Guide to the Human Genome
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Name: ZNF18 Sequence: fasta or formatted (549aa) NCBI GI: 56118254
Description:

zinc finger protein 18

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         24           2
 C cysteine            3.1         17           1
 D aspartate           3.6         20           1
 E glutamate          10.9         60           2
 F phenylalanine       3.6         20           2
 G glycine             7.1         39           1
 H histidine           4.0         22           2
 I isoleucine          3.8         21           1
 K lysine              6.2         34           2
 L leucine            10.4         57           2
 M methionine          1.8         10           1
 N asparagine          2.4         13           1
 P proline             5.8         32           1
 Q glutamine           8.6         47           1
 R arginine            4.9         27           1
 S serine              8.7         48           3
 T threonine           4.4         24           1
 V valine              3.1         17           2
 W tryptophan          1.5          8           1
 Y tyrosine            1.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 18 
ZNF202                0.233   zinc finger protein 202 
ZNF263                0.216   zinc finger protein 263 
ZNF287                0.211   zinc finger protein 287 
ZNF274                0.201   zinc finger protein 274 isoform c 
ZNF274                0.201   zinc finger protein 274 isoform a 
ZNF274                0.201   zinc finger protein 274 isoform b 
ZSCAN5C               0.173   PREDICTED: zinc finger and SCAN domain containing 5...
ZSCAN5C               0.173   PREDICTED: zinc finger and SCAN domain containing 5...
ZSCAN5C               0.170   PREDICTED: zinc finger and SCAN domain containing 5...
ZNF184                0.160   zinc finger protein 184 
ZNF436                0.159   zinc finger protein 436 
ZNF436                0.159   zinc finger protein 436 
ZNF454                0.159   zinc finger protein 454 
ZNF34                 0.151   zinc finger protein 34 
ZNF420                0.151   zinc finger protein 420 
ZNF189                0.151   zinc finger protein 189 isoform 2 
ZNF189                0.151   zinc finger protein 189 isoform 1 
ZNF16                 0.151   zinc finger protein 16 
ZNF16                 0.151   zinc finger protein 16 
ZNF157                0.150   zinc finger protein 157 
ZNF2                  0.150   zinc finger protein 2 isoform a 
ZNF135                0.149   zinc finger protein 135 
ZNF251                0.148   zinc finger protein 251 
ZNF286B               0.148   zinc finger protein 286B 
ZNF570                0.148   zinc finger protein 570 
ZNF568                0.147   zinc finger protein 568 
ZSCAN2                0.146   zinc finger protein 29 isoform 1 
ZNF613                0.146   zinc finger protein 613 isoform 1 
ZNF286A               0.146   zinc finger protein 286 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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