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Search of human proteins with 223942032
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223942032 NECAP endocytosis associated 2 isoform 2 [Homo
sapiens]
(273 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223942032 NECAP endocytosis associated 2 isoform 2 [Homo sapi... 556 e-159
gi|8922416 NECAP endocytosis associated 2 isoform 1 [Homo sapiens] 457 e-129
gi|223942035 NECAP endocytosis associated 2 isoform 3 [Homo sapi... 392 e-109
gi|31542528 NECAP endocytosis associated 1 [Homo sapiens] 314 5e-86
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa... 38 0.008
gi|13699803 WAS protein family, member 3 [Homo sapiens] 37 0.024
gi|163965366 nascent polypeptide-associated complex alpha subuni... 37 0.024
gi|201023339 FIP1 like 1 isoform 2 [Homo sapiens] 36 0.041
gi|19924099 synapsin I isoform Ia [Homo sapiens] 36 0.041
gi|19924097 synapsin I isoform Ib [Homo sapiens] 36 0.041
gi|20143482 melanoma antigen family E, 1 [Homo sapiens] 35 0.092
gi|21071077 dishevelled-associated activator of morphogenesis 1 ... 35 0.092
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 34 0.12
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 34 0.12
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 34 0.12
gi|201023341 FIP1 like 1 isoform 3 [Homo sapiens] 34 0.16
gi|40254978 FIP1 like 1 isoform 1 [Homo sapiens] 34 0.16
gi|156104872 Ets2 repressor factor [Homo sapiens] 34 0.16
gi|157168329 formin 1 [Homo sapiens] 33 0.27
gi|239755509 PREDICTED: hypothetical protein [Homo sapiens] 33 0.27
gi|239750019 PREDICTED: hypothetical protein [Homo sapiens] 33 0.27
gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo ... 33 0.27
gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens] 33 0.27
gi|4502249 ArfGAP with SH3 domain, ankyrin repeat and PH domain ... 33 0.27
gi|125628665 hypothetical protein LOC388284 [Homo sapiens] 33 0.35
gi|98986457 host cell factor 1 [Homo sapiens] 32 0.46
gi|150170670 piccolo isoform 2 [Homo sapiens] 32 0.46
gi|150378539 piccolo isoform 1 [Homo sapiens] 32 0.46
gi|148612811 ubiquitin specific protease 43 [Homo sapiens] 32 0.46
gi|112421108 capicua homolog [Homo sapiens] 32 0.46
>gi|223942032 NECAP endocytosis associated 2 isoform 2 [Homo
sapiens]
Length = 273
Score = 556 bits (1434), Expect = e-159
Identities = 273/273 (100%), Positives = 273/273 (100%)
Query: 1 MEESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLE 60
MEESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLE
Sbjct: 1 MEESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLE 60
Query: 61 DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV 120
DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV
Sbjct: 61 DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV 120
Query: 121 ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPA 180
ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPA
Sbjct: 121 ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPA 180
Query: 181 STGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSDQLPARPSQAQAGSSSDL 240
STGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSDQLPARPSQAQAGSSSDL
Sbjct: 181 STGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSDQLPARPSQAQAGSSSDL 240
Query: 241 STVFPHVTSGKALPHLGQRKEDEALLSWPVFGA 273
STVFPHVTSGKALPHLGQRKEDEALLSWPVFGA
Sbjct: 241 STVFPHVTSGKALPHLGQRKEDEALLSWPVFGA 273
>gi|8922416 NECAP endocytosis associated 2 isoform 1 [Homo sapiens]
Length = 263
Score = 457 bits (1176), Expect = e-129
Identities = 232/260 (89%), Positives = 235/260 (90%), Gaps = 4/260 (1%)
Query: 1 MEESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLE 60
MEESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLE
Sbjct: 1 MEESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLE 60
Query: 61 DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV 120
DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV
Sbjct: 61 DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNV 120
Query: 121 ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPA 180
ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPA
Sbjct: 121 ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPA 180
Query: 181 STGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSDQLPA---RPSQAQAGSS 237
STGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSS P +P+ A A
Sbjct: 181 STGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSGGAPVPWPQPNPATADIW 240
Query: 238 SDLSTVFPHVTSGKALPHLG 257
D T TS + P G
Sbjct: 241 GDF-TKSTGSTSSQTQPGTG 259
>gi|223942035 NECAP endocytosis associated 2 isoform 3 [Homo
sapiens]
Length = 237
Score = 392 bits (1007), Expect = e-109
Identities = 201/229 (87%), Positives = 204/229 (89%), Gaps = 4/229 (1%)
Query: 32 AAEWQLDQPSWSGRLRITAKGQMAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYF 91
AAEWQLDQPSWSGRLRITAKGQMAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYF
Sbjct: 6 AAEWQLDQPSWSGRLRITAKGQMAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYF 65
Query: 92 VIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLG 151
VIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLG
Sbjct: 66 VIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLG 125
Query: 152 FKEGQTIKLNIANMKKKEGAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGG 211
FKEGQTIKLNIANMKKKEGAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGG
Sbjct: 126 FKEGQTIKLNIANMKKKEGAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGG 185
Query: 212 SLVQPAVAPSSDQLPA---RPSQAQAGSSSDLSTVFPHVTSGKALPHLG 257
SLVQPAVAPSS P +P+ A A D T TS + P G
Sbjct: 186 SLVQPAVAPSSGGAPVPWPQPNPATADIWGDF-TKSTGSTSSQTQPGTG 233
>gi|31542528 NECAP endocytosis associated 1 [Homo sapiens]
Length = 275
Score = 314 bits (805), Expect = 5e-86
Identities = 153/220 (69%), Positives = 178/220 (80%), Gaps = 4/220 (1%)
Query: 3 ESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLEDR 62
E YESVLCVKPDV VYRIPPRA+NRGYRA++W+LDQP W+GRLRIT+KG+ AYIKLED+
Sbjct: 4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDK 63
Query: 63 TSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVAL 122
SGELFAQAPV+Q+PG AVE+VTDSSRYFVIRI+DG GR AFIGIGF DRGDAFDFNV+L
Sbjct: 64 VSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSL 123
Query: 123 QDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPAST 182
QDHFKWVKQ+ E +K++Q D PKLDLGFKEGQTIKL I N+ K+G A PR A
Sbjct: 124 QDHFKWVKQESEISKESQEMDARPKLDLGFKEGQTIKLCIGNITNKKGGASKPRT--ARG 181
Query: 183 GGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSS 222
GGLSLLPPPPGGK + IPPP +A+ + P + S+
Sbjct: 182 GGLSLLPPPPGGKVT--IPPPSSSVAISNHVTPPPIPKSN 219
>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
sapiens]
Length = 402
Score = 38.1 bits (87), Expect = 0.008
Identities = 30/86 (34%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 169 EGAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSDQLPAR 228
EG G R R A +G P PP T PPPGE V + P P P
Sbjct: 4 EGGHGGSRCRGAESGDAEPPPQPPPPPPPT--PPPGEPAPVPAA---PRYLPPLPASPET 58
Query: 229 PSQAQAGSSSDLSTVFPHVTSGKALP 254
P +A AG S L V P LP
Sbjct: 59 PERA-AGPSEPLGEVAPRCRGADELP 83
>gi|13699803 WAS protein family, member 3 [Homo sapiens]
Length = 502
Score = 36.6 bits (83), Expect = 0.024
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 179 PASTGGLSLLPPPPGGKTSTLIPP-PGEQLAVGGSLVQPAVAPSSDQLPARPSQAQAGSS 237
P STG L PPPPG PP PG L+ + P VA + Q PA+P + A S
Sbjct: 385 PPSTGLLVTAPPPPGPPPPPPGPPGPGSSLS-SSPMHGPPVAEAKRQEPAQPPISDARSD 443
Query: 238 SDLSTVFPHVTSGKALPHLGQRKEDEA 264
+ + G L + +++E EA
Sbjct: 444 -----LLAAIRMGIQLKKVQEQREQEA 465
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 36.6 bits (83), Expect = 0.024
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 169 EGAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSDQLPAR 228
+GA P P S G PPP G T + PP + G+ PA PSS P
Sbjct: 1307 KGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPK----GTPTLPATTPSSKGGPTT 1362
Query: 229 PSQAQ 233
PS +
Sbjct: 1363 PSSKE 1367
Score = 31.2 bits (69), Expect = 1.0
Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 169 EGAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPP---GEQLAV---GGSLVQPAVAPSS 222
+GA P P S G P P G T + PP G A G+ PA P S
Sbjct: 983 KGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPS 1042
Query: 223 DQLPARPSQAQAGSSSDLSTVFPHVTSGKALPHL 256
+ + G+ + + P G A P L
Sbjct: 1043 PKGSPAATPLPKGAPTTPAATLPSPKGGPATPSL 1076
Score = 29.6 bits (65), Expect = 3.0
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 169 EGAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVG-----GSLVQPAVAPSSD 223
+GA V P S G PP G T PP + + G G+ PAV P S
Sbjct: 1284 KGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSP 1343
Query: 224 Q----LPARPSQAQAGSSSDLSTVFP 245
+ LPA ++ G ++ S P
Sbjct: 1344 KGTPTLPATTPSSKGGPTTPSSKEGP 1369
Score = 29.3 bits (64), Expect = 3.9
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 169 EGAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVG-----GSLVQPAVAPSS 222
+GA P P S G PPP G T+ PP + + G+ PA P S
Sbjct: 1123 KGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPS 1181
Score = 28.9 bits (63), Expect = 5.0
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 168 KEGAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAP-SSDQLP 226
KEG P P+ GG ++ PP P K IP P G PAV P S + P
Sbjct: 1366 KEGPTP-PAATPSHKGGPAMTPPSP--KRGPAIPSP------KGDPTSPAVIPLSPKKAP 1416
Query: 227 ARPSQAQAGSSSDLSTVFP 245
A P + ++ + P
Sbjct: 1417 ATPVTREGAATPSKGDLTP 1435
Score = 28.1 bits (61), Expect = 8.6
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 169 EGAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVG-----GSLVQPAVAPSSD 223
+GA P P S G P P G T+ PP + + G+ PA P S
Sbjct: 1192 KGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSP 1251
Query: 224 Q-LPARPSQAQAGSSSDLSTVFPHVTSGKALP 254
+ PA P G+ + + P + G A P
Sbjct: 1252 KGGPATP--PPKGAPTPPAATPPSLKGGLATP 1281
Score = 28.1 bits (61), Expect = 8.6
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 169 EGAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSDQLPAR 228
+GA P P S G PPP G T PP ++ G L P + +
Sbjct: 1238 KGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPP----SLKGGLATPPHKGAPNPAVVT 1293
Query: 229 PSQAQAGSSS 238
P + G ++
Sbjct: 1294 PPSPKGGPAT 1303
>gi|201023339 FIP1 like 1 isoform 2 [Homo sapiens]
Length = 588
Score = 35.8 bits (81), Expect = 0.041
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 188 LPPPPGGKTST-LIPPPGEQLAV-GGSLVQPAVAPSSDQLPARPSQAQAGSSSDLSTVFP 245
LPPPP T+ LIPPPG + V P AP +P S +G S + FP
Sbjct: 360 LPPPPTVSTAPPLIPPPGIPITVPPPGFPPPPGAPPPSLIPTIESGHSSGYDSRSARAFP 419
Query: 246 HVTSGKALPHL 256
+ A PHL
Sbjct: 420 Y--GNVAFPHL 428
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 35.8 bits (81), Expect = 0.041
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 189 PPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSDQLPARPSQAQAGSSSDLSTVFPHVT 248
PPPPG + P PG A S V PA +P++ P+ S G S LS T
Sbjct: 32 PPPPGAHSPGATPGPGTATAERSSGVAPAASPAA---PSPGSSGGGGFFSSLSNAVKQTT 88
Query: 249 SGKA 252
+ A
Sbjct: 89 AAAA 92
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 35.8 bits (81), Expect = 0.041
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 189 PPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSDQLPARPSQAQAGSSSDLSTVFPHVT 248
PPPPG + P PG A S V PA +P++ P+ S G S LS T
Sbjct: 32 PPPPGAHSPGATPGPGTATAERSSGVAPAASPAA---PSPGSSGGGGFFSSLSNAVKQTT 88
Query: 249 SGKA 252
+ A
Sbjct: 89 AAAA 92
Score = 30.8 bits (68), Expect = 1.3
Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 13/97 (13%)
Query: 137 KQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPASTGGLSLLPPPPGGKT 196
+Q Q P Q P G T + + A + G + RP+ G P K
Sbjct: 585 QQRQGPPQKPP----GPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKP 640
Query: 197 STLIPPPGEQLAVGGSLVQPAVAPSSDQLPARPSQAQ 233
S +PPP A G P QL A P+QAQ
Sbjct: 641 SQDVPPPATAAAGG---------PPHPQLKASPAQAQ 668
>gi|20143482 melanoma antigen family E, 1 [Homo sapiens]
Length = 957
Score = 34.7 bits (78), Expect = 0.092
Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 20/100 (20%)
Query: 142 PDQGPKLDL--GFKEGQTIKLNIANMKKKEGAAGNPRVRPASTGGLSL------------ 187
P +GP + +GQ+I L G + V P +T GLS
Sbjct: 264 PGEGPSTSVLPAASDGQSISL-----VPTRGKGSSTSVPPTATEGLSTSVQPTAGEGSST 318
Query: 188 -LPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSDQLP 226
+PP PGG ST +PP + P PS+ LP
Sbjct: 319 SVPPTPGGGLSTSVPPTATEELSTSVPPTPGEGPSTSVLP 358
Score = 34.7 bits (78), Expect = 0.092
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 170 GAAGNPRVRPASTGGLSL-LPPPPG-GKTSTLIPPPGEQLAVGGSLVQPAVAPSSD-QLP 226
G + V P +T LS +PP PG G +++++P PGE L+ V P + SD +P
Sbjct: 325 GGGLSTSVPPTATEELSTSVPPTPGEGPSTSVLPIPGEGLSTS---VPPTASDGSDTSVP 381
Query: 227 ARPSQAQAGSSSDLSTVFPHVTSGKALPHLGQ 258
P + G+S+ + P LP+ G+
Sbjct: 382 PTPGE---GASTLVQPTAPDGPGSSVLPNPGE 410
Score = 32.0 bits (71), Expect = 0.59
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 188 LPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSDQLPARPSQAQAGSSSDLSTVFPHV 247
LPP PG TST +PP + + P PS+ LP P + G+S L+
Sbjct: 164 LPPTPGEGTSTSVPPTAYEGPSTSVVPTPDEGPSTSVLPT-PGEG-PGTSVPLAATEGLS 221
Query: 248 TSGKALPHLG 257
TS +A P G
Sbjct: 222 TSVQATPDEG 231
Score = 28.1 bits (61), Expect = 8.6
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 142 PDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPASTGGLSLLPPPPGGKTSTLIP 201
PD+GP + + + + + EG + + P S+LP G++ +L+P
Sbjct: 228 PDEGPSTSVPPTATEGLSTPVPPTRD-EGPSTSVPATPGEGPSTSVLPAASDGQSISLVP 286
Query: 202 PPGEQLAVGGSLVQPAVAPSSDQLPARPSQAQAGSSS 238
G+ G S P A +P+ + S+S
Sbjct: 287 TRGK----GSSTSVPPTATEGLSTSVQPTAGEGSSTS 319
>gi|21071077 dishevelled-associated activator of morphogenesis 1
[Homo sapiens]
Length = 1078
Score = 34.7 bits (78), Expect = 0.092
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 170 GAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSDQLP 226
GA G P P+S G L PPPP ++PPP L GG P P +P
Sbjct: 534 GAPGGPF--PSSVPGSLLPPPPPPPLPGGMLPPPPPPLPPGGPPPPPGPPPLGAIMP 588
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 34.3 bits (77), Expect = 0.12
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 179 PASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSDQLPARP 229
P+ GG ++ PPPP +T+ PPP L G + P+ P +P P
Sbjct: 622 PSLPGGTAISPPPPLSGDATIPPPP--PLPEGVGIPSPSSLPGGTAIPPPP 670
Score = 31.2 bits (69), Expect = 1.0
Identities = 18/60 (30%), Positives = 23/60 (38%)
Query: 170 GAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSDQLPARP 229
G+A P P G + PPPP +PPP L G + P P +P P
Sbjct: 674 GSARIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLPGGPGIPPPPPFPGGPGIPPPP 733
Score = 30.0 bits (66), Expect = 2.3
Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 179 PASTGGLSLLPPPPGGKTSTLIPPPGEQL-AVGGSLVQPAVAPSSDQLPARPSQAQAGSS 237
P+S G + +PPPP S IPPP L G P P +P P G
Sbjct: 657 PSSLPGGTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLPGGPG 716
Query: 238 SDLSTVFP 245
FP
Sbjct: 717 IPPPPPFP 724
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 34.3 bits (77), Expect = 0.12
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 179 PASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSDQLPARP 229
P+ GG ++ PPPP +T+ PPP L G + P+ P +P P
Sbjct: 631 PSLPGGTAISPPPPLSGDATIPPPP--PLPEGVGIPSPSSLPGGTAIPPPP 679
Score = 31.2 bits (69), Expect = 1.0
Identities = 18/60 (30%), Positives = 23/60 (38%)
Query: 170 GAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSDQLPARP 229
G+A P P G + PPPP +PPP L G + P P +P P
Sbjct: 683 GSARIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLPGGPGIPPPPPFPGGPGIPPPP 742
Score = 30.0 bits (66), Expect = 2.3
Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 179 PASTGGLSLLPPPPGGKTSTLIPPPGEQL-AVGGSLVQPAVAPSSDQLPARPSQAQAGSS 237
P+S G + +PPPP S IPPP L G P P +P P G
Sbjct: 666 PSSLPGGTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLPGGPG 725
Query: 238 SDLSTVFP 245
FP
Sbjct: 726 IPPPPPFP 733
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 34.3 bits (77), Expect = 0.12
Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 170 GAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSDQLPARP 229
G G P P +TG LPPPP G +PPP P PSS PA P
Sbjct: 363 GRGGPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPP---------PPPPPPSSGNGPAPP 413
>gi|201023341 FIP1 like 1 isoform 3 [Homo sapiens]
Length = 520
Score = 33.9 bits (76), Expect = 0.16
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 188 LPPPPGGKTST-LIPPPGEQLAVGGSLVQPAVAPSSDQLPARPSQAQAGSSSDLSTVFPH 246
LPPPP T+ LIPPPG P AP +P S +G S + FP+
Sbjct: 301 LPPPPTVSTAPPLIPPPG--------FPPPPGAPPPSLIPTIESGHSSGYDSRSARAFPY 352
Query: 247 VTSGKALPHL 256
A PHL
Sbjct: 353 --GNVAFPHL 360
>gi|40254978 FIP1 like 1 isoform 1 [Homo sapiens]
Length = 594
Score = 33.9 bits (76), Expect = 0.16
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 188 LPPPPGGKTST-LIPPPGEQLAVGGSLVQPAVAPSSDQLPARPSQAQAGSSSDLSTVFPH 246
LPPPP T+ LIPPPG P AP +P S +G S + FP+
Sbjct: 375 LPPPPTVSTAPPLIPPPG--------FPPPPGAPPPSLIPTIESGHSSGYDSRSARAFPY 426
Query: 247 VTSGKALPHL 256
A PHL
Sbjct: 427 --GNVAFPHL 434
>gi|156104872 Ets2 repressor factor [Homo sapiens]
Length = 548
Score = 33.9 bits (76), Expect = 0.16
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 173 GNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSDQLPARPSQA 232
G P R G+ + P P G L P P LA GSL+ P ++P+ LP P+
Sbjct: 219 GPPLARLPHDPGVFRVYPRPRGGPEPLSPFPVSPLAGPGSLLPPQLSPA---LPMTPTHL 275
Query: 233 QAGSSSDLSTVFP 245
S LS ++P
Sbjct: 276 AYTPSPTLSPMYP 288
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 33.1 bits (74), Expect = 0.27
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 179 PASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQ----PAVAPSSDQLPARPSQAQA 234
P + GG PPPPG PPPG +G S Q PA+ PS P ++ Q
Sbjct: 713 PPNPGGPPPAPPPPGLAPP---PPPGLFFGLGSSSSQCPRKPAIEPSCPMKPLYWTRIQI 769
Query: 235 GSSSDLSTVFPHVTSGKALPHLGQRKEDEALLS 267
S +T P + P + E E L S
Sbjct: 770 SDRSQNAT--PTLWDSLEEPDIRDPSEFEYLFS 800
>gi|239755509 PREDICTED: hypothetical protein [Homo sapiens]
Length = 344
Score = 33.1 bits (74), Expect = 0.27
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 170 GAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAV------APSSD 223
G A PR RP G+S PP P + P PG+ G PA P SD
Sbjct: 257 GLARAPRARPRDPAGVSRAPPRP--RPHPASPAPGDGALRGAEATAPAALGLVQPRPKSD 314
Query: 224 QLPARPSQAQAGSSSDL 240
+ + P + +A S +L
Sbjct: 315 -IDSPPPRGRAAPSKEL 330
>gi|239750019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 344
Score = 33.1 bits (74), Expect = 0.27
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 170 GAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAV------APSSD 223
G A PR RP G+S PP P + P PG+ G PA P SD
Sbjct: 257 GLARAPRARPRDPAGVSRAPPRP--RPHPASPAPGDGALRGAEATAPAALGLVQPRPKSD 314
Query: 224 QLPARPSQAQAGSSSDL 240
+ + P + +A S +L
Sbjct: 315 -IDSPPPRGRAAPSKEL 330
>gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo
sapiens]
Length = 344
Score = 33.1 bits (74), Expect = 0.27
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 170 GAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAV------APSSD 223
G A PR RP G+S PP P + P PG+ G PA P SD
Sbjct: 257 GLARAPRARPRDPAGVSRAPPRP--RPHPASPAPGDGALRGAEATAPAALGLVQPRPKSD 314
Query: 224 QLPARPSQAQAGSSSDL 240
+ + P + +A S +L
Sbjct: 315 -IDSPPPRGRAAPSKEL 330
>gi|40807475 PML-RARA regulated adaptor molecule 1 [Homo sapiens]
Length = 669
Score = 33.1 bits (74), Expect = 0.27
Identities = 34/135 (25%), Positives = 50/135 (37%), Gaps = 16/135 (11%)
Query: 121 ALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPA 180
A++ H + + +F P PK + G+ K + + + A P
Sbjct: 8 AMESHQDFRSIKAKFQASQPEPSDLPKKPPKPEFGKLKKFSQPELSEHPKKAPLPEF--- 64
Query: 181 STGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVA--------PSSDQLPARPSQA 232
G +SL PPPP PPP E + P V P LP +PS+
Sbjct: 65 --GAVSLKPPPPEVTDLPKKPPPPEVTDLPKKPPPPEVTDLPKKPPPPEVTDLPKKPSKL 122
Query: 233 QAGSSSDLSTVFPHV 247
+ SDLS FP +
Sbjct: 123 EL---SDLSKKFPQL 134
>gi|4502249 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
isoform a [Homo sapiens]
Length = 1006
Score = 33.1 bits (74), Expect = 0.27
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 175 PRVRPASTGGLSLLPPPPGGKTSTL---IPPPGEQLAVGGSLVQPAVAPSSDQLPARPSQ 231
P +R ST L+ PPPP KT ++ + P + G S ++P P Q P+R Q
Sbjct: 832 PPLRVTSTNPLTPTPPPPVAKTPSVMEALSQPSKPAPPGISQIRP--PPLPPQPPSRLPQ 889
Query: 232 AQAGSSSDLST 242
+ +D ST
Sbjct: 890 KKPAPGADKST 900
>gi|125628665 hypothetical protein LOC388284 [Homo sapiens]
Length = 317
Score = 32.7 bits (73), Expect = 0.35
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 170 GAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSDQLPARP 229
GA P V+ A+ G L PG ++ P G+Q V + S DQ P
Sbjct: 5 GAERRPGVQEATVVGQGQLTEEPGSAQTSECPVAGDQFLVPAH--EARGTQSEDQRP--- 59
Query: 230 SQAQAGSSSDLSTVFPHVTSGKALPHLGQRKE 261
A A S S+L P + + PH G +E
Sbjct: 60 --AGAASESELQEEGPKLGEERPKPHAGALEE 89
>gi|98986457 host cell factor 1 [Homo sapiens]
Length = 2035
Score = 32.3 bits (72), Expect = 0.46
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 166 KKKEGAAGNPRVRPASTGGLSLL----PPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPS 221
K AA P V+P + G++LL P PP T ++P V GS + A
Sbjct: 426 KSPAPAAAAPAVQPLTQVGITLLPQAAPAPPTTTTIQVLP------TVPGSSISVPTAAR 479
Query: 222 SDQLPA--RPSQAQAGSSSDLSTVFPHVTSGKA 252
+ +PA + + QA + + L T+ P +GKA
Sbjct: 480 TQGVPAVLKVTGPQATTGTPLVTMRPASQAGKA 512
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 32.3 bits (72), Expect = 0.46
Identities = 51/199 (25%), Positives = 76/199 (38%), Gaps = 30/199 (15%)
Query: 69 AQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKW 128
AQ P P D +Y D +G + GIG G + D N+A HF +
Sbjct: 2955 AQQPATTLPEDRFGYRDDHYQY------DRSGPYGYRGIG-GMKPSMSDTNLAEAGHFFY 3007
Query: 129 VKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPASTG-GLSL 187
+K A + +G + G+ + + K P R +G G+S
Sbjct: 3008 K------SKNAFDYSEGTDTAVDLTSGRVTTGEVMDYSSKT-TGPYPETRQVISGAGIST 3060
Query: 188 LPPPPGGKTSTLIPPPGEQLAVGGSL------VQPAVA---PSSDQLPARPSQAQAGSSS 238
P T+ + PPPG Q VG L V +VA PS+ + +P + +
Sbjct: 3061 ----PQYSTARMTPPPGPQYCVGSVLRSSNGVVYSSVATPTPSTFAITTQPGSIFSTTVR 3116
Query: 239 DLSTVF--PHVTSGKALPH 255
DLS + VTS A+ H
Sbjct: 3117 DLSGIHTADAVTSLPAMHH 3135
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 32.3 bits (72), Expect = 0.46
Identities = 51/199 (25%), Positives = 76/199 (38%), Gaps = 30/199 (15%)
Query: 69 AQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKW 128
AQ P P D +Y D +G + GIG G + D N+A HF +
Sbjct: 2955 AQQPATTLPEDRFGYRDDHYQY------DRSGPYGYRGIG-GMKPSMSDTNLAEAGHFFY 3007
Query: 129 VKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPASTG-GLSL 187
+K A + +G + G+ + + K P R +G G+S
Sbjct: 3008 K------SKNAFDYSEGTDTAVDLTSGRVTTGEVMDYSSKT-TGPYPETRQVISGAGIST 3060
Query: 188 LPPPPGGKTSTLIPPPGEQLAVGGSL------VQPAVA---PSSDQLPARPSQAQAGSSS 238
P T+ + PPPG Q VG L V +VA PS+ + +P + +
Sbjct: 3061 ----PQYSTARMTPPPGPQYCVGSVLRSSNGVVYSSVATPTPSTFAITTQPGSIFSTTVR 3116
Query: 239 DLSTVF--PHVTSGKALPH 255
DLS + VTS A+ H
Sbjct: 3117 DLSGIHTADAVTSLPAMHH 3135
>gi|148612811 ubiquitin specific protease 43 [Homo sapiens]
Length = 1123
Score = 32.3 bits (72), Expect = 0.46
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
Query: 166 KKKEGAAGNPRVRPAS--TGGLS--LLPPPPGGKTSTLIPPPGEQLAVG-GSLVQPAV-- 218
++ E A +P+V P S +GGLS + PG + IP E LA G GS ++ V
Sbjct: 1009 RRNERAEVSPQVPPVSLVSGGLSPAMDGQAPGSPPALRIP---EGLARGLGSRLERDVWS 1065
Query: 219 APSSDQLPARPSQAQAGSSSDLS 241
APSS +LP + S+A GS+ +S
Sbjct: 1066 APSSLRLPRKASRAPRGSALGMS 1088
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 32.3 bits (72), Expect = 0.46
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 176 RVRPASTGGL-----SLLPPPPGGKTSTL----IPPPGEQLAVGGSLVQPAVAPS-SDQL 225
R RP S GGL S++ PP G + L +PP E+ GG+ V A APS +
Sbjct: 600 RKRPESVGGLEPPGPSVIAAPPSGGGNILQTLVLPPNKEEQEGGGARVPSAPAPSLAYGA 659
Query: 226 PARPSQAQAGS 236
PA P A +
Sbjct: 660 PAAPLSRPAAT 670
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,648,301
Number of Sequences: 37866
Number of extensions: 683960
Number of successful extensions: 3088
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 167
Number of HSP's that attempted gapping in prelim test: 2706
Number of HSP's gapped (non-prelim): 472
length of query: 273
length of database: 18,247,518
effective HSP length: 101
effective length of query: 172
effective length of database: 14,423,052
effective search space: 2480764944
effective search space used: 2480764944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.