Guide to the Human Genome
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Name: ZSCAN21 Sequence: fasta or formatted (473aa) NCBI GI: 27544931
Description:

zinc finger protein 38

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         21           1
 C cysteine            4.2         20           2
 D aspartate           2.3         11           1
 E glutamate          11.2         53           2
 F phenylalanine       2.7         13           1
 G glycine             7.2         34           1
 H histidine           5.5         26           2
 I isoleucine          2.7         13           2
 K lysine              8.7         41           2
 L leucine             7.8         37           2
 M methionine          1.5          7           2
 N asparagine          2.5         12           1
 P proline             7.0         33           2
 Q glutamine           5.9         28           1
 R arginine            5.3         25           2
 S serine              8.2         39           3
 T threonine           5.1         24           1
 V valine              3.8         18           1
 W tryptophan          1.1          5           1
 Y tyrosine            2.7         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 38 
ZNF397OS              0.403   zinc finger protein 397 opposite strand 
ZNF397                0.402   zinc finger protein 397 isoform 1 
ZSCAN12               0.375   zinc finger and SCAN domain containing 12 
ZKSCAN3               0.371   zinc finger with KRAB and SCAN domains 3 
ZNF192                0.368   zinc finger protein 192 
ZNF323                0.358   zinc finger protein 323 
ZNF323                0.358   zinc finger protein 323 
ZNF323                0.358   zinc finger protein 323 
ZNF323                0.358   zinc finger protein 323 
ZSCAN22               0.336   zinc finger and SCAN domain containing 22 
ZNF394                0.326   zinc finger protein 394 
ZNF449                0.326   zinc finger protein 449 
ZNF165                0.324   zinc finger protein 165 
ZNF187                0.311   zinc finger protein 187 isoform b 
ZSCAN23               0.309   zinc finger protein 390 
ZNF187                0.309   zinc finger protein 187 isoform a 
ZNF232                0.309   zinc finger protein 232 
ZNF483                0.287   zinc finger protein 483 isoform a 
ZNF135                0.267   zinc finger protein 135 
ZSCAN16               0.265   zinc finger and SCAN domain containing 16 
ZNF345                0.262   zinc finger protein 345 
ZNF16                 0.261   zinc finger protein 16 
ZNF16                 0.261   zinc finger protein 16 
ZNF674                0.258   zinc finger family member 674 isoform 2 
ZNF674                0.258   zinc finger family member 674 isoform 1 
LOC647678             0.257   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC647678             0.257   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC100287477          0.257   PREDICTED: hypothetical protein XP_002343697 
ZNF420                0.256   zinc finger protein 420 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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