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Search of human proteins with 224493723
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|224493723 hypothetical protein LOC100130311 [Homo sapiens]
(190 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|224493723 hypothetical protein LOC100130311 [Homo sapiens] 375 e-105
gi|169201839 PREDICTED: similar to hCG2038970 [Homo sapiens] 34 0.087
gi|169201482 PREDICTED: similar to hCG2038970 [Homo sapiens] 34 0.087
gi|239744229 PREDICTED: similar to hCG2038970 [Homo sapiens] 34 0.087
gi|94966757 protein disulfide isomerase A2 [Homo sapiens] 33 0.15
gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo ... 33 0.19
gi|195947374 claudin 5 [Homo sapiens] 33 0.19
gi|195947372 claudin 5 [Homo sapiens] 33 0.19
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens] 31 0.56
gi|14149631 ring finger protein 112 [Homo sapiens] 31 0.73
gi|190014615 hypothetical protein LOC157983 [Homo sapiens] 30 0.96
gi|239756839 PREDICTED: hypothetical protein [Homo sapiens] 30 1.6
gi|169208819 PREDICTED: similar to kinase D-interacting substrat... 30 1.6
gi|239752695 PREDICTED: hypothetical protein XP_002345326 [Homo ... 30 1.6
gi|169208593 PREDICTED: similar to kinase D-interacting substrat... 30 1.6
gi|239747229 PREDICTED: hypothetical protein XP_002346943 [Homo ... 30 1.6
gi|169208169 PREDICTED: similar to kinase D-interacting substrat... 30 1.6
gi|239741037 PREDICTED: hypothetical protein XP_002342072 [Homo ... 30 1.6
gi|207452735 epiplakin 1 [Homo sapiens] 30 1.6
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 29 2.1
gi|116063562 FERM domain containing 4A [Homo sapiens] 29 2.1
gi|110611914 progesterone receptor [Homo sapiens] 29 2.8
gi|4506813 sodium channel, voltage-gated, type IX, alpha [Homo s... 29 2.8
gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo ... 28 3.6
gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo ... 28 3.6
gi|38788260 bromodomain PHD finger transcription factor isoform ... 28 3.6
gi|38788274 bromodomain PHD finger transcription factor isoform ... 28 3.6
gi|148276998 zinc finger protein 628 [Homo sapiens] 28 3.6
gi|46409372 G protein-coupled receptor 153 [Homo sapiens] 28 3.6
gi|5803173 solute carrier family 20, member 2 [Homo sapiens] 28 3.6
>gi|224493723 hypothetical protein LOC100130311 [Homo sapiens]
Length = 190
Score = 375 bits (964), Expect = e-105
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MKGTPSSLDTLMWIYHFHSSTEVALQPPLLSSLELSVAAAHEYLEQRFRELKSLEPPEPK 60
MKGTPSSLDTLMWIYHFHSSTEVALQPPLLSSLELSVAAAHEYLEQRFRELKSLEPPEPK
Sbjct: 1 MKGTPSSLDTLMWIYHFHSSTEVALQPPLLSSLELSVAAAHEYLEQRFRELKSLEPPEPK 60
Query: 61 MQGMLPAPKPTLGLVLREATASLVSFGTTLLEISALWLQQEARRLDGSAGPAPDGRDPGA 120
MQGMLPAPKPTLGLVLREATASLVSFGTTLLEISALWLQQEARRLDGSAGPAPDGRDPGA
Sbjct: 61 MQGMLPAPKPTLGLVLREATASLVSFGTTLLEISALWLQQEARRLDGSAGPAPDGRDPGA 120
Query: 121 ALSRVAQAAGQGVRQAGAAVGASARLLVQGAWLCLCGRGLQGSASFLRQSQQQLGLGIPG 180
ALSRVAQAAGQGVRQAGAAVGASARLLVQGAWLCLCGRGLQGSASFLRQSQQQLGLGIPG
Sbjct: 121 ALSRVAQAAGQGVRQAGAAVGASARLLVQGAWLCLCGRGLQGSASFLRQSQQQLGLGIPG 180
Query: 181 EPVSSGHGVS 190
EPVSSGHGVS
Sbjct: 181 EPVSSGHGVS 190
>gi|169201839 PREDICTED: similar to hCG2038970 [Homo sapiens]
Length = 915
Score = 33.9 bits (76), Expect = 0.087
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 91 LEISALWLQQEARRLDGSAGPAPDGRDPGAALSRVAQAAGQG-VRQAGAAVGASARL 146
L+ AL + +R+ GS+G +PD PG A + Q AG G +R AA G + L
Sbjct: 807 LQPPALGCPVQRQRVTGSSGQSPDPPIPGGASGPLWQRAGSGSLRSCAAAAGCTLSL 863
>gi|169201482 PREDICTED: similar to hCG2038970 [Homo sapiens]
Length = 821
Score = 33.9 bits (76), Expect = 0.087
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 91 LEISALWLQQEARRLDGSAGPAPDGRDPGAALSRVAQAAGQG-VRQAGAAVGASARL 146
L+ AL + +R+ GS+G +PD PG A + Q AG G +R AA G + L
Sbjct: 713 LQPPALGCPVQRQRVTGSSGQSPDPPIPGGASGPLWQRAGSGSLRSCAAAAGCTLSL 769
>gi|239744229 PREDICTED: similar to hCG2038970 [Homo sapiens]
Length = 904
Score = 33.9 bits (76), Expect = 0.087
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 91 LEISALWLQQEARRLDGSAGPAPDGRDPGAALSRVAQAAGQG-VRQAGAAVGASARL 146
L+ AL + +R+ GS+G +PD PG A + Q AG G +R AA G + L
Sbjct: 796 LQPPALGCPVQRQRVTGSSGQSPDPPIPGGASGPLWQRAGSGSLRSCAAAAGCTLSL 852
>gi|94966757 protein disulfide isomerase A2 [Homo sapiens]
Length = 525
Score = 33.1 bits (74), Expect = 0.15
Identities = 20/37 (54%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 53 SLEPPE---PKMQGMLPAPKPTLGLVLREATASLVSF 86
S EPPE PK G+L + TLGL LRE A LV F
Sbjct: 30 SEEPPEEEIPKEDGILVLSRHTLGLALREHPALLVEF 66
>gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo
sapiens]
Length = 536
Score = 32.7 bits (73), Expect = 0.19
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 98 LQQEARRLDGSAGPAPDGRDPGAALSRVAQAAGQGVRQAGAAVGASARLLVQGAWLCLCG 157
LQ R G PAP G P + A+ +GVR G G A+ Q LCL G
Sbjct: 188 LQPGGARAPGLQVPAPPG--PASPAPLPARQPHKGVRPLGCCRGGRAQAAGQPRGLCLPG 245
Query: 158 RG 159
RG
Sbjct: 246 RG 247
>gi|195947374 claudin 5 [Homo sapiens]
Length = 303
Score = 32.7 bits (73), Expect = 0.19
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 97 WLQQEARRLDG---------SAGPAPDGRDPGAALSRVAQAAGQGVRQAGAAVGASARLL 147
W QE R+ G SAG G GAA + +AG VR + A+G SA L
Sbjct: 34 WQTQEVRQTRGANGLGPRAGSAGAKAPGPAQGAAQHGLGGSAGLRVRVSPLAMG-SAALE 92
Query: 148 VQGAWLCLCGRG 159
+ G LCL G G
Sbjct: 93 ILGLVLCLVGWG 104
>gi|195947372 claudin 5 [Homo sapiens]
Length = 303
Score = 32.7 bits (73), Expect = 0.19
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 97 WLQQEARRLDG---------SAGPAPDGRDPGAALSRVAQAAGQGVRQAGAAVGASARLL 147
W QE R+ G SAG G GAA + +AG VR + A+G SA L
Sbjct: 34 WQTQEVRQTRGANGLGPRAGSAGAKAPGPAQGAAQHGLGGSAGLRVRVSPLAMG-SAALE 92
Query: 148 VQGAWLCLCGRG 159
+ G LCL G G
Sbjct: 93 ILGLVLCLVGWG 104
>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
Length = 1243
Score = 31.2 bits (69), Expect = 0.56
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 18/91 (19%)
Query: 47 RFRELKSLEPPEPKMQGMLPAPKPTLGLVLREATASLVSFGTTLLEISALWLQQEARRLD 106
RF+ S EP EP L PTL + +T L S E+ +
Sbjct: 1016 RFQVTSSKEPAEPLP---LQPTSPTLSGSPKPSTPQLTS---------------ESSDTE 1057
Query: 107 GSAGPAPDGRDPGAALSRVAQAAGQGVRQAG 137
SAG P+ R+ A R A+ G GV + G
Sbjct: 1058 DSAGGGPETREALAESDRAAEGLGAGVEEEG 1088
>gi|14149631 ring finger protein 112 [Homo sapiens]
Length = 632
Score = 30.8 bits (68), Expect = 0.73
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 119 GAALSRVAQAAGQGVRQAGAAVGASARLLVQGAWLCLCGRGLQGSASFLRQSQQQLGLGI 178
GA ++ A AA G+ AGAAVGA+ +V G G GL + + + + + L
Sbjct: 568 GAGMAAAALAAEAGMVAAGAAVGATGAAVVGGG----VGAGLAATVGCMEKEEDERLLEG 623
Query: 179 PGEPV 183
EP+
Sbjct: 624 DREPL 628
>gi|190014615 hypothetical protein LOC157983 [Homo sapiens]
Length = 295
Score = 30.4 bits (67), Expect = 0.96
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 93 ISALWLQQEARRLDGSAGPAPDGRDP-GAALSRVAQAAGQGVRQAGAAVGASAR 145
+S W + L+G AG GRDP SR + G+ + AG + GA+AR
Sbjct: 15 LSPFWDPATCKNLEGGAGEVVRGRDPRRLRTSRSTEILGEDL--AGPSAGAAAR 66
>gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 743
Score = 29.6 bits (65), Expect = 1.6
Identities = 31/117 (26%), Positives = 40/117 (34%), Gaps = 27/117 (23%)
Query: 56 PPEPKMQGMLPAPKPTLGLVLREATASLVSFGTT---LLEISALWLQQEARRLDGSAGPA 112
P +P + + T L++ A +++ F L W + R DG AG
Sbjct: 494 PLDPSIPYLCRHGDSTTSLIISYALVTIMDFPIPQGLALTTHPGWHSEAGGRRDGGAGQV 553
Query: 113 PDG-------RDP-----------------GAALSRVAQAAGQGVRQAGAAVGASAR 145
G R P GAAL R AQ AG G AVGA R
Sbjct: 554 VQGLRGPHGRRGPQVQAGWQAGRQAAALGRGAALRRAAQGAGSASGLLGGAVGARGR 610
>gi|169208819 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 29.6 bits (65), Expect = 1.6
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 111 PAPDGRDPGAALSRVAQAAGQGVRQAGAAVGASARLLVQGAWLCLCGRGLQ---GSASFL 167
P+P R P L+R A+AAG +AG+A S R QG+ GR + G+ +
Sbjct: 209 PSPR-RLPRPLLARFARAAGGHGGEAGSAGKNSGRHRAQGSERPELGRSMSLALGAVTEE 267
Query: 168 RQSQQQLG--LGIPGEPVSSGHG 188
++ + G + +P P SSG G
Sbjct: 268 EAARLRAGALMALPNSPQSSGTG 290
>gi|239752695 PREDICTED: hypothetical protein XP_002345326 [Homo
sapiens]
Length = 1014
Score = 29.6 bits (65), Expect = 1.6
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 12/54 (22%)
Query: 60 KMQGMLPAPKPTLGLVLREATASLVSFGTTLLEISALW----LQQEARRLDGSA 109
++Q L +P P LGL L++ T LV+ S+ W LQ ARR G A
Sbjct: 256 RVQTNLASPGPRLGLALKDTTGQLVN--------SSFWQQSNLQSLARRRQGKA 301
>gi|169208593 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 29.6 bits (65), Expect = 1.6
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 111 PAPDGRDPGAALSRVAQAAGQGVRQAGAAVGASARLLVQGAWLCLCGRGLQ---GSASFL 167
P+P R P L+R A+AAG +AG+A S R QG+ GR + G+ +
Sbjct: 209 PSPR-RLPRPLLARFARAAGGHGGEAGSAGKNSGRHRAQGSERPELGRSMSLALGAVTEE 267
Query: 168 RQSQQQLG--LGIPGEPVSSGHG 188
++ + G + +P P SSG G
Sbjct: 268 EAARLRAGALMALPNSPQSSGTG 290
>gi|239747229 PREDICTED: hypothetical protein XP_002346943 [Homo
sapiens]
Length = 1014
Score = 29.6 bits (65), Expect = 1.6
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 12/54 (22%)
Query: 60 KMQGMLPAPKPTLGLVLREATASLVSFGTTLLEISALW----LQQEARRLDGSA 109
++Q L +P P LGL L++ T LV+ S+ W LQ ARR G A
Sbjct: 256 RVQTNLASPGPRLGLALKDTTGQLVN--------SSFWQQSNLQSLARRRQGKA 301
>gi|169208169 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 29.6 bits (65), Expect = 1.6
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 111 PAPDGRDPGAALSRVAQAAGQGVRQAGAAVGASARLLVQGAWLCLCGRGLQ---GSASFL 167
P+P R P L+R A+AAG +AG+A S R QG+ GR + G+ +
Sbjct: 209 PSPR-RLPRPLLARFARAAGGHGGEAGSAGKNSGRHRAQGSERPELGRSMSLALGAVTEE 267
Query: 168 RQSQQQLG--LGIPGEPVSSGHG 188
++ + G + +P P SSG G
Sbjct: 268 EAARLRAGALMALPNSPQSSGTG 290
>gi|239741037 PREDICTED: hypothetical protein XP_002342072 [Homo
sapiens]
Length = 1014
Score = 29.6 bits (65), Expect = 1.6
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 12/54 (22%)
Query: 60 KMQGMLPAPKPTLGLVLREATASLVSFGTTLLEISALW----LQQEARRLDGSA 109
++Q L +P P LGL L++ T LV+ S+ W LQ ARR G A
Sbjct: 256 RVQTNLASPGPRLGLALKDTTGQLVN--------SSFWQQSNLQSLARRRQGKA 301
>gi|207452735 epiplakin 1 [Homo sapiens]
Length = 5090
Score = 29.6 bits (65), Expect = 1.6
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 100 QEARRLDGSAGPAPDGRDPGAALSRVAQAAGQGVRQAGAAVGASAR 145
Q+ARR G P P GR G + + G+G Q AA A+AR
Sbjct: 2589 QDARR--GPREPGPAGRGDGDSGRSQREGQGEGETQEAAAAAAAAR 2632
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 29.3 bits (64), Expect = 2.1
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 17 FHSSTEVALQPPLLSSLELSVAAAHEYLEQRFRELKSLEPPEPKMQGMLPAPKP 70
F +V+ +L + L + H Y + + RE S P M+ ++PAPKP
Sbjct: 1776 FWEPNKVSSNSGMLPNAVLPPSLDHNYAQWQEREENSHTEQPPLMKKIIPAPKP 1829
>gi|116063562 FERM domain containing 4A [Homo sapiens]
Length = 1039
Score = 29.3 bits (64), Expect = 2.1
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 19 SSTEVALQPPLLSSLELSVAAAHEYLEQRFRELKSLEPPEPKMQGMLPAPKP 70
S + + + +L++L+ A E L QR ELK L E ++ G LP P
Sbjct: 377 SDSSQSAKKDMLAALKSRQEALEETLRQRLEELKKLCLREAELTGKLPVEYP 428
>gi|110611914 progesterone receptor [Homo sapiens]
Length = 933
Score = 28.9 bits (63), Expect = 2.8
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 50 ELKSLEPPEPKMQGMLPAPKPTLGLVLREATASLVSFGT--TLLEISALWLQQEARRLDG 107
ELK+ P P + G P+P+ L+ R A T TL E+SA+ + LDG
Sbjct: 3 ELKAKGPRAPHVAGGPPSPEVGSPLLCRPAAGPFPGSQTSDTLPEVSAIPIS-----LDG 57
Query: 108 SAGPAP-DGRDP 118
P P G+DP
Sbjct: 58 LLFPRPCQGQDP 69
>gi|4506813 sodium channel, voltage-gated, type IX, alpha [Homo
sapiens]
Length = 1977
Score = 28.9 bits (63), Expect = 2.8
Identities = 19/50 (38%), Positives = 22/50 (44%)
Query: 25 LQPPLLSSLELSVAAAHEYLEQRFRELKSLEPPEPKMQGMLPAPKPTLGL 74
L PP S + +EQR E KS EP E K APKP+ L
Sbjct: 4 LPPPGPQSFVHFTKQSLALIEQRIAERKSKEPKEEKKDDDEEAPKPSSDL 53
>gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo
sapiens]
Length = 697
Score = 28.5 bits (62), Expect = 3.6
Identities = 15/27 (55%), Positives = 15/27 (55%)
Query: 119 GAALSRVAQAAGQGVRQAGAAVGASAR 145
GAAL R AQ AG G AVGA R
Sbjct: 538 GAALRRAAQGAGSASGLLGGAVGARGR 564
>gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo
sapiens]
Length = 697
Score = 28.5 bits (62), Expect = 3.6
Identities = 15/27 (55%), Positives = 15/27 (55%)
Query: 119 GAALSRVAQAAGQGVRQAGAAVGASAR 145
GAAL R AQ AG G AVGA R
Sbjct: 538 GAALRRAAQGAGSASGLLGGAVGARGR 564
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 28.5 bits (62), Expect = 3.6
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 66 PAPKPTLGLVLREATASLVSFGTTLLEISALWLQQEARRLDGSAGPAPDG 115
P+P+PT G+ R ++ S L + LW + R D A AP G
Sbjct: 1883 PSPRPTFGITWRYRLQTVKSLAGVSLMLRLLW---ASLRWDDMAAKAPPG 1929
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 28.5 bits (62), Expect = 3.6
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 66 PAPKPTLGLVLREATASLVSFGTTLLEISALWLQQEARRLDGSAGPAPDG 115
P+P+PT G+ R ++ S L + LW + R D A AP G
Sbjct: 1757 PSPRPTFGITWRYRLQTVKSLAGVSLMLRLLW---ASLRWDDMAAKAPPG 1803
>gi|148276998 zinc finger protein 628 [Homo sapiens]
Length = 1055
Score = 28.5 bits (62), Expect = 3.6
Identities = 39/122 (31%), Positives = 47/122 (38%), Gaps = 16/122 (13%)
Query: 56 PPEPKMQGMLPAPKPTLGLVLREATASLVSFGTTLLEISALWLQQEARRLD------GSA 109
PP + +LP + TL L + TA S G L Q A+ L
Sbjct: 668 PPATQDVHVLPHLQATLSLEVAGGTAQAPSLGPAAPNSQTFLLVQTAQGLQLIPSSVQPP 727
Query: 110 GPAPDGRDPGAAL--SRVAQAAGQGVRQAGAAVGASARLLVQGA---WL-CLCGRGLQGS 163
P P P L S A A G RQ AVG + QGA WL G G+QG+
Sbjct: 728 TPPPPPAPPKLILLPSSSAGAGGGRARQGPRAVGKAG----QGAGVVWLPGPGGLGVQGA 783
Query: 164 AS 165
AS
Sbjct: 784 AS 785
>gi|46409372 G protein-coupled receptor 153 [Homo sapiens]
Length = 609
Score = 28.5 bits (62), Expect = 3.6
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 19/110 (17%)
Query: 49 RELKSLEPPEPKMQGMLPAPKPTLGLVLREATASLV--SFGTTLLEISALWLQQEARRLD 106
R + P P+ + P P P R A+ASL+ +F T E Q RR
Sbjct: 473 RGARDSPPGSPRRR---PGPGP------RSASASLLPDAFALTAFECEP----QALRRPP 519
Query: 107 G---SAGPAPDGRDPGAALSRVAQA-AGQGVRQAGAAVGASARLLVQGAW 152
G +A APDG DPG A + + A G R + + S R + +W
Sbjct: 520 GPFPAAPAAPDGADPGEAPTPPSSAQRSPGPRPSAHSHAGSLRPGLSASW 569
>gi|5803173 solute carrier family 20, member 2 [Homo sapiens]
Length = 652
Score = 28.5 bits (62), Expect = 3.6
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 70 PTLGLVLREATASLVSFGTTLLEISALWL---QQEARRLDGSAGPAPDGRDPGAALSRVA 126
P LGLVL +L+SFG LL +WL R++ G ALSRV+
Sbjct: 204 PVLGLVLPMWAIALISFGVALLFAFFVWLFVCPWMRRKITGKL-------QKEGALSRVS 256
Query: 127 QAAGQGVRQAGAAV 140
+ V++A + V
Sbjct: 257 DESLSKVQEAESPV 270
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,045,611
Number of Sequences: 37866
Number of extensions: 356905
Number of successful extensions: 1799
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1747
Number of HSP's gapped (non-prelim): 81
length of query: 190
length of database: 18,247,518
effective HSP length: 96
effective length of query: 94
effective length of database: 14,612,382
effective search space: 1373563908
effective search space used: 1373563908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.