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Search of human proteins with 223718151
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223718151 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 2 [Homo sapiens]
(158 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223718151 leucine rich transmembrane and 0-methyltransferase ... 322 6e-89
gi|21687175 leucine rich transmembrane and 0-methyltransferase d... 296 6e-81
gi|206725447 leucine rich repeat containing 23 isoform a [Homo s... 55 2e-08
gi|42542396 leucine rich repeat containing 23 isoform a [Homo sa... 55 2e-08
gi|39930571 leucine rich repeat containing 56 [Homo sapiens] 44 6e-05
gi|66472382 nischarin [Homo sapiens] 43 1e-04
gi|194272228 leucine rich repeat containing 48 isoform b [Homo s... 42 2e-04
gi|194272226 leucine rich repeat containing 48 isoform b [Homo s... 42 2e-04
gi|194272224 leucine rich repeat containing 48 isoform a [Homo s... 42 2e-04
gi|194272222 leucine rich repeat containing 48 isoform a [Homo s... 42 2e-04
gi|109150416 peroxidasin [Homo sapiens] 40 8e-04
gi|4826651 hypothetical protein LOC755 [Homo sapiens] 39 0.002
gi|157785649 leucine-rich repeats and IQ motif containing 3 [Hom... 39 0.002
gi|164607156 axonemal dynein light chain 1 [Homo sapiens] 38 0.003
gi|239752702 PREDICTED: leucine rich repeat containing 38, parti... 37 0.009
gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo ... 37 0.009
gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo ... 37 0.009
gi|46397373 leucine rich repeat containing 20 isoform 2 [Homo sa... 37 0.009
gi|46397369 leucine rich repeat containing 20 isoform 1 [Homo sa... 36 0.012
gi|239735605 leucine rich repeat containing 36 isoform 1 [Homo s... 36 0.016
gi|239752518 PREDICTED: similar to leucine rich repeat containin... 36 0.016
gi|37221175 PH domain and leucine rich repeat protein phosphatas... 36 0.016
gi|55743114 leucine rich repeat containing 49 [Homo sapiens] 36 0.016
gi|15529980 leucine rich repeat containing 46 [Homo sapiens] 36 0.016
gi|148664188 leucine rich repeat containing 43 isoform 2 [Homo s... 35 0.027
gi|148664213 leucine rich repeat containing 43 isoform 1 [Homo s... 35 0.027
gi|63003903 leucine rich repeat containing 10 [Homo sapiens] 35 0.035
gi|218931217 leucine rich repeat containing 61 [Homo sapiens] 35 0.035
gi|13027616 leucine rich repeat containing 61 [Homo sapiens] 35 0.035
gi|21361633 leucine rich repeat containing 40 [Homo sapiens] 35 0.035
>gi|223718151 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 2 [Homo sapiens]
Length = 158
Score = 322 bits (826), Expect = 6e-89
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MNKRDYMNTSVQEPPLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNV 60
MNKRDYMNTSVQEPPLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNV
Sbjct: 1 MNKRDYMNTSVQEPPLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNV 60
Query: 61 LNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEV 120
LNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEV
Sbjct: 61 LNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEV 120
Query: 121 NKLAVLPRLRSLTLHGNPMEEEKGYRVPGSVEMPHRPP 158
NKLAVLPRLRSLTLHGNPMEEEKGYRVPGSVEMPHRPP
Sbjct: 121 NKLAVLPRLRSLTLHGNPMEEEKGYRVPGSVEMPHRPP 158
>gi|21687175 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 1 [Homo sapiens]
Length = 192
Score = 296 bits (757), Expect = 6e-81
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MNKRDYMNTSVQEPPLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNV 60
MNKRDYMNTSVQEPPLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNV
Sbjct: 1 MNKRDYMNTSVQEPPLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNV 60
Query: 61 LNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEV 120
LNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEV
Sbjct: 61 LNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEV 120
Query: 121 NKLAVLPRLRSLTLHGNPMEEEKGYR 146
NKLAVLPRLRSLTLHGNPMEEEKGYR
Sbjct: 121 NKLAVLPRLRSLTLHGNPMEEEKGYR 146
>gi|206725447 leucine rich repeat containing 23 isoform a [Homo
sapiens]
Length = 343
Score = 55.1 bits (131), Expect = 2e-08
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 16 LDYSFRSIHVIQDLVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNVLNDLRDFNQVASQL- 74
L+ SIH++ L +P + G L +L +N L +L + ++
Sbjct: 160 LNLKGNSIHMVTGL---DPEKLISLHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVE 216
Query: 75 -LEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLT 133
LE NL + L N + ++ +L L L GN + LGE+ KL LP+LR+L
Sbjct: 217 GLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALV 276
Query: 134 LHGNPMEEEKGYRVPGSVEMPH 155
L NP +E YR V+MP+
Sbjct: 277 LLDNPCTDETSYRQEALVQMPY 298
>gi|42542396 leucine rich repeat containing 23 isoform a [Homo
sapiens]
Length = 343
Score = 55.1 bits (131), Expect = 2e-08
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 16 LDYSFRSIHVIQDLVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNVLNDLRDFNQVASQL- 74
L+ SIH++ L +P + G L +L +N L +L + ++
Sbjct: 160 LNLKGNSIHMVTGL---DPEKLISLHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVE 216
Query: 75 -LEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLT 133
LE NL + L N + ++ +L L L GN + LGE+ KL LP+LR+L
Sbjct: 217 GLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALV 276
Query: 134 LHGNPMEEEKGYRVPGSVEMPH 155
L NP +E YR V+MP+
Sbjct: 277 LLDNPCTDETSYRQEALVQMPY 298
>gi|39930571 leucine rich repeat containing 56 [Homo sapiens]
Length = 542
Score = 43.9 bits (102), Expect = 6e-05
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 52 QSLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHG 111
Q LWL L DL + + L + S+N+++ + P L L VL L G
Sbjct: 119 QVLWLARCGLADLDGIASLPA--------LKELYASYNNISDLSP-LCLLEQLEVLDLEG 169
Query: 112 NSIQRLGEVNKLAVLPRLRSLTLHGN 137
NS++ LG+V L + PRL LTL GN
Sbjct: 170 NSVEDLGQVRYLQLCPRLAMLTLEGN 195
>gi|66472382 nischarin [Homo sapiens]
Length = 1504
Score = 42.7 bits (99), Expect = 1e-04
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 75 LEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLTL 134
L+H NL +DLS+N L+S++ + T N+ L L GN ++ L ++KL L +L L
Sbjct: 328 LQHLYNLVHLDLSYNKLSSLEGLHTKLGNIKTLNLAGNLLESLSGLHKLY---SLVNLDL 384
Query: 135 HGNPMEEEKGYRVPGSV 151
N +E+ + R GS+
Sbjct: 385 RDNRIEQMEEVRSIGSL 401
>gi|194272228 leucine rich repeat containing 48 isoform b [Homo
sapiens]
Length = 457
Score = 42.0 bits (97), Expect = 2e-04
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 12/89 (13%)
Query: 52 QSLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHG 111
+ L L+NN++ + LE+ +L W+DLSFN++ +I+ L T NL L L
Sbjct: 68 RKLQLDNNIIEKIEG--------LENLAHLVWLDLSFNNIETIEG-LDTLVNLEDLSLFN 118
Query: 112 NSIQRLGEVNKLAVLPRLRSLTLHGNPME 140
N R+ +++ L L +L+ L+L N ++
Sbjct: 119 N---RISKIDSLDALVKLQVLSLGNNRID 144
>gi|194272226 leucine rich repeat containing 48 isoform b [Homo
sapiens]
Length = 457
Score = 42.0 bits (97), Expect = 2e-04
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 12/89 (13%)
Query: 52 QSLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHG 111
+ L L+NN++ + LE+ +L W+DLSFN++ +I+ L T NL L L
Sbjct: 68 RKLQLDNNIIEKIEG--------LENLAHLVWLDLSFNNIETIEG-LDTLVNLEDLSLFN 118
Query: 112 NSIQRLGEVNKLAVLPRLRSLTLHGNPME 140
N R+ +++ L L +L+ L+L N ++
Sbjct: 119 N---RISKIDSLDALVKLQVLSLGNNRID 144
>gi|194272224 leucine rich repeat containing 48 isoform a [Homo
sapiens]
Length = 523
Score = 42.0 bits (97), Expect = 2e-04
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 12/89 (13%)
Query: 52 QSLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHG 111
+ L L+NN++ + LE+ +L W+DLSFN++ +I+ L T NL L L
Sbjct: 68 RKLQLDNNIIEKIEG--------LENLAHLVWLDLSFNNIETIEG-LDTLVNLEDLSLFN 118
Query: 112 NSIQRLGEVNKLAVLPRLRSLTLHGNPME 140
N R+ +++ L L +L+ L+L N ++
Sbjct: 119 N---RISKIDSLDALVKLQVLSLGNNRID 144
>gi|194272222 leucine rich repeat containing 48 isoform a [Homo
sapiens]
Length = 523
Score = 42.0 bits (97), Expect = 2e-04
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 12/89 (13%)
Query: 52 QSLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHG 111
+ L L+NN++ + LE+ +L W+DLSFN++ +I+ L T NL L L
Sbjct: 68 RKLQLDNNIIEKIEG--------LENLAHLVWLDLSFNNIETIEG-LDTLVNLEDLSLFN 118
Query: 112 NSIQRLGEVNKLAVLPRLRSLTLHGNPME 140
N R+ +++ L L +L+ L+L N ++
Sbjct: 119 N---RISKIDSLDALVKLQVLSLGNNRID 144
>gi|109150416 peroxidasin [Homo sapiens]
Length = 1479
Score = 40.0 bits (92), Expect = 8e-04
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 53 SLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSID-PVLTTFFNLSVLYLHG 111
+L LNNN + ++ S E ENL ++ L N++ SID +L LYLH
Sbjct: 90 TLLLNNNQIK------RIPSGAFEDLENLKYLYLYKNEIQSIDRQAFKGLASLEQLYLHF 143
Query: 112 NSIQRLGEVNKLAVLPRLRSLTLHGNPMEEEKGYRVPGS 150
N I+ L + + LP+L L LH N + + VPG+
Sbjct: 144 NQIETL-DPDSFQHLPKLERLFLHNNRIT----HLVPGT 177
>gi|4826651 hypothetical protein LOC755 [Homo sapiens]
Length = 256
Score = 38.9 bits (89), Expect = 0.002
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 61 LNDLRDFNQVASQLLE-----HPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQ 115
L+ +R N S+L + +L I LS N +++++PV + LS LYL N I
Sbjct: 17 LHSVRKLNCWGSRLTDISICQEMPSLEVITLSVNSISTLEPV-SRCQRLSELYLRRNRIP 75
Query: 116 RLGEVNKLAVLPRLRSLTLHGNP 138
L E+ L LPRLR L L NP
Sbjct: 76 SLAELFYLKGLPRLRVLWLAENP 98
>gi|157785649 leucine-rich repeats and IQ motif containing 3 [Homo
sapiens]
Length = 624
Score = 38.9 bits (89), Expect = 0.002
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 57 NNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFN----LSVLYLHGN 112
+NN + D+ L+ L +DL N + S+ T F+N L +LYLH N
Sbjct: 58 SNNFITDIHP--------LQSCIKLIKLDLHGNQIKSLPN--TKFWNGLKNLKLLYLHDN 107
Query: 113 SIQRLGEVNKLAVLPRLRSLTLHGNPMEEEKGYR 146
+L + L+ P L +LT+ P+ +KGYR
Sbjct: 108 GFAKLKNICVLSACPTLIALTMFDCPVSLKKGYR 141
>gi|164607156 axonemal dynein light chain 1 [Homo sapiens]
Length = 190
Score = 38.1 bits (87), Expect = 0.003
Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 8/131 (6%)
Query: 12 QEPPLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNVLNDLRDFNQVA 71
Q PP++ S+ ++ + T + +G + L L N + +L V
Sbjct: 33 QIPPIEKMDASLSMLANCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVG 92
Query: 72 SQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRS 131
L E WI +F + ++ L +LY+ N ++ E KLA LP L
Sbjct: 93 DTLEE-----LWISYNFIEKLKGIHIMK---KLKILYMSNNLVKDWAEFVKLAELPCLED 144
Query: 132 LTLHGNPMEEE 142
L GNP+EE+
Sbjct: 145 LVFVGNPLEEK 155
>gi|239752702 PREDICTED: leucine rich repeat containing 38, partial
[Homo sapiens]
Length = 254
Score = 36.6 bits (83), Expect = 0.009
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 66 DFNQVASQLLEHPENLAWIDLSFNDLTSI-DPVLTTFFNLSVLYLHGNSIQRLGEVNKLA 124
+ Q+ + L + L+ N+L + + T +L VL L+ N+++ L V LA
Sbjct: 75 NLTQLGAGAFRSAGRLVKLSLANNNLVGVHEDAFETLESLQVLELNDNNLRSLS-VAALA 133
Query: 125 VLPRLRSLTLHGNP 138
LP LRSL L GNP
Sbjct: 134 ALPALRSLRLDGNP 147
>gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 36.6 bits (83), Expect = 0.009
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 66 DFNQVASQLLEHPENLAWIDLSFNDLTSI-DPVLTTFFNLSVLYLHGNSIQRLGEVNKLA 124
+ Q+ + L + L+ N+L + + T +L VL L+ N+++ L V LA
Sbjct: 229 NLTQLGAGAFRSAGRLVKLSLANNNLVGVHEDAFETLESLQVLELNDNNLRSLS-VAALA 287
Query: 125 VLPRLRSLTLHGNP 138
LP LRSL L GNP
Sbjct: 288 ALPALRSLRLDGNP 301
>gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 36.6 bits (83), Expect = 0.009
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 66 DFNQVASQLLEHPENLAWIDLSFNDLTSI-DPVLTTFFNLSVLYLHGNSIQRLGEVNKLA 124
+ Q+ + L + L+ N+L + + T +L VL L+ N+++ L V LA
Sbjct: 229 NLTQLGAGAFRSAGRLVKLSLANNNLVGVHEDAFETLESLQVLELNDNNLRSLS-VAALA 287
Query: 125 VLPRLRSLTLHGNP 138
LP LRSL L GNP
Sbjct: 288 ALPALRSLRLDGNP 301
>gi|46397373 leucine rich repeat containing 20 isoform 2 [Homo
sapiens]
Length = 134
Score = 36.6 bits (83), Expect = 0.009
Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 39 RPLKRSKSGKSLTQSLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVL 98
R + + S T L L N L+ L ++V++ L+H L IDLS N L
Sbjct: 14 RKVNETVESGSDTLELHLEGNFLHRLP--SEVSA--LQH---LKAIDLSRNQFQDFPEQL 66
Query: 99 TTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLTLHGNPMEEE 142
T L + L N I + V KLA +P LRS+ L NP+ E
Sbjct: 67 TALPALETINLEENEIVDV-PVEKLAAMPALRSINLRFNPLNAE 109
>gi|46397369 leucine rich repeat containing 20 isoform 1 [Homo
sapiens]
Length = 184
Score = 36.2 bits (82), Expect = 0.012
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 79 ENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLTLHGNP 138
++L IDLS N LT L + L N I + V KLA +P LRS+ L NP
Sbjct: 97 QHLKAIDLSRNQFQDFPEQLTALPALETINLEENEIVDV-PVEKLAAMPALRSINLRFNP 155
Query: 139 MEEE 142
+ E
Sbjct: 156 LNAE 159
Score = 30.0 bits (66), Expect = 0.86
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 84 IDLSFNDLTSI-DPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLTLHGNPMEE 141
I L+ N+L S+ +TTF L L+L GN + RL ++++ L L+++ L N ++
Sbjct: 55 ITLANNELKSLTSKFMTTFSQLRELHLEGNFLHRL--PSEVSALQHLKAIDLSRNQFQD 111
>gi|239735605 leucine rich repeat containing 36 isoform 1 [Homo
sapiens]
Length = 754
Score = 35.8 bits (81), Expect = 0.016
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 79 ENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLTLHGNP 138
+NL +DLS N +TS+ + +L L L+ N+I L EV++L LP L+ L L NP
Sbjct: 50 KNLRSLDLSRNLITSLKGI-QYLCSLQDLNLYYNNIPSLVEVSRLQPLPFLKELDLRLNP 108
Query: 139 -MEEEKGYRV 147
+ ++ YR+
Sbjct: 109 VVRKDTDYRL 118
>gi|239752518 PREDICTED: similar to leucine rich repeat containing
50, partial [Homo sapiens]
Length = 489
Score = 35.8 bits (81), Expect = 0.016
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 57 NNNVLNDLRDFNQVASQLLEHPENLAWID------LSFNDLTSIDPVLTTFFNLSVLYLH 110
N N L +LR N +A L H +NL +D L N +T + V L L+L
Sbjct: 20 NINHLCELRVLN-LARNFLSHVDNLNGLDSLTELNLRHNQITFVRDV-DNLPCLQHLFLS 77
Query: 111 GNSIQRLGEVNKLAVLPRLRSLTLHGNPMEEEKGYR 146
N+I V+ LA L +T GNP+ +E Y+
Sbjct: 78 FNNISSFDSVSCLADSSSLSDITFDGNPIAQESWYK 113
>gi|37221175 PH domain and leucine rich repeat protein phosphatase
[Homo sapiens]
Length = 1205
Score = 35.8 bits (81), Expect = 0.016
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 21/122 (17%)
Query: 38 LRPLKRSKSGKSLTQSLWLNNNVLND-----------LRDFNQVASQLLEHP-------E 79
L P S+ S+ Q L+L NN L D L+ + ++L P E
Sbjct: 489 LPPATLSEETNSILQELYLTNNSLTDKCVPLLTGHPHLKILHMAYNRLQSFPASKMAKLE 548
Query: 80 NLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLTLHGNPM 139
L IDLS N L +I + + + H N I+ EV + LP ++ + L N +
Sbjct: 549 ELEEIDLSGNKLKAIPTTIMNCRRMHTVIAHSNCIEVFPEVMQ---LPEIKCVDLSCNEL 605
Query: 140 EE 141
E
Sbjct: 606 SE 607
Score = 34.7 bits (78), Expect = 0.035
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 48 KSLTQSLWLNNNVLNDLRDFNQVAS--QLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLS 105
+S+ ++ + +N+ L D N + S LE+ + L+++ LSFN+ T I VL +
Sbjct: 215 RSVPAAVGVMHNLQTFLLDGNFLQSLPAELENMKQLSYLGLSFNEFTDIPEVLEKLTAVD 274
Query: 106 VLYLHGNSIQRLGEVNKLAVLPRLRSLTLHGN 137
L + GN ++ L + L +P ++ + L N
Sbjct: 275 KLCMSGNCVETL-RLQALRKMPHIKHVDLRLN 305
>gi|55743114 leucine rich repeat containing 49 [Homo sapiens]
Length = 686
Score = 35.8 bits (81), Expect = 0.016
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 57 NNNVLNDLRDFNQVASQLLEHPENLAWID------LSFNDLTSIDPVLTTFFNLSVLYLH 110
N N L +LR N +A L H +NL +D L N +T + V L L+L
Sbjct: 195 NINHLCELRVLN-LARNFLSHVDNLNGLDSLTELNLRHNQITFVRDV-DNLPCLQHLFLS 252
Query: 111 GNSIQRLGEVNKLAVLPRLRSLTLHGNPMEEEKGYR 146
N+I V+ LA L +T GNP+ +E Y+
Sbjct: 253 FNNISSFDSVSCLADSSSLSDITFDGNPIAQESWYK 288
>gi|15529980 leucine rich repeat containing 46 [Homo sapiens]
Length = 321
Score = 35.8 bits (81), Expect = 0.016
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 45 KSGKSLTQSLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNL 104
+ G +T++L N+ + +++ ++ + L + L +T+I L NL
Sbjct: 12 EGGVCITEALITKRNLT--FPEDGELSEKMFHTLDELQTVRLDREGITTIRN-LEGLQNL 68
Query: 105 SVLYLHGNSIQRLGEVNKLAVLPRLRSLTLHGNPMEE 141
LYL GN IQ ++ LA +P LR L+L GN + +
Sbjct: 69 HSLYLQGNKIQ---QIENLACIPSLRFLSLAGNQIRQ 102
>gi|148664188 leucine rich repeat containing 43 isoform 2 [Homo
sapiens]
Length = 471
Score = 35.0 bits (79), Expect = 0.027
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 57 NNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLT---TFFNLSVLYLHGNS 113
+N +L L A+ H NL +DL FNDLT + ++T T +L +L L G
Sbjct: 19 HNKLLGPLESLYVTAN----HWPNLVSLDLGFNDLTDLQSMVTSLRTLRHLRLLVLQG-- 72
Query: 114 IQRLGEVNKLAVLPRLRSLTL 134
N LA++P R LT+
Sbjct: 73 -------NPLALVPYYRGLTI 86
>gi|148664213 leucine rich repeat containing 43 isoform 1 [Homo
sapiens]
Length = 656
Score = 35.0 bits (79), Expect = 0.027
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 57 NNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLT---TFFNLSVLYLHGNS 113
+N +L L A+ H NL +DL FNDLT + ++T T +L +L L G
Sbjct: 204 HNKLLGPLESLYVTAN----HWPNLVSLDLGFNDLTDLQSMVTSLRTLRHLRLLVLQG-- 257
Query: 114 IQRLGEVNKLAVLPRLRSLTL 134
N LA++P R LT+
Sbjct: 258 -------NPLALVPYYRGLTI 271
>gi|63003903 leucine rich repeat containing 10 [Homo sapiens]
Length = 277
Score = 34.7 bits (78), Expect = 0.035
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 54 LWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNS 113
L+L++N LN L L +NL + L FN+ ++ V+ T L +LYL N
Sbjct: 57 LYLSDNHLNSL-------PPELGQLQNLQILALDFNNFKALPQVVCTLKQLCILYLGNNK 109
Query: 114 IQRLGEVNKLAVLPRLRSLTLHGN 137
+ L ++L++L LR+L + N
Sbjct: 110 LCDL--PSELSLLQNLRTLWIEAN 131
>gi|218931217 leucine rich repeat containing 61 [Homo sapiens]
Length = 259
Score = 34.7 bits (78), Expect = 0.035
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 48 KSLTQSLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVL 107
KS T L + +L LR L L W+DLS N LT + P L + L+VL
Sbjct: 22 KSRTGEFSLESILLLKLRGLGLADLGCLGECLGLEWLDLSGNALTHLGP-LASLRQLAVL 80
Query: 108 YLHGNSIQRLGEVNKLAVLPRLRSLTLHGN 137
+ N RL + LA L+SL GN
Sbjct: 81 NVSNN---RLTGLEPLATCENLQSLNAAGN 107
>gi|13027616 leucine rich repeat containing 61 [Homo sapiens]
Length = 259
Score = 34.7 bits (78), Expect = 0.035
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 48 KSLTQSLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVL 107
KS T L + +L LR L L W+DLS N LT + P L + L+VL
Sbjct: 22 KSRTGEFSLESILLLKLRGLGLADLGCLGECLGLEWLDLSGNALTHLGP-LASLRQLAVL 80
Query: 108 YLHGNSIQRLGEVNKLAVLPRLRSLTLHGN 137
+ N RL + LA L+SL GN
Sbjct: 81 NVSNN---RLTGLEPLATCENLQSLNAAGN 107
>gi|21361633 leucine rich repeat containing 40 [Homo sapiens]
Length = 602
Score = 34.7 bits (78), Expect = 0.035
Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 68 NQVAS---QLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGN 112
NQV S Q ++ ENL +DL NDL I P L NL L L GN
Sbjct: 528 NQVGSVDPQKMKMMENLTTLDLQNNDLLQIPPELGNCVNLRTLLLDGN 575
Score = 31.6 bits (70), Expect = 0.29
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 69 QVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPR 128
++ +++E E ++ +DLSFN L+ I L L+ L L N + L E ++ L R
Sbjct: 439 EIPKRMVELKEMVSDVDLSFNKLSFISLELCVLQKLTFLDLRNNFLNSLPE--EMESLVR 496
Query: 129 LRSLTLHGN--PMEEEKGYRV 147
L+++ L N M E YR+
Sbjct: 497 LQTINLSFNRFKMLPEVLYRI 517
Score = 28.9 bits (63), Expect = 1.9
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 63 DLRDFNQVAS--QLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEV 120
D+ D NQ+ S + ENL +++S N L + +T NL LYL N + + E
Sbjct: 111 DIHD-NQLTSLPSAIRELENLQKLNVSHNKLKILPEEITNLRNLKCLYLQHNELTCISE- 168
Query: 121 NKLAVLPRLRSLTLHGN 137
L L L L N
Sbjct: 169 -GFEQLSNLEDLDLSNN 184
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,198,149
Number of Sequences: 37866
Number of extensions: 239733
Number of successful extensions: 1388
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 1246
Number of HSP's gapped (non-prelim): 226
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.