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Search of human proteins with 224282187
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|224282187 HOP homeobox isoform a [Homo sapiens]
(91 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|224282187 HOP homeobox isoform a [Homo sapiens] 188 9e-49
gi|224451023 HOP homeobox isoform b [Homo sapiens] 152 7e-38
gi|21264589 HOP homeobox isoform b [Homo sapiens] 152 7e-38
gi|21264587 HOP homeobox isoform b [Homo sapiens] 152 7e-38
gi|224451025 HOP homeobox isoform c [Homo sapiens] 134 1e-32
gi|27777663 goosecoid [Homo sapiens] 47 4e-06
gi|189083681 paired box gene 6 isoform a [Homo sapiens] 45 1e-05
gi|4580424 paired box gene 6 isoform b [Homo sapiens] 45 1e-05
gi|4505615 paired box gene 6 isoform a [Homo sapiens] 45 1e-05
gi|4826912 paired-like homeodomain 3 [Homo sapiens] 42 1e-04
gi|21361183 paired-like homeodomain transcription factor 2 isofo... 42 1e-04
gi|24234711 paired-like homeodomain transcription factor 2 isofo... 42 1e-04
gi|24234708 paired-like homeodomain transcription factor 2 isofo... 42 1e-04
gi|170784824 paired box 4 [Homo sapiens] 41 2e-04
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 40 3e-04
gi|4885363 goosecoid homeobox 2 [Homo sapiens] 40 3e-04
gi|34365783 visual system homeobox 2 [Homo sapiens] 39 7e-04
gi|152963644 paired-like homeodomain transcription factor 1 [Hom... 39 7e-04
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 39 0.001
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 39 0.001
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 39 0.001
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 39 0.001
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 39 0.001
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 39 0.001
gi|122937321 UNC homeobox [Homo sapiens] 39 0.001
gi|11056038 visual system homeobox 1 isoform a [Homo sapiens] 38 0.002
gi|24497589 aristaless related homeobox [Homo sapiens] 38 0.002
gi|122937484 dorsal root ganglia homeobox [Homo sapiens] 38 0.002
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 37 0.003
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 37 0.003
>gi|224282187 HOP homeobox isoform a [Homo sapiens]
Length = 91
Score = 188 bits (477), Expect = 9e-49
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MLIFLGCYRRRLEERAGTMSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGL 60
MLIFLGCYRRRLEERAGTMSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGL
Sbjct: 1 MLIFLGCYRRRLEERAGTMSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGL 60
Query: 61 SEEETQKWFKQRLAKWRRSEGLPSECRSVTD 91
SEEETQKWFKQRLAKWRRSEGLPSECRSVTD
Sbjct: 61 SEEETQKWFKQRLAKWRRSEGLPSECRSVTD 91
>gi|224451023 HOP homeobox isoform b [Homo sapiens]
Length = 73
Score = 152 bits (383), Expect = 7e-38
Identities = 73/73 (100%), Positives = 73/73 (100%)
Query: 19 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR 78
MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
Sbjct: 1 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR 60
Query: 79 SEGLPSECRSVTD 91
SEGLPSECRSVTD
Sbjct: 61 SEGLPSECRSVTD 73
>gi|21264589 HOP homeobox isoform b [Homo sapiens]
Length = 73
Score = 152 bits (383), Expect = 7e-38
Identities = 73/73 (100%), Positives = 73/73 (100%)
Query: 19 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR 78
MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
Sbjct: 1 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR 60
Query: 79 SEGLPSECRSVTD 91
SEGLPSECRSVTD
Sbjct: 61 SEGLPSECRSVTD 73
>gi|21264587 HOP homeobox isoform b [Homo sapiens]
Length = 73
Score = 152 bits (383), Expect = 7e-38
Identities = 73/73 (100%), Positives = 73/73 (100%)
Query: 19 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR 78
MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR
Sbjct: 1 MSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRR 60
Query: 79 SEGLPSECRSVTD 91
SEGLPSECRSVTD
Sbjct: 61 SEGLPSECRSVTD 73
>gi|224451025 HOP homeobox isoform c [Homo sapiens]
Length = 112
Score = 134 bits (338), Expect = 1e-32
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MLIFLGCYRRRLEERAGTMSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGL 60
MLIFLGCYRRRLEERAGTMSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGL
Sbjct: 1 MLIFLGCYRRRLEERAGTMSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGL 60
Query: 61 SEEETQ 66
SEEETQ
Sbjct: 61 SEEETQ 66
>gi|27777663 goosecoid [Homo sapiens]
Length = 257
Score = 46.6 bits (109), Expect = 4e-06
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSEGLPSE 85
T++Q+E LE F + K+PD T +A + L EE+ + WFK R AKWRR + SE
Sbjct: 168 TDEQLEALENLFQET-KYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKRSSSE 224
>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 45.4 bits (106), Expect = 1e-05
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSEGLPSECR 87
T++Q+E LE F + +PD +AA+ L E Q WF R AKWRR E L ++ R
Sbjct: 218 TQEQIEALEKEFERTH-YPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRR 276
Query: 88 SVTD 91
++
Sbjct: 277 QASN 280
>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
Length = 436
Score = 45.4 bits (106), Expect = 1e-05
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSEGLPSECR 87
T++Q+E LE F + +PD +AA+ L E Q WF R AKWRR E L ++ R
Sbjct: 232 TQEQIEALEKEFERTH-YPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRR 290
Query: 88 SVTD 91
++
Sbjct: 291 QASN 294
>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 45.4 bits (106), Expect = 1e-05
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSEGLPSECR 87
T++Q+E LE F + +PD +AA+ L E Q WF R AKWRR E L ++ R
Sbjct: 218 TQEQIEALEKEFERTH-YPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRR 276
Query: 88 SVTD 91
++
Sbjct: 277 QASN 280
>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
Length = 302
Score = 41.6 bits (96), Expect = 1e-04
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSE 80
T Q++ LE F + +++PD +T IA L+E + WFK R AKWR+ E
Sbjct: 70 TSQQLQELEATFQR-NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 121
>gi|21361183 paired-like homeodomain transcription factor 2 isoform
c [Homo sapiens]
Length = 324
Score = 41.6 bits (96), Expect = 1e-04
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSE 80
T Q++ LE F + +++PD +T IA L+E + WFK R AKWR+ E
Sbjct: 100 TSQQLQELEATFQR-NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 151
>gi|24234711 paired-like homeodomain transcription factor 2
isoform a [Homo sapiens]
Length = 271
Score = 41.6 bits (96), Expect = 1e-04
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSE 80
T Q++ LE F + +++PD +T IA L+E + WFK R AKWR+ E
Sbjct: 47 TSQQLQELEATFQR-NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 98
>gi|24234708 paired-like homeodomain transcription factor 2 isoform
b [Homo sapiens]
Length = 317
Score = 41.6 bits (96), Expect = 1e-04
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSE 80
T Q++ LE F + +++PD +T IA L+E + WFK R AKWR+ E
Sbjct: 93 TSQQLQELEATFQR-NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 144
>gi|170784824 paired box 4 [Homo sapiens]
Length = 343
Score = 41.2 bits (95), Expect = 2e-04
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 31 QVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSEGLPSE 85
Q E LE F + ++PDS +A L E+ + WF R AKWRR E L E
Sbjct: 173 QAEALEKEFQR-GQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQEKLKWE 226
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 40.4 bits (93), Expect = 3e-04
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSE 80
T+ Q++ LE NF ++PD +AA L+E+ Q WF+ R AKW+R++
Sbjct: 147 TQFQLQELE-NFFDESQYPDVVARERLAARLNLTEDRVQVWFQNRRAKWKRNQ 198
>gi|4885363 goosecoid homeobox 2 [Homo sapiens]
Length = 205
Score = 40.4 bits (93), Expect = 3e-04
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSEGLPSECR 87
+E+Q++ LE F + +++PD +T +A L EE + WFK R AKWR + + R
Sbjct: 134 SEEQLQALEALFVQ-NQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWRHQKRASASAR 192
>gi|34365783 visual system homeobox 2 [Homo sapiens]
Length = 361
Score = 39.3 bits (90), Expect = 7e-04
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSE 80
T Q+E LE FN+ +PD ++A + L E+ Q WF+ R AKWR+ E
Sbjct: 156 TSYQLEELEKAFNEAH-YPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKRE 207
>gi|152963644 paired-like homeodomain transcription factor 1 [Homo
sapiens]
Length = 314
Score = 39.3 bits (90), Expect = 7e-04
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSE 80
T Q++ LE F + +++PD + IA L+E + WFK R AKWR+ E
Sbjct: 97 TSQQLQELEATFQR-NRYPDMSMREEIAVWTNLTEPRVRVWFKNRRAKWRKRE 148
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 38.9 bits (89), Expect = 0.001
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSEG 81
T +Q+E LE F + +PD T +A A L+E Q WF R A+WR+ G
Sbjct: 226 TAEQLEELERAFERTH-YPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG 278
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 38.9 bits (89), Expect = 0.001
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSEG 81
T +Q+E LE F + +PD T +A A L+E Q WF R A+WR+ G
Sbjct: 227 TAEQLEELERAFERTH-YPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG 279
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 38.9 bits (89), Expect = 0.001
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSEG 81
T +Q+E LE F + +PD T +A A L+E Q WF R A+WR+ G
Sbjct: 227 TAEQLEELERAFERTH-YPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG 279
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 38.9 bits (89), Expect = 0.001
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSEG 81
T +Q+E LE F + +PD T +A A L+E Q WF R A+WR+ G
Sbjct: 227 TAEQLEELERAFERTH-YPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG 279
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 38.9 bits (89), Expect = 0.001
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSEG 81
T +Q+E LE F + +PD T +A A L+E Q WF R A+WR+ G
Sbjct: 227 TAEQLEELERAFERTH-YPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG 279
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 38.9 bits (89), Expect = 0.001
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSEG 81
T +Q+E LE F + +PD T +A A L+E Q WF R A+WR+ G
Sbjct: 227 TAEQLEELERAFERTH-YPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG 279
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 38.5 bits (88), Expect = 0.001
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 13 EERAGTMSAETASGPTEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQR 72
+E G T + T Q+E LE FN+ +PD +A L E Q WF+ R
Sbjct: 98 KESPGCKRRRTRTNFTGWQLEELEKAFNE-SHYPDVFMREALALRLDLVESRVQVWFQNR 156
Query: 73 LAKWRRSE 80
AKWR+ E
Sbjct: 157 RAKWRKKE 164
>gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]
Length = 365
Score = 38.1 bits (87), Expect = 0.002
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSE 80
T Q+E LE F++ +PD ++A + L E+ Q WF+ R AKWR+ E
Sbjct: 172 TAHQLEELEKAFSEAH-YPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKRE 223
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 38.1 bits (87), Expect = 0.002
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSE 80
T Q+E LE F K +PD T +A L+E Q WF+ R AKWR+ E
Sbjct: 336 TSYQLEELERAFQKTH-YPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKRE 387
>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
Length = 268
Score = 37.7 bits (86), Expect = 0.002
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSE 80
T Q+E LE F + +PD T +A + L+E Q WF+ R AKWR++E
Sbjct: 46 TLQQLEALEAVFAQTH-YPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTE 97
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 37.4 bits (85), Expect = 0.003
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSEG 81
T +Q+E LE F + +PD T +A L+E Q WF R A+WR+ G
Sbjct: 225 TAEQLEELEKAFERTH-YPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAG 277
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 37.4 bits (85), Expect = 0.003
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 28 TEDQVEILEYNFNKVDKHPDSTTLCLIAAEAGLSEEETQKWFKQRLAKWRRSEG 81
T +Q+E LE F + +PD T +A L+E Q WF R A+WR+ G
Sbjct: 223 TAEQLEELEKAFERTH-YPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAG 275
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,563,158
Number of Sequences: 37866
Number of extensions: 128714
Number of successful extensions: 641
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 171
length of query: 91
length of database: 18,247,518
effective HSP length: 62
effective length of query: 29
effective length of database: 15,899,826
effective search space: 461094954
effective search space used: 461094954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.