Query: 184 HPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSR--SLYSGLQNPCSTATP 241
P + PPL + GL P G R S S Q P S A P
Sbjct: 469 ----QPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAP 524
Query: 242 ---GPPLGSFPFL--PGGPPEYGLGDPPPPPGLLQPPTLAPWQPSRGDGPPAVSSQPSGG 296
G S P PG PP P P PP G PP S P GG
Sbjct: 525 PTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGG 584
Query: 297 RSLGEEGPPTRGASPPTPPVSIKSERLSPAPGGPGDFPKTFPYPLLLARSLAEPLRPGPA 356
+ +GPP + P P + + S A P P T P P PGPA
Sbjct: 585 QQ--RQGPPQKPPGPAGP-----TRQASQAGPVPRTGPPTTQQP--------RPSGPGPA 629
Query: 357 LRRLP 361
R P
Sbjct: 630 GRPKP 634
Score = 37.0 bits (84), Expect = 0.028
Identities = 49/202 (24%), Positives = 64/202 (31%), Gaps = 29/202 (14%)
Query: 101 EPDEGPEEPGEKFRR---------LAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPG 151
+P GP+ G ++ L+G G P P+ P+ + P A P G
Sbjct: 469 QPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQG 528
Query: 152 ----CDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVHP--LFSPSHLTSKTPPPLYLPTE 205
P G P +RP +AGPP + P+ + PP +
Sbjct: 529 QGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQ 588
Query: 206 GRRSDLPG--------GLAGP---RGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPGG 254
G PG AGP G T + SG P P P L P
Sbjct: 589 GPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSG---PGPAGRPKPQLAQKPSQDVP 645
Query: 255 PPEYGLGDPPPPPGLLQPPTLA 276
PP PP P L P A
Sbjct: 646 PPATAAAGGPPHPQLKASPAQA 667
Score = 29.6 bits (65), Expect = 4.5
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 263 PPPPPGLLQP-----PTLAPWQPSRGDGPPAVSSQPSGGRSLG 300
PPPPPG P P A + S G P A + PS G S G
Sbjct: 31 PPPPPGAHSPGATPGPGTATAERSSGVAPAASPAAPSPGSSGG 73
>gi|14249150 single stranded DNA binding protein 4 isoform a [Homo
sapiens]
Length = 385
Score = 63.2 bits (152), Expect = 4e-10
Identities = 77/248 (31%), Positives = 95/248 (38%), Gaps = 55/248 (22%)
Query: 133 AAPAMPSPDVVYGALPPPGCDPSGLGEAL----PAQSRPSPFRPAAPKAGPPGLVHPLFS 188
+A A PSP V G++ P +G A P S+PSP P AP GP G P S
Sbjct: 94 SAAAAPSP--VMGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHG--QPFMS 149
Query: 189 PSH-------LTSKTPPPLYLPTEGRRSDLPGGLA-GPRGGLNTSRSLYSGLQNPCSTAT 240
P L + PP LP G + LPG + PR + S + P T
Sbjct: 150 PRFPGGPRPTLRMPSQPPAGLP--GSQPLLPGAMEPSPRAQGHPS------MGGPMQRVT 201
Query: 241 PGPPLGSFPFLPGGPPEYGLGDPPPP-----PGL----LQPPTLAPWQPSRGDGPPAVSS 291
P + S GP YG G PPP PGL + P PW G+ P SS
Sbjct: 202 PPRGMASV-----GPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSS 256
Query: 292 QPSGGRSLGEEGPPTRGASPPTPPVSIKSERLSPAPGGPGDFPK---TFPYPLLLARSLA 348
P GPP G P TP + P+PG + + T P+ A
Sbjct: 257 SPG-----SYTGPPGGGGPPGTP--------IMPSPGDSTNSSENMYTIMNPIGQGAGRA 303
Query: 349 E-PLRPGP 355
PL PGP
Sbjct: 304 NFPLGPGP 311
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 62.8 bits (151), Expect = 5e-10
Identities = 66/190 (34%), Positives = 74/190 (38%), Gaps = 38/190 (20%)
Query: 176 KAGPPGLVHPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNP 235
KAGPPG P + P +P G R P G GP P
Sbjct: 185 KAGPPGGSSRAAFPQGGRGRGRFPGAVPG-GDRFPGPAGPGGPPPPF------------P 231
Query: 236 CSTATPGPPLGSFPFLPGGPPEYGLGDP-PPPPGLLQPPTLAPWQPSRGDGPPAVSSQPS 294
P PPLG P GPP G P PPPPG + PP LA P+RGD PP P
Sbjct: 232 AGQTPPRPPLG-----PPGPP----GPPGPPPPGQVLPPPLAG-PPNRGDRPPPPVLFP- 280
Query: 295 GGRSLGEEGPPTRGASPPTPPVSIKSERLSPA--------PGGPGDFPKTFPYPLLLARS 346
G+ G+ P G PP PP + P P PG FP P PL +
Sbjct: 281 -GQPFGQ---PPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLT 336
Query: 347 LAEPLR-PGP 355
LA P PGP
Sbjct: 337 LAPPPHLPGP 346
Score = 60.1 bits (144), Expect = 3e-09
Identities = 77/252 (30%), Positives = 90/252 (35%), Gaps = 58/252 (23%)
Query: 101 EPDEGPEEPGEKFRRLAGEGGDPALPRPRLYPAAPAMPSPDVVYGALPPPGCDPSGLGEA 160
E GP PG R +GG P P P P G PPP P+G
Sbjct: 183 EGKAGP--PGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGP-AGPGGPPPPF--PAGQTPP 237
Query: 161 LPAQSRPSPFRPAAPKAGPPGLV--HPLFSPSHLTSKTPPPLYLPTEGRRSDLPGGLAGP 218
P P P P P PPG V PL P + + PPP+ P + P
Sbjct: 238 RPPLGPPGP--PGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQ------------P 283
Query: 219 RGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLPG-----GPPEYGLGDPPPP------- 266
G Q P PGPP P +PG GPP G PPPP
Sbjct: 284 FG------------QPPLGPLPPGPP----PPVPGYGPPPGPPPPQQGPPPPPGPFPPRP 327
Query: 267 PGLL-QPPTLAPWQPSRGDGPPAVSSQPSGGRSLGEEGPPTRGASPPT----PPVSIKSE 321
PG L P TLAP P GPP + P+ + PPT P + PP +
Sbjct: 328 PGPLGPPLTLAP--PPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYG 385
Query: 322 RLSPAPGGPGDF 333
R P P GD+
Sbjct: 386 R--PPPYDRGDY 395
Score = 47.4 bits (111), Expect = 2e-05
Identities = 63/194 (32%), Positives = 71/194 (36%), Gaps = 42/194 (21%)
Query: 86 ETLKRRGIGLDGPELEPDEGPEEPGEKFRR-LAG---EGGDPALP---------RPRLYP 132
+T R +G GP P GP PG+ LAG G P P +P L P
Sbjct: 234 QTPPRPPLGPPGPPGPP--GPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGP 291
Query: 133 AAPAMPSPDVVYGALPPPGCDPSGLGEALPAQSRPSPFRPAAPKAGPPGLVHPLFSPSHL 192
P P P YG PPPG P G P P PF P P GP G L P HL
Sbjct: 292 LPPGPPPPVPGYG--PPPGPPPPQQGPPPP----PGPFPPRPP--GPLGPPLTLAPPPHL 343
Query: 193 TSKTPPPLYLPTEGRRSDLPGGLAGPRGGLNTSRSLYSGLQNPCSTATPGPPLGSFPFLP 252
PPP P + P P SG+ P S + PP +
Sbjct: 344 PG--PPPGAPPPAPHVN--PAFFPPPTN---------SGM--PTSDSRGPPPTDPY---- 384
Query: 253 GGPPEYGLGDPPPP 266
G PP Y GD PP
Sbjct: 385 GRPPPYDRGDYGPP 398
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.140 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,336,058
Number of Sequences: 37866
Number of extensions: 1958176
Number of successful extensions: 18513
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 1624
Number of HSP's that attempted gapping in prelim test: 8344
Number of HSP's gapped (non-prelim): 6759
length of query: 368
length of database: 18,247,518
effective HSP length: 104
effective length of query: 264
effective length of database: 14,309,454
effective search space: 3777695856
effective search space used: 3777695856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.