Guide to the Human Genome
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Name: ZKSCAN1 Sequence: fasta or formatted (563aa) NCBI GI: 55769564
Description:

zinc finger protein 36

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         33           2
 C cysteine            3.0         17           1
 D aspartate           3.9         22           1
 E glutamate          11.2         63           3
 F phenylalanine       3.6         20           1
 G glycine             6.7         38           2
 H histidine           4.4         25           2
 I isoleucine          3.7         21           2
 K lysine              6.7         38           2
 L leucine             8.0         45           2
 M methionine          1.4          8           2
 N asparagine          3.2         18           1
 P proline             5.5         31           3
 Q glutamine           5.3         30           2
 R arginine            7.5         42           2
 S serine              9.4         53           3
 T threonine           5.5         31           2
 V valine              2.7         15           1
 W tryptophan          0.7          4           1
 Y tyrosine            1.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 36 
ZNF192                0.423   zinc finger protein 192 
ZNF167                0.366   zinc finger protein 167 isoform 1 
ZNF397                0.348   zinc finger protein 397 isoform 1 
ZKSCAN3               0.338   zinc finger with KRAB and SCAN domains 3 
ZKSCAN4               0.329   zinc finger with KRAB and SCAN domains 4 
ZNF397OS              0.322   zinc finger protein 397 opposite strand 
ZNF197                0.320   zinc finger protein 197 isoform 1 
ZNF263                0.313   zinc finger protein 263 
ZNF3                  0.299   zinc finger protein 3 isoform 2 
ZKSCAN5               0.297   zinc finger with KRAB and SCAN domains 5 
ZKSCAN5               0.297   zinc finger with KRAB and SCAN domains 5 
ZNF165                0.286   zinc finger protein 165 
ZNF498                0.276   zinc finger and SCAN domain containing 25 
ZSCAN22               0.276   zinc finger and SCAN domain containing 22 
ZNF202                0.267   zinc finger protein 202 
ZSCAN2                0.263   zinc finger protein 29 isoform 1 
ZNF323                0.252   zinc finger protein 323 
ZNF323                0.252   zinc finger protein 323 
ZNF323                0.252   zinc finger protein 323 
ZNF323                0.252   zinc finger protein 323 
ZNF213                0.246   zinc finger protein 213 
ZNF213                0.246   zinc finger protein 213 
ZNF436                0.244   zinc finger protein 436 
ZNF436                0.244   zinc finger protein 436 
ZNF75D                0.234   zinc finger protein 75 
ZNF420                0.227   zinc finger protein 420 
ZNF852                0.223   PREDICTED: zinc finger protein 852 
ZNF135                0.223   zinc finger protein 135 
ZNF189                0.222   zinc finger protein 189 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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