Guide to the Human Genome
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Name: LOC100129103 Sequence: fasta or formatted (904aa) NCBI GI: 239744229
Description:

PREDICTED: similar to hCG2038970

Not currently referenced in the text

Other entries for this name:
alt prot {821aa} PREDICTED: similar to hCG2038970
alt prot {915aa} PREDICTED: similar to hCG2038970
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         88           4
 C cysteine            3.7         33           1
 D aspartate           2.0         18           1
 E glutamate           4.1         37           2
 F phenylalanine       2.9         26           1
 G glycine            10.3         93           3
 H histidine           2.8         25           1
 I isoleucine          1.8         16           1
 K lysine              3.7         33           2
 L leucine             9.8         89           3
 M methionine          1.4         13           1
 N asparagine          1.4         13           1
 P proline             9.3         84           3
 Q glutamine           5.1         46           2
 R arginine            8.0         72           2
 S serine              9.6         87           2
 T threonine           5.4         49           2
 V valine              6.4         58           2
 W tryptophan          1.8         16           2
 Y tyrosine            0.9          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2038970 
LOC100129103          0.843   PREDICTED: similar to hCG2038970 
LOC100129103          0.622   PREDICTED: similar to hCG2038970 
SRRM2                 0.009   splicing coactivator subunit SRm300 
CXorf67               0.007   hypothetical protein LOC340602 
MUC17                 0.007   mucin 17 
LOC100291991          0.006   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC100290472          0.006   PREDICTED: hypothetical protein XP_002346905 
LOC100287825          0.006   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC100293375          0.005   PREDICTED: hypothetical protein 
LOC100130311          0.005   hypothetical protein LOC100130311 
LOC100287825          0.005   PREDICTED: hypothetical protein XP_002342738 
C10orf91              0.005   hypothetical protein LOC170393 
CCDC80                0.004   steroid-sensitive protein 1 
CCDC80                0.004   steroid-sensitive protein 1 
OBSCN                 0.004   obscurin, cytoskeletal calmodulin and titin-interac...
ETV3                  0.004   ets variant gene 3 isoform 1 
LOC730130             0.004   hypothetical protein LOC730130 
LOC100130370          0.004   PREDICTED: similar to hCG1816473 
LOC202781             0.004   PREDICTED: hypothetical protein 
LOC100130370          0.004   PREDICTED: similar to hCG1816473 
LOC202781             0.004   PREDICTED: hypothetical protein 
LOC202781             0.004   PREDICTED: hypothetical protein 
BAI2                  0.004   brain-specific angiogenesis inhibitor 2 
LBA1                  0.004   lupus brain antigen 1 
LOC100293192          0.004   PREDICTED: hypothetical protein 
KRTAP4-6              0.004   PREDICTED: keratin associated protein 4.6 
LOC100290351          0.004   PREDICTED: hypothetical protein XP_002347615 
KRTAP4-9              0.004   PREDICTED: keratin associated protein 4-9 
LOC100287175          0.004   PREDICTED: hypothetical protein XP_002343445 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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