Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 224282125
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|224282125 tRNA-yW synthesizing protein 1 homolog B isoform 2
[Homo sapiens]
(471 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|224282125 tRNA-yW synthesizing protein 1 homolog B isoform 2 ... 967 0.0
gi|224282123 tRNA-yW synthesizing protein 1 homolog B isoform 1 ... 733 0.0
gi|50726981 radical S-adenosyl methionine and flavodoxin domains... 671 0.0
gi|103471997 DNA-directed RNA polymerase I A [Homo sapiens] 37 0.030
gi|21361517 UBX domain protein 1 [Homo sapiens] 37 0.039
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 36 0.086
gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 famil... 35 0.11
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 34 0.33
gi|28274705 family with sequence similarity 9, member A [Homo sa... 34 0.33
gi|4826724 zygin 1 isoform 1 [Homo sapiens] 33 0.43
gi|15149463 caldesmon 1 isoform 4 [Homo sapiens] 33 0.56
gi|15149467 caldesmon 1 isoform 3 [Homo sapiens] 33 0.56
gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 fami... 33 0.56
gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 33 0.56
gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 33 0.56
gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 famil... 33 0.73
gi|6005757 chromatin-specific transcription elongation factor la... 32 0.95
gi|33391150 nucleoplasmin 2 [Homo sapiens] 32 0.95
gi|21735569 claspin [Homo sapiens] 32 1.2
gi|24307965 UBX domain containing 2 [Homo sapiens] 32 1.2
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 32 1.2
gi|41281571 synovial sarcoma, X breakpoint 2 interacting protein... 32 1.2
gi|221219020 NYD-SP11 protein [Homo sapiens] 32 1.6
gi|4503257 death-domain associated protein isoform a [Homo sapiens] 32 1.6
gi|215422388 death-domain associated protein isoform a [Homo sap... 32 1.6
gi|215422366 death-domain associated protein isoform b [Homo sap... 32 1.6
gi|222136585 timeless homolog [Homo sapiens] 32 1.6
gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear... 32 1.6
gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear... 32 1.6
gi|169210053 PREDICTED: hypothetical protein [Homo sapiens] 32 1.6
>gi|224282125 tRNA-yW synthesizing protein 1 homolog B isoform 2
[Homo sapiens]
Length = 471
Score = 967 bits (2500), Expect = 0.0
Identities = 471/471 (100%), Positives = 471/471 (100%)
Query: 1 MDPSADTWDLSSPLISLWINRFYIYLGFAVSISLWICVQIVIEMQGFATVLAEAVTSLDL 60
MDPSADTWDLSSPLISLWINRFYIYLGFAVSISLWICVQIVIEMQGFATVLAEAVTSLDL
Sbjct: 1 MDPSADTWDLSSPLISLWINRFYIYLGFAVSISLWICVQIVIEMQGFATVLAEAVTSLDL 60
Query: 61 PVAIINLKEYDPDDHLIEEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEK 120
PVAIINLKEYDPDDHLIEEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEK
Sbjct: 61 PVAIINLKEYDPDDHLIEEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEK 120
Query: 121 REKEQQEEKSGLFRNMGRNEDGERRAMITPALREALTKQVDAPRERSLLQTHILWNESHR 180
REKEQQEEKSGLFRNMGRNEDGERRAMITPALREALTKQVDAPRERSLLQTHILWNESHR
Sbjct: 121 REKEQQEEKSGLFRNMGRNEDGERRAMITPALREALTKQVDAPRERSLLQTHILWNESHR 180
Query: 181 CMETTPSLACANKCVFCWWHHNNPVGTEWWWKMDQPEMILKEAIENHQNMIKQFKGVPGV 240
CMETTPSLACANKCVFCWWHHNNPVGTEWWWKMDQPEMILKEAIENHQNMIKQFKGVPGV
Sbjct: 181 CMETTPSLACANKCVFCWWHHNNPVGTEWWWKMDQPEMILKEAIENHQNMIKQFKGVPGV 240
Query: 241 KAERFEEGMTVKHCALSLVGEPIMYPEINRFLKLLHQCKISSFLVTNAQFPAEIRNLEPV 300
KAERFEEGMTVKHCALSLVGEPIMYPEINRFLKLLHQCKISSFLVTNAQFPAEIRNLEPV
Sbjct: 241 KAERFEEGMTVKHCALSLVGEPIMYPEINRFLKLLHQCKISSFLVTNAQFPAEIRNLEPV 300
Query: 301 TQLYVSVDASTKDSLKKIDRPLFKDFWQQFLDSLKALAVKQQRTVYRLTLVKAWNVDELQ 360
TQLYVSVDASTKDSLKKIDRPLFKDFWQQFLDSLKALAVKQQRTVYRLTLVKAWNVDELQ
Sbjct: 301 TQLYVSVDASTKDSLKKIDRPLFKDFWQQFLDSLKALAVKQQRTVYRLTLVKAWNVDELQ 360
Query: 361 AYAQLVSLGNPDFIEVKGVTYCRESSASSLTMAHVPWHEEVVQFVRELVDLIPEYEIACE 420
AYAQLVSLGNPDFIEVKGVTYCRESSASSLTMAHVPWHEEVVQFVRELVDLIPEYEIACE
Sbjct: 361 AYAQLVSLGNPDFIEVKGVTYCRESSASSLTMAHVPWHEEVVQFVRELVDLIPEYEIACE 420
Query: 421 HEHSNCLLIAHRKTVLGGTPGHGVTEIQWEEWIKKRLISQARWLMSVIPAH 471
HEHSNCLLIAHRKTVLGGTPGHGVTEIQWEEWIKKRLISQARWLMSVIPAH
Sbjct: 421 HEHSNCLLIAHRKTVLGGTPGHGVTEIQWEEWIKKRLISQARWLMSVIPAH 471
>gi|224282123 tRNA-yW synthesizing protein 1 homolog B isoform 1
[Homo sapiens]
Length = 668
Score = 733 bits (1892), Expect = 0.0
Identities = 361/386 (93%), Positives = 365/386 (94%), Gaps = 9/386 (2%)
Query: 68 KEYDPDDHLIEEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQE 127
+E D H +EEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQE
Sbjct: 230 QEQDELHHRDTKEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQE 289
Query: 128 EKSGLFRNMGRNEDGERRAMITPALREALTKQVDAPRERSLLQTHILWNESHRCMETTPS 187
EKSGLFRNMGRNEDGERRAMITPALREALTKQVDAPRERSLLQTHILWNESHRCMETTPS
Sbjct: 290 EKSGLFRNMGRNEDGERRAMITPALREALTKQVDAPRERSLLQTHILWNESHRCMETTPS 349
Query: 188 LACANKCVFCWWHHNNPVGTEWWWKMDQPEMILKEAIENHQNMIKQFKGVPGVKAERFEE 247
LACANKCVFCWWHHNNPVGTEW WKMDQPEMILKEAIENHQNMIKQFKGVPGVKAERFEE
Sbjct: 350 LACANKCVFCWWHHNNPVGTEWLWKMDQPEMILKEAIENHQNMIKQFKGVPGVKAERFEE 409
Query: 248 GMTVKHCALSLVGEPIMYPEINRFLKLLHQCKISSFLVTNAQFPAEIRNLEPVTQLYVSV 307
GMTVKHCALSLVGEPIMYPEINRFLKLLHQCKISSFLVTNAQFPAEIRNLEPVTQLYVSV
Sbjct: 410 GMTVKHCALSLVGEPIMYPEINRFLKLLHQCKISSFLVTNAQFPAEIRNLEPVTQLYVSV 469
Query: 308 DASTKDSLKKIDRPLFKDFWQQFLDSLKALAVKQQRTVYRLTLVKAWNVDELQAYAQLVS 367
DASTKDSLKKIDRPLFKDFWQQFLDSLKALAVKQQRTVYRLTLVKAWNVDELQAYAQLVS
Sbjct: 470 DASTKDSLKKIDRPLFKDFWQQFLDSLKALAVKQQRTVYRLTLVKAWNVDELQAYAQLVS 529
Query: 368 LGNPDFIEVKGVTYCRESSASSLTMAHVPWHEEVVQFVRELVDLIPEYEIACEHEHSNCL 427
LGNPDFIEVKGVTYCRESSASSLTMAHVPWHEEVVQFVRELVDLIPEYEIACEHEHSNCL
Sbjct: 530 LGNPDFIEVKGVTYCRESSASSLTMAHVPWHEEVVQFVRELVDLIPEYEIACEHEHSNCL 589
Query: 428 LIAHRKTVLGGTPGHGVTEIQWEEWI 453
LIAHRK +GG +W WI
Sbjct: 590 LIAHRKFKIGG---------EWWTWI 606
Score = 162 bits (409), Expect = 8e-40
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 1 MDPSADTWDLSSPLISLWINRFYIYLGFAVSISLWICVQIVIEMQGFATVLAEAVTSLDL 60
MDPSADTWDLSSPLISLWINRFYIYLGFAVSISLWICVQIVIEMQGFATVLAEAVTSLDL
Sbjct: 1 MDPSADTWDLSSPLISLWINRFYIYLGFAVSISLWICVQIVIEMQGFATVLAEAVTSLDL 60
Query: 61 PVAIINLKEYDPDDHLIEE 79
PVAIINLKEYDPDDHLIEE
Sbjct: 61 PVAIINLKEYDPDDHLIEE 79
>gi|50726981 radical S-adenosyl methionine and flavodoxin domains 1
[Homo sapiens]
Length = 732
Score = 671 bits (1731), Expect = 0.0
Identities = 343/403 (85%), Positives = 347/403 (86%), Gaps = 27/403 (6%)
Query: 69 EYDPDDHLIEEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQEE 128
E D H EEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQEE
Sbjct: 277 EQDELHHRDTEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQEE 336
Query: 129 KSGLFRNMGRNEDGERRAMITPALREALTKQ-----------------VDAPRERSLLQT 171
KSGLFRNMGRNEDGERRAMITPALREALTKQ R R
Sbjct: 337 KSGLFRNMGRNEDGERRAMITPALREALTKQGYQLIGSHSGVKLCRWTKSMLRGRGGCYK 396
Query: 172 HILWN-ESHRCMETTPSLACANKCVFCWWHHNNPVGTEWWWKMDQPEMILKEAIENHQNM 230
H + ESHRCMETTPSLACANKCVFCW HH NPVGTEW WKMDQPEMILKEAIENHQNM
Sbjct: 397 HTFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGTEWRWKMDQPEMILKEAIENHQNM 456
Query: 231 IKQFKGVPGVKAERFEEGMTVKHCALSLVGEPIMYPEINRFLKLLHQCKISSFLVTNAQF 290
IKQFKGVPGVKAERFEEGMTVKHCALSLVGEPIMYPEINRFLKLLHQCKISSFLVTNAQF
Sbjct: 457 IKQFKGVPGVKAERFEEGMTVKHCALSLVGEPIMYPEINRFLKLLHQCKISSFLVTNAQF 516
Query: 291 PAEIRNLEPVTQLYVSVDASTKDSLKKIDRPLFKDFWQQFLDSLKALAVKQQRTVYRLTL 350
PAEIRNLEPVTQLYVSVDASTKDSLKKIDRPLFKDFWQ+FLDSLKALAVKQQRTVYRLTL
Sbjct: 517 PAEIRNLEPVTQLYVSVDASTKDSLKKIDRPLFKDFWQRFLDSLKALAVKQQRTVYRLTL 576
Query: 351 VKAWNVDELQAYAQLVSLGNPDFIEVKGVTYCRESSASSLTMAHVPWHEEVVQFVRELVD 410
VKAWNVDELQAYAQLVSLGNPDFIEVKGVTYC ESSASSLTMAHVPWHEEVVQFV ELVD
Sbjct: 577 VKAWNVDELQAYAQLVSLGNPDFIEVKGVTYCGESSASSLTMAHVPWHEEVVQFVHELVD 636
Query: 411 LIPEYEIACEHEHSNCLLIAHRKTVLGGTPGHGVTEIQWEEWI 453
LIPEYEIACEHEHSNCLLIAHRK +GG +W WI
Sbjct: 637 LIPEYEIACEHEHSNCLLIAHRKFKIGG---------EWWTWI 670
Score = 134 bits (336), Expect = 2e-31
Identities = 76/125 (60%), Positives = 77/125 (61%), Gaps = 46/125 (36%)
Query: 1 MDPSADTWDLSSPLISLWINRFYIYLGFAVSISLWICVQIVIEMQ--------------- 45
MDPSADTWDL SPLISLWINRFYIYLGFAVSISLWICVQIVI+ Q
Sbjct: 1 MDPSADTWDLFSPLISLWINRFYIYLGFAVSISLWICVQIVIKTQGKNLQEKSVPKAAQD 60
Query: 46 -------------------------------GFATVLAEAVTSLDLPVAIINLKEYDPDD 74
GFATVLAEAVTSLDLPVAIINLKEYDPDD
Sbjct: 61 LMTNGYVSLQEKDIFVSGVKIFYGSQTGTAKGFATVLAEAVTSLDLPVAIINLKEYDPDD 120
Query: 75 HLIEE 79
HLIEE
Sbjct: 121 HLIEE 125
>gi|103471997 DNA-directed RNA polymerase I A [Homo sapiens]
Length = 1720
Score = 37.4 bits (85), Expect = 0.030
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 21/98 (21%)
Query: 78 EEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQEEKSGLFRNMG 137
+EEE +ES EEE GE++ D ED+ + + ++ R+ ++Q+E+ GL G
Sbjct: 1421 QEEEVDYESEEEEEREGEEN-------DDEDMQEERNPHREGARKTQEQDEEVGL----G 1469
Query: 138 RNEDGERRAMIT----------PALREALTKQVDAPRE 165
ED A++T P EA+ ++V A RE
Sbjct: 1470 TEEDPSLPALLTQPRKPTHSQEPQGPEAMERRVQAVRE 1507
>gi|21361517 UBX domain protein 1 [Homo sapiens]
Length = 312
Score = 37.0 bits (84), Expect = 0.039
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 19/147 (12%)
Query: 38 VQIVIEMQGFATVLAEAVTSLD----LPVAIINLKEYDPDDHLIEEEEEPF------ESS 87
++ +IEM GF AE +L + A+ L E++ D + E E P E +
Sbjct: 7 LESLIEM-GFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLETPLGHILGREPT 65
Query: 88 SEEEFG--------GEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQEEKSGLFRNMGRN 139
S E+ G GE +L+ E ++++ V +++RE+E++EE+ L R R
Sbjct: 66 SSEQGGLEGSGSAAGEGKPALSEEERQEQTKRMLELVAQKQREREEREEREALERERQRR 125
Query: 140 EDGERRAMITPALREALTKQVDAPRER 166
G+ + L+E ++ R R
Sbjct: 126 RQGQELSAARQRLQEDEMRRAAEERRR 152
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 35.8 bits (81), Expect = 0.086
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 57 SLDLPVAIINLKEYDPDDHLIEEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHV 116
+L+ + +IN+ D ++ EEEEE E EEE E+ + ED + +
Sbjct: 873 ALEEDLTVININSSDEEEEEEEEEEEEEEEEEEEEEDFEEEE--------EDEEEYFEEE 924
Query: 117 KKEKREKEQQ-EEKSGLFRNMGRNEDGE 143
++E+ E E++ EE+ G ED E
Sbjct: 925 EEEEEEFEEEFEEEEGELEEEEEEEDEE 952
Score = 30.0 bits (66), Expect = 4.7
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 15/159 (9%)
Query: 46 GFATVLAEAVTSLDLPVAIINLKEYDPDDHLIEEEEEP-----FESSSEEEFGGEDHQSL 100
G L E +T +++ + +E + ++ EEEEE E EEE+ E+ +
Sbjct: 869 GGPPALEEDLTVININSSDEEEEEEEEEEEEEEEEEEEEEDFEEEEEDEEEYFEEEEEEE 928
Query: 101 NSIVD--VEDLGKIMDHVKKEKREKEQQEEKSGLFRNMGRNEDGERRAMITPALREALTK 158
+ E+ G++ + ++E E+E++ E+ + E A P L AL
Sbjct: 929 EEFEEEFEEEEGELEEEEEEEDEEEEEELEEVEDLEFGTAGGEVEEGAPPPPTLPPALPP 988
Query: 159 QVDAPRERS--------LLQTHILWNESHRCMETTPSLA 189
P+ + LL+ E R +T P+LA
Sbjct: 989 PESPPKVQPEPEPEPGLLLEVEEPGTEEERGADTAPTLA 1027
>gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member A [Homo sapiens]
Length = 249
Score = 35.4 bits (80), Expect = 0.11
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 68 KEYDPDDHLIEEEEEPFESSS--EEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQ 125
+EYD D ++E+EE+ E EE+ GE+ + D E V E+ E+E
Sbjct: 177 EEYDEDAQVVEDEEDEDEEEEGEEEDVSGEEEEDEEGYNDGE--------VDDEEDEEEL 228
Query: 126 QEEKSGLFRNMGRNEDGE 143
EE+ G R ++GE
Sbjct: 229 GEEERGQKRKREPEDEGE 246
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 33.9 bits (76), Expect = 0.33
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 65 INLKEYDPDDHLIEEEEEPFESSSEEEF------GGEDHQSLNSIVDVEDLGKIMDHVKK 118
I +KE ++ EEEEE E S EEE G E + + D +D GK +D KK
Sbjct: 525 IEVKENPEEEEEEEEEEEEDEESEEEEEEEGESEGSEGDEEDEKVSDEKDSGKTLD--KK 582
Query: 119 EKREKEQQEE 128
+E E
Sbjct: 583 PSKEMSSDSE 592
Score = 31.2 bits (69), Expect = 2.1
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 68 KEYDPDDHLIEEEEEPFESSSEEEFGG--EDHQSLNSIVDVEDLGKIMDHVKKEKREKEQ 125
K+ P ++ +E EEE E+ + + + ++E K + +++EKRE+++
Sbjct: 332 KKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKRLEELEAKRKEEERLEQEKRERKK 391
Query: 126 QEEKSGLFR-----NMGRNEDGERRAMITPALREALTKQVDAPRERSLLQTHILWNESHR 180
Q+EK R + E RA L+ + V+ P + SL + ++ + R
Sbjct: 392 QKEKERKERLKKEGKLLTKSQREARARAEATLKLLQAQGVEVPSKDSLPKKRPIYEDKKR 451
Score = 30.0 bits (66), Expect = 4.7
Identities = 17/77 (22%), Positives = 39/77 (50%)
Query: 53 EAVTSLDLPVAIINLKEYDPDDHLIEEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKI 112
E S++L A+ +++ P+ EP E E+ G +D +++ S + E +
Sbjct: 462 EVSESMELCAAVEVMEQGVPEKEETPPPVEPEEEEDTEDAGLDDWEAMASDEETEKVEGN 521
Query: 113 MDHVKKEKREKEQQEEK 129
H++ ++ +E++EE+
Sbjct: 522 KVHIEVKENPEEEEEEE 538
>gi|28274705 family with sequence similarity 9, member A [Homo
sapiens]
Length = 332
Score = 33.9 bits (76), Expect = 0.33
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 48 ATVLAEAVTSLDLPVA---IINLKEYDPDDHLIEEEEEPFESSSEEEFGGEDHQSLNSIV 104
A AEA + + A +I +++ + ++ EEE+E E EEE GGE+ +
Sbjct: 197 AAAAAEAAAAAEAAAAAAEVIVVEDEEEEEKEEEEEKEEEEEEGEEEGGGEEGEEGGGGG 256
Query: 105 DVEDLGKIMDHVKKEKREKEQQEEKSGLFR 134
+ E+ + ++E+ E+E++EE+ F+
Sbjct: 257 EGEETEE-----EEEEEEEEEEEEQIKAFQ 281
>gi|4826724 zygin 1 isoform 1 [Homo sapiens]
Length = 392
Score = 33.5 bits (75), Expect = 0.43
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 73 DDHLIEEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQEEKSG 131
D + E+EEE F SE + G + L + +E++ ++M + + E+E EE+ G
Sbjct: 135 DTEIHEKEEEEFNEKSENDSGINEEPLLTADQVIEEIEEMMQNSPDPEEEEEVLEEEDG 193
>gi|15149463 caldesmon 1 isoform 4 [Homo sapiens]
Length = 558
Score = 33.1 bits (74), Expect = 0.56
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 55 VTSLDLPVAIINLKEYDPDDHLIEEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMD 114
+T L + ++ ++ E+EE+ S +E + E+ +++ D +
Sbjct: 119 ITDASLSLPSRRMQNDTAENETTEKEEK--SESRQERYEIEETETVTKSYQKNDWRDAEE 176
Query: 115 HVKKEKREKEQQEEKSGLFRNMGRNEDGERRAMITPALREALTKQVDAP 163
+ KKE +EKE++EE+ ++G N+ GE + A RE L Q D P
Sbjct: 177 N-KKEDKEKEEEEEEKPKRGSIGENQ-GEEKGTKVQAKREKL--QEDKP 221
>gi|15149467 caldesmon 1 isoform 3 [Homo sapiens]
Length = 564
Score = 33.1 bits (74), Expect = 0.56
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 55 VTSLDLPVAIINLKEYDPDDHLIEEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMD 114
+T L + ++ ++ E+EE+ S +E + E+ +++ D +
Sbjct: 125 ITDASLSLPSRRMQNDTAENETTEKEEK--SESRQERYEIEETETVTKSYQKNDWRDAEE 182
Query: 115 HVKKEKREKEQQEEKSGLFRNMGRNEDGERRAMITPALREALTKQVDAP 163
+ KKE +EKE++EE+ ++G N+ GE + A RE L Q D P
Sbjct: 183 N-KKEDKEKEEEEEEKPKRGSIGENQ-GEEKGTKVQAKREKL--QEDKP 227
>gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member E isoform 1 [Homo sapiens]
Length = 268
Score = 33.1 bits (74), Expect = 0.56
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 78 EEEEEPFESSSEEEFG-----GEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQEEKSGL 132
EEEE+ E E+E G GE+ L+ ++ E + D E+ E+E++EE+ GL
Sbjct: 191 EEEEDEDEDEDEDEAGSELGEGEEEVGLSYLMKEEIQDEEDDDDYVEEGEEEEEEEEGGL 250
Query: 133 FRNMGRNEDGE 143
R R D E
Sbjct: 251 -RGEKRKRDAE 260
>gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 2 [Homo sapiens]
Length = 227
Score = 33.1 bits (74), Expect = 0.56
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 78 EEEEEPFESSSEEEFG-----GEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQEEKSGL 132
EEEE+ E E+E G GE+ L+ ++ E + D E+ E+E++EE+ GL
Sbjct: 150 EEEEDEDEDEDEDEAGSELGEGEEEVGLSYLMKEEIQDEEDDDDYVEEGEEEEEEEEGGL 209
Query: 133 FRNMGRNEDGE 143
R R D E
Sbjct: 210 -RGEKRKRDAE 219
>gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 3 [Homo sapiens]
Length = 220
Score = 33.1 bits (74), Expect = 0.56
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 78 EEEEEPFESSSEEEFG-----GEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQEEKSGL 132
EEEE+ E E+E G GE+ L+ ++ E + D E+ E+E++EE+ GL
Sbjct: 143 EEEEDEDEDEDEDEAGSELGEGEEEVGLSYLMKEEIQDEEDDDDYVEEGEEEEEEEEGGL 202
Query: 133 FRNMGRNEDGE 143
R R D E
Sbjct: 203 -RGEKRKRDAE 212
>gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member B [Homo sapiens]
Length = 251
Score = 32.7 bits (73), Expect = 0.73
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 59 DLPVAIINLKEYDPDDHLIEEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKK 118
D + + E + D+ +EE+E E EEEF ED + + D +D D V +
Sbjct: 157 DSDAEVDGVDEEEEDEEGEDEEDEDDEDGEEEEFDEEDDEDEDVEGDEDD-----DEVSE 211
Query: 119 EKRE-----------KEQQEEKSGLFRNMGRNEDGE 143
E+ E ++++EE+ G R D E
Sbjct: 212 EEEEFGLDEEDEDEDEDEEEEEGGKGEKRKRETDDE 247
>gi|6005757 chromatin-specific transcription elongation factor large
subunit [Homo sapiens]
Length = 1047
Score = 32.3 bits (72), Expect = 0.95
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 73 DDHLIEEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQ---EEK 129
DD+ EEE+ + SSE E E S S+ E+ GK D +++E R+ +++ EE+
Sbjct: 953 DDYEEEEEDSDEDYSSEAE---ESDYSKESLGSEEESGKDWDELEEEARKADRESRYEEE 1009
Query: 130 SGLFRNMGR 138
R+M R
Sbjct: 1010 EEQSRSMSR 1018
>gi|33391150 nucleoplasmin 2 [Homo sapiens]
Length = 214
Score = 32.3 bits (72), Expect = 0.95
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 61 PVAIINLKEYDPDDHLIEEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLG---------- 110
PV + + Y+ D EEEEE E EEE ED + ++ + +E+
Sbjct: 112 PVFLSGQERYEASDLTWEEEEE--EEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVP 169
Query: 111 -KIMDHVKKEKREKEQQEEKSGL 132
K KK+K EKE++E ++ +
Sbjct: 170 QKQASVAKKKKLEKEEEEIRASV 192
>gi|21735569 claspin [Homo sapiens]
Length = 1339
Score = 32.0 bits (71), Expect = 1.2
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 67 LKEYDPDDHLIEEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQ 126
L + D +D EEEEE E + E E GE+ V+ E+ + ++ E+ EKE++
Sbjct: 619 LFKLDNEDGFEEEEEEEEEMTDESEEDGEEK------VEKEEKEEELE----EEEEKEEE 668
Query: 127 EEKSG 131
EE+ G
Sbjct: 669 EEEEG 673
>gi|24307965 UBX domain containing 2 [Homo sapiens]
Length = 508
Score = 32.0 bits (71), Expect = 1.2
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 86 SSSEEEFGGEDHQSLNSI-VDVEDLGKIMDHVKKEKREKEQQEEKSGLFRNMGRNEDGER 144
+SS+E G D + + + VE L K ++ ++EKR++E+Q E + + + R + G+
Sbjct: 178 TSSQEPSGCSDQRPAEDLNIRVERLTKKLEERREEKRKEEEQRE---IKKEIERRKTGKE 234
Query: 145 RAMITPALREALTKQVDAPRER 166
E LTK++ R R
Sbjct: 235 MLDYKRKQEEELTKRMLEERNR 256
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 32.0 bits (71), Expect = 1.2
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 72 PDDHLI----EEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQE 127
P+D LI EEEEE E EEE GE+ + ++ D K +EK E E
Sbjct: 1343 PEDDLIKPEEEEEEEEEEEEEEEEEEGEEEEGGGNVEKDPDGAK-----SQEKEEPEIST 1397
Query: 128 EKSGLFRNMGRNEDGE 143
EK R E+ E
Sbjct: 1398 EKEDSARLDDHEEEEE 1413
Score = 31.6 bits (70), Expect = 1.6
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 23/111 (20%)
Query: 67 LKEYDPDDHLIEEEEEPFESSSEEEFGG------------EDHQSLNSIVDVEDLGKIMD 114
+K + ++ EEEEE E EEE GG ++ + + ED ++ D
Sbjct: 1348 IKPEEEEEEEEEEEEEEEEEEGEEEEGGGNVEKDPDGAKSQEKEEPEISTEKEDSARLDD 1407
Query: 115 HVKKEKREKEQQEEKSGLFRNMGRNEDGERRAMITPALREALTKQVDAPRE 165
H + E+E+ EE S NED + + A ++ + PRE
Sbjct: 1408 H----EEEEEEDEEPS-------HNEDHDADDEDDSHMESAEVEKEELPRE 1447
>gi|41281571 synovial sarcoma, X breakpoint 2 interacting protein
[Homo sapiens]
Length = 614
Score = 32.0 bits (71), Expect = 1.2
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 12/135 (8%)
Query: 50 VLAEAVTSLDLPVAIINLKEYDPDDHLIEEEEEPFESSSEEEFGGEDH----------QS 99
+L V LD V+ ++L+ ++ +D + ++ E E E Q
Sbjct: 348 ILKSHVEKLDNQVSKVHLEGFNDEDVISRQDHEQETEKLELEIQQCKEMIKTQQQLLQQQ 407
Query: 100 LNSIVDVEDLGKIMDHVKKEKREKEQQEEKSGLFRNMGRNEDGERRAMITPALREALTKQ 159
L + D + + D E EKE+ +E+ LF+ +N + ERR+ A+R L ++
Sbjct: 408 LATAYDDDTTSLLRDCYLLE--EKERLKEEWSLFKEQKKNFERERRSFTEAAIRLGLERK 465
Query: 160 VDAPRERSLLQTHIL 174
S L+ L
Sbjct: 466 AFEEERASWLKQQFL 480
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 31.6 bits (70), Expect = 1.6
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 66 NLKEYDPDDHLIEEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQ 125
+L + ++ EEE E E EEE E+ + V+ E+ K KK++++KE+
Sbjct: 2242 SLSSEEEEEREEEEEREEEEVREEEEERKEEEEGEEKQVEKEEEEK---KKKKKEKKKEE 2298
Query: 126 QEEKSGLFRNMGRNEDGERRAMITPALRE----ALTKQVDAPRERSLLQ 170
+EK +F E ++ E +L ++VD RE+ +L+
Sbjct: 2299 VQEKEEVFEEKEEIMSEEETESLSDEEEEEESCSLEEEVD--REKEILK 2345
>gi|4503257 death-domain associated protein isoform a [Homo sapiens]
Length = 740
Score = 31.6 bits (70), Expect = 1.6
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 16/77 (20%)
Query: 71 DPDDHLIEEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQEEKS 130
D DD +EEEE E EEE + + EDL ++ + + ++ E E++E +
Sbjct: 437 DEDDEESDEEEEEEEEEEEEEATDSEEE--------EDLEQMQEGQEDDEEEDEEEEAAA 488
Query: 131 GLFRNMGRNEDGERRAM 147
G +DG++ M
Sbjct: 489 G--------KDGDKSPM 497
>gi|215422388 death-domain associated protein isoform a [Homo
sapiens]
Length = 740
Score = 31.6 bits (70), Expect = 1.6
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 16/77 (20%)
Query: 71 DPDDHLIEEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQEEKS 130
D DD +EEEE E EEE + + EDL ++ + + ++ E E++E +
Sbjct: 437 DEDDEESDEEEEEEEEEEEEEATDSEEE--------EDLEQMQEGQEDDEEEDEEEEAAA 488
Query: 131 GLFRNMGRNEDGERRAM 147
G +DG++ M
Sbjct: 489 G--------KDGDKSPM 497
>gi|215422366 death-domain associated protein isoform b [Homo
sapiens]
Length = 752
Score = 31.6 bits (70), Expect = 1.6
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 16/77 (20%)
Query: 71 DPDDHLIEEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQEEKS 130
D DD +EEEE E EEE + + EDL ++ + + ++ E E++E +
Sbjct: 449 DEDDEESDEEEEEEEEEEEEEATDSEEE--------EDLEQMQEGQEDDEEEDEEEEAAA 500
Query: 131 GLFRNMGRNEDGERRAM 147
G +DG++ M
Sbjct: 501 G--------KDGDKSPM 509
>gi|222136585 timeless homolog [Homo sapiens]
Length = 1208
Score = 31.6 bits (70), Expect = 1.6
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 36 ICVQIVIEMQGFATVLAEAVTSLDLPVAIINLKEYDPDDHLIEEEEEPFESSSEEEFGGE 95
+ + +V E + + + S LP +LK++ +D L EEE P E S EEE GG
Sbjct: 932 LALGLVAERRELYKKRQKKLASSILPNGAESLKDFCQED-LEEEENLPEEDSEEEEEGGS 990
Query: 96 DHQSLNS--IVDVEDLGK 111
+ + + ++ E+LG+
Sbjct: 991 EAEQVQGSLVLSNENLGQ 1008
>gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 31.6 bits (70), Expect = 1.6
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 69 EYDPDDHLIEEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQEE 128
E D ++ EEEE E +E+ G+D + S + E+ G D E +++++EE
Sbjct: 197 EKDXENEDGEEEELDEEEDEDEDVEGDDDKDEVS-EEEEEFGLDKDE-DDEDEDEDEEEE 254
Query: 129 KSGLFRNMGRNEDGE 143
+SG N R D E
Sbjct: 255 ESGKGENRKRETDDE 269
>gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 31.6 bits (70), Expect = 1.6
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 69 EYDPDDHLIEEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQEE 128
E D ++ EEEE E +E+ G+D + S + E+ G D E +++++EE
Sbjct: 197 EKDXENEDGEEEELDEEEDEDEDVEGDDDKDEVS-EEEEEFGLDKDE-DDEDEDEDEEEE 254
Query: 129 KSGLFRNMGRNEDGE 143
+SG N R D E
Sbjct: 255 ESGKGENRKRETDDE 269
>gi|169210053 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 31.6 bits (70), Expect = 1.6
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 14/59 (23%)
Query: 73 DDHLIEEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQEEKSG 131
++ +EEEEE E +EE ED + + ++EK E E++EEK G
Sbjct: 119 EEEEVEEEEEEVEEEEKEEEKEEDEEE--------------EEKEEEKEEDEEEEEKEG 163
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,287,629
Number of Sequences: 37866
Number of extensions: 829603
Number of successful extensions: 4636
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 4225
Number of HSP's gapped (non-prelim): 326
length of query: 471
length of database: 18,247,518
effective HSP length: 106
effective length of query: 365
effective length of database: 14,233,722
effective search space: 5195308530
effective search space used: 5195308530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.