Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZNF498 Sequence: fasta or formatted (544aa) NCBI GI: 64368880
Description:

zinc finger and SCAN domain containing 25

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         35           2
 C cysteine            3.7         20           1
 D aspartate           2.2         12           1
 E glutamate          11.0         60           3
 F phenylalanine       3.9         21           2
 G glycine             9.6         52           3
 H histidine           4.6         25           2
 I isoleucine          1.7          9           1
 K lysine              5.5         30           1
 L leucine             8.1         44           2
 M methionine          1.3          7           1
 N asparagine          1.1          6           1
 P proline             8.8         48           3
 Q glutamine           7.4         40           3
 R arginine            8.1         44           2
 S serine              4.6         25           2
 T threonine           4.0         22           1
 V valine              4.6         25           2
 W tryptophan          1.7          9           1
 Y tyrosine            1.8         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger and SCAN domain containing 25 
ZNF263                0.281   zinc finger protein 263 
ZKSCAN1               0.275   zinc finger protein 36 
ZNF167                0.263   zinc finger protein 167 isoform 1 
ZNF500                0.242   zinc finger protein 500 
ZSCAN2                0.235   zinc finger protein 29 isoform 1 
ZNF436                0.215   zinc finger protein 436 
ZNF436                0.215   zinc finger protein 436 
ZNF79                 0.213   zinc finger protein 79 
ZNF213                0.211   zinc finger protein 213 
ZNF213                0.211   zinc finger protein 213 
ZFP112                0.204   zinc finger protein 228 isoform 1 
ZFP112                0.204   zinc finger protein 228 isoform 2 
ZNF248                0.202   zinc finger protein 248 
ZNF180                0.198   zinc finger protein 180 
ZNF239                0.197   zinc finger protein 239 
ZNF239                0.197   zinc finger protein 239 
ZNF239                0.197   zinc finger protein 239 
ZNF239                0.197   zinc finger protein 239 
ZNF852                0.197   PREDICTED: zinc finger protein 852 
ZNF852                0.197   PREDICTED: zinc finger protein 852 
PRDM9                 0.197   PR domain containing 9 
ZNF782                0.197   zinc finger protein 782 
ZNF41                 0.197   zinc finger protein 41 
ZNF41                 0.197   zinc finger protein 41 
ZNF3                  0.196   zinc finger protein 3 isoform 2 
ZNF16                 0.196   zinc finger protein 16 
ZNF16                 0.196   zinc finger protein 16 
ZNF25                 0.195   zinc finger protein 25 
ZNF615                0.195   zinc finger protein 615 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press