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Search of human proteins with 224494572
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|224494572 hypothetical protein LOC401082 [Homo sapiens]
(95 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|224494572 hypothetical protein LOC401082 [Homo sapiens] 208 9e-55
gi|28212280 hypothetical protein LOC283579 [Homo sapiens] 59 6e-10
gi|62243734 signal transducing adaptor family member 2 isoform 1... 53 6e-08
gi|237858668 hypothetical protein LOC123207 isoform d [Homo sapi... 49 9e-07
gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens] 47 4e-06
gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens] 47 4e-06
gi|63999355 chromosome 9 open reading frame 37 [Homo sapiens] 45 1e-05
gi|54112407 protein kinase CHK2 isoform c [Homo sapiens] 42 8e-05
gi|119964690 glycogenin 2 isoform b [Homo sapiens] 42 1e-04
gi|205277366 hypothetical protein LOC201158 isoform 1 [Homo sapi... 42 1e-04
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [... 41 2e-04
gi|57529246 ubiquitin thioesterase 19 [Homo sapiens] 41 2e-04
gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens] 41 2e-04
gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens] 41 2e-04
gi|226371669 discs large homolog 7 isoform b [Homo sapiens] 41 2e-04
gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens] 40 3e-04
gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo ... 40 3e-04
gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens] 40 3e-04
gi|169213800 PREDICTED: hypothetical protein [Homo sapiens] 40 5e-04
gi|169214229 PREDICTED: hypothetical protein [Homo sapiens] 40 5e-04
gi|169213573 PREDICTED: hypothetical protein [Homo sapiens] 40 5e-04
gi|29029530 sulfotransferase family, cytosolic, 1C, member 1 iso... 40 5e-04
gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sap... 39 0.001
gi|219689113 two pore segment channel 1 isoform 1 [Homo sapiens] 38 0.002
gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [H... 37 0.004
gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens] 37 0.004
gi|8922871 oleoyl-ACP hydrolase isoform 1 [Homo sapiens] 37 0.004
gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens] 36 0.006
gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo sap... 36 0.006
gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens] 35 0.010
>gi|224494572 hypothetical protein LOC401082 [Homo sapiens]
Length = 95
Score = 208 bits (529), Expect = 9e-55
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MAAWRCGGGCEHLEDGSHYVAQAGLELLGSSNSPTSAYQAAGTTGLHHCTPPIQVHIPRN 60
MAAWRCGGGCEHLEDGSHYVAQAGLELLGSSNSPTSAYQAAGTTGLHHCTPPIQVHIPRN
Sbjct: 1 MAAWRCGGGCEHLEDGSHYVAQAGLELLGSSNSPTSAYQAAGTTGLHHCTPPIQVHIPRN 60
Query: 61 EDNAWHKVFIIPLVFFTISPHKFAFLKPQEQCGLK 95
EDNAWHKVFIIPLVFFTISPHKFAFLKPQEQCGLK
Sbjct: 61 EDNAWHKVFIIPLVFFTISPHKFAFLKPQEQCGLK 95
>gi|28212280 hypothetical protein LOC283579 [Homo sapiens]
Length = 122
Score = 59.3 bits (142), Expect = 6e-10
Identities = 28/39 (71%), Positives = 30/39 (76%)
Query: 14 EDGSHYVAQAGLELLGSSNSPTSAYQAAGTTGLHHCTPP 52
E GSHY AQAGLELLGSSN P SA Q+AG TG+ HC P
Sbjct: 30 EMGSHYFAQAGLELLGSSNPPASASQSAGITGVSHCARP 68
>gi|62243734 signal transducing adaptor family member 2 isoform 1
[Homo sapiens]
Length = 449
Score = 52.8 bits (125), Expect = 6e-08
Identities = 28/50 (56%), Positives = 35/50 (70%)
Query: 9 GCEHLEDGSHYVAQAGLELLGSSNSPTSAYQAAGTTGLHHCTPPIQVHIP 58
G + +E G H+VAQAGLELL SS+ PTSA Q+AG TG+ H T P +P
Sbjct: 354 GPKPVEKGFHHVAQAGLELLTSSDPPTSASQSAGITGVSHHTWPHLSSLP 403
>gi|237858668 hypothetical protein LOC123207 isoform d [Homo
sapiens]
Length = 167
Score = 48.9 bits (115), Expect = 9e-07
Identities = 24/37 (64%), Positives = 28/37 (75%)
Query: 16 GSHYVAQAGLELLGSSNSPTSAYQAAGTTGLHHCTPP 52
GS Y+AQAGLELL SS+ P SA Q+AG TG+ H T P
Sbjct: 124 GSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQP 160
>gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens]
Length = 606
Score = 46.6 bits (109), Expect = 4e-06
Identities = 23/41 (56%), Positives = 28/41 (68%)
Query: 12 HLEDGSHYVAQAGLELLGSSNSPTSAYQAAGTTGLHHCTPP 52
H E G H+ QA LELLGSS+ P SA Q+AG TG++H P
Sbjct: 74 HPEMGFHHATQACLELLGSSDLPASASQSAGITGVNHRAQP 114
>gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens]
Length = 629
Score = 46.6 bits (109), Expect = 4e-06
Identities = 23/41 (56%), Positives = 28/41 (68%)
Query: 12 HLEDGSHYVAQAGLELLGSSNSPTSAYQAAGTTGLHHCTPP 52
H E G H+ QA LELLGSS+ P SA Q+AG TG++H P
Sbjct: 74 HPEMGFHHATQACLELLGSSDLPASASQSAGITGVNHRAQP 114
>gi|63999355 chromosome 9 open reading frame 37 [Homo sapiens]
Length = 176
Score = 45.4 bits (106), Expect = 1e-05
Identities = 24/39 (61%), Positives = 25/39 (64%)
Query: 18 HYVAQAGLELLGSSNSPTSAYQAAGTTGLHHCTPPIQVH 56
HYVAQA LELL SSN P SA Q+ G TG H P VH
Sbjct: 4 HYVAQADLELLTSSNPPASASQSTGITGGSHRARPGPVH 42
>gi|54112407 protein kinase CHK2 isoform c [Homo sapiens]
Length = 586
Score = 42.4 bits (98), Expect = 8e-05
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 4 WRCGGGCEHLEDGSHYVAQAGLELLGSSNSPTSAYQAAGTTGLHHCTPPIQVHIPRNEDN 63
W G +LE S +V Q+ LELL SS+ P SA Q+AG G+ H P+ + DN
Sbjct: 97 WALQDGFANLETESGHVTQSDLELLLSSDPPASASQSAGIRGVRHHPRPV-CSLKCVNDN 155
Query: 64 AW 65
W
Sbjct: 156 YW 157
>gi|119964690 glycogenin 2 isoform b [Homo sapiens]
Length = 501
Score = 42.0 bits (97), Expect = 1e-04
Identities = 21/27 (77%), Positives = 23/27 (85%)
Query: 18 HYVAQAGLELLGSSNSPTSAYQAAGTT 44
H+ AQAGLELL SSNSPTSA Q+AG T
Sbjct: 7 HHGAQAGLELLRSSNSPTSASQSAGMT 33
>gi|205277366 hypothetical protein LOC201158 isoform 1 [Homo
sapiens]
Length = 276
Score = 41.6 bits (96), Expect = 1e-04
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 17 SHYVAQAGLELLGSSNSPTSAYQAAGTTGLHHC 49
S ++AQ GL++LGS + P SA+Q+AG TG+ C
Sbjct: 157 SRHIAQTGLKVLGSRDPPASAFQSAGITGVSRC 189
>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
[Homo sapiens]
Length = 759
Score = 41.2 bits (95), Expect = 2e-04
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 13 LEDGSHYVAQAGLELLGSSNSPTSAYQAAGTTGL 46
+E G H+V QAGLELL SS+ PTSA Q+AG T +
Sbjct: 37 VEMGFHHVGQAGLELLISSDLPTSASQSAGITDM 70
>gi|57529246 ubiquitin thioesterase 19 [Homo sapiens]
Length = 1318
Score = 41.2 bits (95), Expect = 2e-04
Identities = 22/37 (59%), Positives = 23/37 (62%)
Query: 14 EDGSHYVAQAGLELLGSSNSPTSAYQAAGTTGLHHCT 50
E GS YVAQAGLE L S + SA AAG TG H T
Sbjct: 42 ETGSRYVAQAGLEPLASGDPSASASHAAGITGSRHRT 78
>gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 40.8 bits (94), Expect = 2e-04
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 19 YVAQAGLELLGSSNSPTSAYQAAGTTGLHHCTPPI 53
+V QAGLELL S + PTSA Q+AG TG+ H P+
Sbjct: 360 HVDQAGLELLISGDPPTSASQSAGITGVSHWARPV 394
>gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 40.8 bits (94), Expect = 2e-04
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 19 YVAQAGLELLGSSNSPTSAYQAAGTTGLHHCTPPI 53
+V QAGLELL S + PTSA Q+AG TG+ H P+
Sbjct: 360 HVDQAGLELLISGDPPTSASQSAGITGVSHWARPV 394
>gi|226371669 discs large homolog 7 isoform b [Homo sapiens]
Length = 842
Score = 40.8 bits (94), Expect = 2e-04
Identities = 23/35 (65%), Positives = 27/35 (77%), Gaps = 2/35 (5%)
Query: 12 HLED--GSHYVAQAGLELLGSSNSPTSAYQAAGTT 44
HL D GS YVA+AGLE+LGSS+ TSA + AGTT
Sbjct: 802 HLLDSVGSCYVARAGLEVLGSSDPTTSASRVAGTT 836
>gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens]
Length = 858
Score = 40.4 bits (93), Expect = 3e-04
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 20 VAQAGLELLGSSNSPTSAYQAAGTTGLHHCT 50
VAQAGLELL SS+ A Q+AG TG+ HCT
Sbjct: 701 VAQAGLELLVSSSPSALASQSAGITGMSHCT 731
>gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo
sapiens]
Length = 402
Score = 40.4 bits (93), Expect = 3e-04
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 19 YVAQAGLELLGSSNSPTSAYQAAGTTGLHHCTPPI 53
+V QAGLELL S + PTSA Q+AG TG+ H P+
Sbjct: 360 HVDQAGLELLISGDPPTSASQSAGITGVTHWARPV 394
>gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 40.4 bits (93), Expect = 3e-04
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 19 YVAQAGLELLGSSNSPTSAYQAAGTTGLHHCTPPI 53
+V QAGLELL S + PTSA Q+AG TG+ H P+
Sbjct: 360 HVDQAGLELLISGDPPTSASQSAGITGVTHWARPV 394
>gi|169213800 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 39.7 bits (91), Expect = 5e-04
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 16 GSHYVAQAGLELLGSSNSPTSAYQAAGTTGLHH 48
G ++V QAGLELL SS+ PTSA Q A TG+ H
Sbjct: 2 GLYHVGQAGLELLTSSDPPTSASQNAEITGVSH 34
>gi|169214229 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 39.7 bits (91), Expect = 5e-04
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 16 GSHYVAQAGLELLGSSNSPTSAYQAAGTTGLHH 48
G ++V QAGLELL SS+ PTSA Q A TG+ H
Sbjct: 2 GLYHVGQAGLELLTSSDPPTSASQNAEITGVSH 34
>gi|169213573 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 39.7 bits (91), Expect = 5e-04
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 16 GSHYVAQAGLELLGSSNSPTSAYQAAGTTGLHH 48
G ++V QAGLELL SS+ PTSA Q A TG+ H
Sbjct: 2 GLYHVGQAGLELLTSSDPPTSASQNAEITGVSH 34
>gi|29029530 sulfotransferase family, cytosolic, 1C, member 1
isoform b [Homo sapiens]
Length = 307
Score = 39.7 bits (91), Expect = 5e-04
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 14 EDGSHYVAQAGLELLGSSNSPTSAYQAAGTTGL 46
E G H+VAQAGL+LL SSN P S Q+A T L
Sbjct: 93 ETGFHHVAQAGLKLLSSSNPPASTSQSAKITDL 125
>gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sapiens]
Length = 1079
Score = 38.5 bits (88), Expect = 0.001
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 10 CEHLEDGSHYVAQAGLELLGSSNSPTSAYQAAGTTGLHH 48
C +E G H+V QA LELL S SA Q+AG TG+ H
Sbjct: 1038 CIFVETGFHHVGQACLELLTSGGLLASASQSAGITGVSH 1076
>gi|219689113 two pore segment channel 1 isoform 1 [Homo sapiens]
Length = 888
Score = 37.7 bits (86), Expect = 0.002
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 17 SHYVAQAGLELLGSSNSPTSAYQAAGTT 44
S Y+AQAGLELLGSS+SPT Q+A T
Sbjct: 3 SCYIAQAGLELLGSSSSPTLTSQSAEIT 30
>gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [Homo
sapiens]
Length = 619
Score = 36.6 bits (83), Expect = 0.004
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 11 EHLEDGSHYVAQAGLELLGSSNSPTSAYQAAGTT 44
+H+E G +V Q GLELL S + PT A Q+AG T
Sbjct: 306 DHVETGFRHVDQDGLELLTSGDPPTLASQSAGIT 339
>gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens]
Length = 558
Score = 36.6 bits (83), Expect = 0.004
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 13 LEDGSHYVAQAGLELLGSSNSPTSAYQAAGTT 44
LE H+V+QAGLELL S + PT A Q+AG T
Sbjct: 236 LETVFHHVSQAGLELLTSGDLPTLASQSAGIT 267
>gi|8922871 oleoyl-ACP hydrolase isoform 1 [Homo sapiens]
Length = 318
Score = 36.6 bits (83), Expect = 0.004
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 12/50 (24%)
Query: 7 GGGCEHL------------EDGSHYVAQAGLELLGSSNSPTSAYQAAGTT 44
GGG H E SH+VA+AGL+L SS+ P SAY AG +
Sbjct: 36 GGGSTHFAKWGQDTHDLLEETASHHVAKAGLKLRRSSDPPASAYPCAGVS 85
>gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens]
Length = 475
Score = 36.2 bits (82), Expect = 0.006
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 13 LEDGSHYVAQAGLELLGSSNSPTSAYQAAGTTGLHH 48
LE +A L L GS +SP SA QAAGTTG+ H
Sbjct: 432 LECSGMILAHCNLRLPGSRDSPASASQAAGTTGMCH 467
>gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo
sapiens]
Length = 365
Score = 36.2 bits (82), Expect = 0.006
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 13 LEDGSHYVAQAGLELLGSSNSPTSAYQAAGTTG 45
+E G H V QAGL+LL SS+ P Q+AG TG
Sbjct: 110 IETGFHRVGQAGLQLLTSSDPPALDSQSAGITG 142
>gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens]
Length = 629
Score = 35.4 bits (80), Expect = 0.010
Identities = 19/36 (52%), Positives = 19/36 (52%)
Query: 13 LEDGSHYVAQAGLELLGSSNSPTSAYQAAGTTGLHH 48
LE S A L LL SSN PTS Q GTTG H
Sbjct: 592 LECSSTITAHCSLNLLDSSNPPTSTSQVVGTTGACH 627
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,470,213
Number of Sequences: 37866
Number of extensions: 178676
Number of successful extensions: 466
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 390
Number of HSP's gapped (non-prelim): 83
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.