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Search of human proteins with 223468693
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223468693 hypothetical protein LOC100130361 [Homo sapiens]
(514 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223468693 hypothetical protein LOC100130361 [Homo sapiens] 1065 0.0
gi|223468690 hypothetical protein LOC100132994 [Homo sapiens] 1065 0.0
gi|239752343 PREDICTED: hypothetical protein [Homo sapiens] 728 0.0
gi|239746856 PREDICTED: hypothetical protein XP_002343859 [Homo ... 728 0.0
gi|239757832 PREDICTED: hypothetical protein [Homo sapiens] 681 0.0
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 59 1e-08
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 59 1e-08
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 58 2e-08
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 55 2e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 54 3e-07
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 54 3e-07
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 51 2e-06
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 51 3e-06
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 51 3e-06
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 50 5e-06
gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo sap... 50 5e-06
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 50 5e-06
gi|20070376 solute carrier family 38, member 10 isoform b [Homo ... 50 6e-06
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 50 6e-06
gi|150170670 piccolo isoform 2 [Homo sapiens] 49 8e-06
gi|150378539 piccolo isoform 1 [Homo sapiens] 49 8e-06
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 48 2e-05
gi|239742467 PREDICTED: double homeobox, 4-like [Homo sapiens] 48 2e-05
gi|116089331 human immunodeficiency virus type I enhancer bindin... 47 3e-05
gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo sapi... 47 4e-05
gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo sapi... 47 4e-05
gi|239744244 PREDICTED: similar to double homeobox, 4 [Homo sapi... 47 4e-05
gi|239744242 PREDICTED: similar to double homeobox, 4 [Homo sapi... 47 4e-05
gi|239744240 PREDICTED: similar to double homeobox, 4 [Homo sapi... 47 4e-05
gi|54860105 nadrin isoform 2 [Homo sapiens] 47 4e-05
>gi|223468693 hypothetical protein LOC100130361 [Homo sapiens]
Length = 514
Score = 1065 bits (2754), Expect = 0.0
Identities = 514/514 (100%), Positives = 514/514 (100%)
Query: 1 MSSPDKVSVCGAGFDLEGGKKAGSRTASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPEG 60
MSSPDKVSVCGAGFDLEGGKKAGSRTASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPEG
Sbjct: 1 MSSPDKVSVCGAGFDLEGGKKAGSRTASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPEG 60
Query: 61 FSFESESELIEQGRVVLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFP 120
FSFESESELIEQGRVVLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFP
Sbjct: 61 FSFESESELIEQGRVVLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFP 120
Query: 121 EGAAAEGSAENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNPERGSKS 180
EGAAAEGSAENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNPERGSKS
Sbjct: 121 EGAAAEGSAENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNPERGSKS 180
Query: 181 RWSLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTS 240
RWSLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTS
Sbjct: 181 RWSLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTS 240
Query: 241 RQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSC 300
RQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSC
Sbjct: 241 RQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSC 300
Query: 301 SGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGV 360
SGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGV
Sbjct: 301 SGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGV 360
Query: 361 RPQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLS 420
RPQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLS
Sbjct: 361 RPQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLS 420
Query: 421 VRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQQPPG 480
VRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQQPPG
Sbjct: 421 VRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQQPPG 480
Query: 481 AQGCPRCIWLQREIEDLTQQLAAMQFLTDKFQDL 514
AQGCPRCIWLQREIEDLTQQLAAMQFLTDKFQDL
Sbjct: 481 AQGCPRCIWLQREIEDLTQQLAAMQFLTDKFQDL 514
>gi|223468690 hypothetical protein LOC100132994 [Homo sapiens]
Length = 514
Score = 1065 bits (2754), Expect = 0.0
Identities = 514/514 (100%), Positives = 514/514 (100%)
Query: 1 MSSPDKVSVCGAGFDLEGGKKAGSRTASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPEG 60
MSSPDKVSVCGAGFDLEGGKKAGSRTASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPEG
Sbjct: 1 MSSPDKVSVCGAGFDLEGGKKAGSRTASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPEG 60
Query: 61 FSFESESELIEQGRVVLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFP 120
FSFESESELIEQGRVVLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFP
Sbjct: 61 FSFESESELIEQGRVVLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFP 120
Query: 121 EGAAAEGSAENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNPERGSKS 180
EGAAAEGSAENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNPERGSKS
Sbjct: 121 EGAAAEGSAENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNPERGSKS 180
Query: 181 RWSLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTS 240
RWSLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTS
Sbjct: 181 RWSLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTS 240
Query: 241 RQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSC 300
RQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSC
Sbjct: 241 RQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSC 300
Query: 301 SGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGV 360
SGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGV
Sbjct: 301 SGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGV 360
Query: 361 RPQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLS 420
RPQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLS
Sbjct: 361 RPQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLS 420
Query: 421 VRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQQPPG 480
VRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQQPPG
Sbjct: 421 VRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQQPPG 480
Query: 481 AQGCPRCIWLQREIEDLTQQLAAMQFLTDKFQDL 514
AQGCPRCIWLQREIEDLTQQLAAMQFLTDKFQDL
Sbjct: 481 AQGCPRCIWLQREIEDLTQQLAAMQFLTDKFQDL 514
>gi|239752343 PREDICTED: hypothetical protein [Homo sapiens]
Length = 518
Score = 728 bits (1878), Expect = 0.0
Identities = 373/518 (72%), Positives = 407/518 (78%), Gaps = 4/518 (0%)
Query: 1 MSSPDKVSVCGAGFDLEGGKKAGSRTASPGAPGAHSHGLDLGV----PGSGDGKSESGFT 56
MSS D+VSVC AG EGG++AG+ TASPGAP HG DL G G GK ESGFT
Sbjct: 1 MSSTDEVSVCRAGLGPEGGEQAGAHTASPGAPRGDGHGRDLNFGGQRSGKGKGKGESGFT 60
Query: 57 DPEGFSFESESELIEQGRVVLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQG 116
DPE FSFESESELIEQGRVVLWG+EGRPGTPVDDQ DYSFYLADEPA I+PP SVQG
Sbjct: 61 DPESFSFESESELIEQGRVVLWGQEGRPGTPVDDQAGGGDYSFYLADEPATIMPPSSVQG 120
Query: 117 HPFPEGAAAEGSAENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNPER 176
HP PEGA A+GS + WAD EVGPS R L SPG+WQQASAG LHL PGP AW+NPER
Sbjct: 121 HPSPEGATAKGSTDIWADLEVGPSWRGALSPSPGEWQQASAGPLHLSVPGPGPAWENPER 180
Query: 177 GSKSRWSLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKR 236
GSKSR S +VDPQQPSA+GP L T DSDSADESSDLP+++V I EGSQAKPGSPKK
Sbjct: 181 GSKSRLSFQVDPQQPSAEGPAGLNTDDSDSADESSDLPVIRVIISTKEGSQAKPGSPKKP 240
Query: 237 ADTSRQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEV 296
DT + SFH +ESYL V G L S PR LTPV ERPAVGEL+ KKMQS WGK V
Sbjct: 241 GDTCGRRSFHRRESYLQVQGPLLISPPRRLTPVVERPAVGELDVPSLKKMQSMVWGKRGV 300
Query: 297 RPSCSGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPP 356
RPSCSGAA G LP+G RK+A KKSL GA +LAL FPA G+RLSA PP+PA+FPP
Sbjct: 301 RPSCSGAAVRGPLPRGTLGRKVAQEKKSLEGAPELALRGAFPAWGQRLSAVPPDPASFPP 360
Query: 357 FSGVRPQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGL 416
SGV G S +P++PKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPT +P L
Sbjct: 361 VSGVGLLGKSVRPKEPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTQKPEL 420
Query: 417 PRLSVRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQ 476
LSVRRGE+SS DPNIRAPQ+ GTS+PSA++ LVPR HA SG+ QPPVHPPRPERQQ
Sbjct: 421 ISLSVRRGEYSSGDPNIRAPQVLGTSQPSAFTLRRLVPRCHASSGDWQPPVHPPRPERQQ 480
Query: 477 QPPGAQGCPRCIWLQREIEDLTQQLAAMQFLTDKFQDL 514
QPPGAQGCPRCI LQREIEDL QLAAMQFLTDKFQDL
Sbjct: 481 QPPGAQGCPRCILLQREIEDLRDQLAAMQFLTDKFQDL 518
>gi|239746856 PREDICTED: hypothetical protein XP_002343859 [Homo
sapiens]
Length = 518
Score = 728 bits (1878), Expect = 0.0
Identities = 373/518 (72%), Positives = 407/518 (78%), Gaps = 4/518 (0%)
Query: 1 MSSPDKVSVCGAGFDLEGGKKAGSRTASPGAPGAHSHGLDLGV----PGSGDGKSESGFT 56
MSS D+VSVC AG EGG++AG+ TASPGAP HG DL G G GK ESGFT
Sbjct: 1 MSSTDEVSVCRAGLGPEGGEQAGAHTASPGAPRGDGHGRDLNFGGQRSGKGKGKGESGFT 60
Query: 57 DPEGFSFESESELIEQGRVVLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQG 116
DPE FSFESESELIEQGRVVLWG+EGRPGTPVDDQ DYSFYLADEPA I+PP SVQG
Sbjct: 61 DPESFSFESESELIEQGRVVLWGQEGRPGTPVDDQAGGGDYSFYLADEPATIMPPSSVQG 120
Query: 117 HPFPEGAAAEGSAENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNPER 176
HP PEGA A+GS + WAD EVGPS R L SPG+WQQASAG LHL PGP AW+NPER
Sbjct: 121 HPSPEGATAKGSTDIWADLEVGPSWRGALSPSPGEWQQASAGPLHLSVPGPGPAWENPER 180
Query: 177 GSKSRWSLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKR 236
GSKSR S +VDPQQPSA+GP L T DSDSADESSDLP+++V I EGSQAKPGSPKK
Sbjct: 181 GSKSRLSFQVDPQQPSAEGPAGLNTDDSDSADESSDLPVIRVIISTKEGSQAKPGSPKKP 240
Query: 237 ADTSRQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEV 296
DT + SFH +ESYL V G L S PR LTPV ERPAVGEL+ KKMQS WGK V
Sbjct: 241 GDTCGRRSFHRRESYLQVQGPLLISPPRRLTPVVERPAVGELDVPSLKKMQSMVWGKRGV 300
Query: 297 RPSCSGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPP 356
RPSCSGAA G LP+G RK+A KKSL GA +LAL FPA G+RLSA PP+PA+FPP
Sbjct: 301 RPSCSGAAVRGPLPRGTLGRKVAQEKKSLEGAPELALRGAFPAWGQRLSAVPPDPASFPP 360
Query: 357 FSGVRPQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGL 416
SGV G S +P++PKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPT +P L
Sbjct: 361 VSGVGLLGKSVRPKEPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTQKPEL 420
Query: 417 PRLSVRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQ 476
LSVRRGE+SS DPNIRAPQ+ GTS+PSA++ LVPR HA SG+ QPPVHPPRPERQQ
Sbjct: 421 ISLSVRRGEYSSGDPNIRAPQVLGTSQPSAFTLRRLVPRCHASSGDWQPPVHPPRPERQQ 480
Query: 477 QPPGAQGCPRCIWLQREIEDLTQQLAAMQFLTDKFQDL 514
QPPGAQGCPRCI LQREIEDL QLAAMQFLTDKFQDL
Sbjct: 481 QPPGAQGCPRCILLQREIEDLRDQLAAMQFLTDKFQDL 518
>gi|239757832 PREDICTED: hypothetical protein [Homo sapiens]
Length = 503
Score = 681 bits (1756), Expect = 0.0
Identities = 348/490 (71%), Positives = 382/490 (77%), Gaps = 4/490 (0%)
Query: 1 MSSPDKVSVCGAGFDLEGGKKAGSRTASPGAPGAHSHGLDLGV----PGSGDGKSESGFT 56
MSS D+VSVC AG EGG++AG+ TASPGAP HG DL G G GK ESGFT
Sbjct: 1 MSSTDEVSVCRAGLGPEGGEQAGAHTASPGAPRGDGHGRDLNFGGQRSGKGKGKGESGFT 60
Query: 57 DPEGFSFESESELIEQGRVVLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQG 116
DPE FSFESESELIEQGRVVLWG+EGRPGTPVDDQ DYSFYLADEPA I+PP SVQG
Sbjct: 61 DPESFSFESESELIEQGRVVLWGQEGRPGTPVDDQAGGGDYSFYLADEPATIMPPSSVQG 120
Query: 117 HPFPEGAAAEGSAENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNPER 176
HP PEGA A+GS + WAD EVGPS R L SPG+WQQASAG LHL PGP AW+NPER
Sbjct: 121 HPSPEGATAKGSTDIWADLEVGPSWRGALSPSPGEWQQASAGPLHLSVPGPGPAWENPER 180
Query: 177 GSKSRWSLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKR 236
GSKSR S +VDPQQPSA+GP L T DSDSADESSDLP+++V I EGSQAKPGSPKK
Sbjct: 181 GSKSRLSFQVDPQQPSAEGPAGLNTDDSDSADESSDLPVIRVIISTKEGSQAKPGSPKKP 240
Query: 237 ADTSRQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEV 296
DT + SFH +ESYL V G L S PR LTPV ERPAVGEL+ KKMQS WGK V
Sbjct: 241 GDTCGRRSFHRRESYLQVQGPLLISPPRRLTPVVERPAVGELDVPSLKKMQSMVWGKRGV 300
Query: 297 RPSCSGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPP 356
RPSCSGAA G LP+G RK+A KKSL GA +LAL FPA G+RLSA PP+PA+FPP
Sbjct: 301 RPSCSGAAVRGPLPRGTLGRKVAQEKKSLEGAPELALRGAFPAWGQRLSAVPPDPASFPP 360
Query: 357 FSGVRPQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGL 416
SGV G S +P++PKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPT +P L
Sbjct: 361 VSGVGLLGKSVRPKEPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTQKPEL 420
Query: 417 PRLSVRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQ 476
LSVRRGE+SS DPNIRAPQ+ GTS+PSA++ LVPR HA SG+ QPPVHPPRPERQQ
Sbjct: 421 ISLSVRRGEYSSGDPNIRAPQVLGTSQPSAFTLRRLVPRCHASSGDWQPPVHPPRPERQQ 480
Query: 477 QPPGAQGCPR 486
QPPGAQGCPR
Sbjct: 481 QPPGAQGCPR 490
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 58.5 bits (140), Expect = 1e-08
Identities = 127/503 (25%), Positives = 157/503 (31%), Gaps = 69/503 (13%)
Query: 29 PGAPGAHSHGLDLGVPGSG-----DGKSES----GFTDPEGFSFE--SESELIEQGRVVL 77
PG PG D GVPG +GK G P G + S+ E G V
Sbjct: 569 PGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQ 628
Query: 78 WGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEGAAAE--GSAENWADA 135
G +G PG P G + AD A PP +QG P EG S
Sbjct: 629 KGDQGHPGVP-GFMGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPG 687
Query: 136 EVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNP----ERGSKSRWSLRVDPQQP 191
E G GRD PG+ +A L PGP A P G R +
Sbjct: 688 EEGKEGRDGKPGPPGEPGKAGEPGL----PGPEGARGPPGFKGHTGDSGAPGPRGESGAM 743
Query: 192 SAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTSRQASFHCKESY 251
G LP D D+ P G GS PG P + T Q +
Sbjct: 744 GLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGP-SGTPGQKGSKGENGS 802
Query: 252 LPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGAAAAGALPQ 311
+PG FL PRG V E P K + G+ P G P
Sbjct: 803 PGLPG-FL--GPRGPPGEPGEKGVPGKEGVPGKPGEPGFKGE-RGDPGIKGDKG----PP 854
Query: 312 GLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGVRPQGMSKKP-Q 370
G + G G + L +G P GE PP P P F G+R + S + +
Sbjct: 855 GGKGQPGDPGIPGHKGHTGLMGPQGLP--GENGPVGPPGPPGQPGFPGLRGESPSMETLR 912
Query: 371 KPKHSSPGKKPAGRKT-----------RESQAAAREDNDPNRDEVPRAQLPTHRPGLPRL 419
+ GK+ R + SQ P +D +P P PG P
Sbjct: 913 RLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLPGRAGPMGEPGRPGQ 972
Query: 420 SVRRGEFSSSDP-------------------NIRAPQLPGTSEPSAYSPGGLVPRRHAPS 460
G P + P +PG Y+ GL P P
Sbjct: 973 GGLEGPSGPIGPKGERGAKGDPGAPGVGLRGEMGPPGIPGQPGEPGYAKDGL-PGIPGPQ 1031
Query: 461 GNQQPPVHPPRPERQQQPPGAQG 483
G P HP P PPG G
Sbjct: 1032 GETGPAGHPGLP----GPPGPPG 1050
Score = 39.3 bits (90), Expect = 0.009
Identities = 49/184 (26%), Positives = 65/184 (35%), Gaps = 28/184 (15%)
Query: 13 GFDLEGGKKAGSRTASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELIEQ 72
G E GK+ R PG PG + G+PG + GF G S + E
Sbjct: 684 GIPGEEGKEG--RDGKPGPPGEPGKAGEPGLPGPEGARGPPGFKGHTGDS-GAPGPRGES 740
Query: 73 GRVVLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEGAAAEGSAENW 132
G + L G+EG PG D P QG P G + +
Sbjct: 741 GAMGLPGQEGLPGKDGD-------------------TGPTGPQGPQGPRGPPGKNGSPG- 780
Query: 133 ADAEVGPSGRDVLGHSPGKWQQASAGRLHLCGP-GPVRAWKNPERGSKSRWSLRVDPQQP 191
+ E GPSG G K + S G GP GP + E+G + + P +P
Sbjct: 781 SPGEPGPSGTP--GQKGSKGENGSPGLPGFLGPRGP--PGEPGEKGVPGKEGVPGKPGEP 836
Query: 192 SAKG 195
KG
Sbjct: 837 GFKG 840
Score = 36.2 bits (82), Expect = 0.073
Identities = 117/522 (22%), Positives = 157/522 (30%), Gaps = 132/522 (25%)
Query: 29 PGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFS--FESESELIEQGRVVLWGREGRPGT 86
PG PG + G+ G K E+G GF + + E+G + L G +G G
Sbjct: 261 PGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGLKGDRGE 320
Query: 87 -----PVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEGAAAEGSAE-----NWADAE 136
P G L + P P + G P+G + E
Sbjct: 321 KGEAGPAGPPG--------LPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGE 372
Query: 137 VGPSGRDVLGHSPGKWQQASAGRL----------HLCGPGPV-------------RAWKN 173
+GP G G K Q+ + G H+ PGP K+
Sbjct: 373 LGPQG--PTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKD 430
Query: 174 PERGSKSR---------WSLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNE 224
ERG K R DP P GP S LP +G +
Sbjct: 431 GERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLP-GPLGTKGDR 489
Query: 225 GSQAKPGSPKKRADTSRQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQK 284
G+ PGSP R D PG + P P ++ + G
Sbjct: 490 GAPGIPGSPGSRGD----------------PGIGVAGPPGPSGPPGDKGSPG-------- 525
Query: 285 KMQSRAWGKVEVRPSCSGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERL 344
SR P G PQG + R S G + LA C +
Sbjct: 526 ---SRG------LPGFPG-------PQGPAGRDGLSSLLSPGDINLLAK----DVCND-- 563
Query: 345 SAAPPEPATFPPFSGVRPQGMSKKPQKP-KHSSPGKK----------------PAGRK-T 386
PP P P G + G P KP + + GKK P G +
Sbjct: 564 --CPPGPPGLPGLPGFK--GDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGE 619
Query: 387 RESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVRRGEFSSSDPNIRAPQLPG-TSEPS 445
R + + D VP P PG P G ++ P I+ PG P
Sbjct: 620 RGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGIAG--AAGPPGIQGS--PGKEGPPG 675
Query: 446 AYSPGGL--VPRRHAPSGNQQPPVHPPRPERQQQP--PGAQG 483
P GL +P G P P P + +P PG +G
Sbjct: 676 PQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEG 717
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 58.5 bits (140), Expect = 1e-08
Identities = 127/503 (25%), Positives = 157/503 (31%), Gaps = 69/503 (13%)
Query: 29 PGAPGAHSHGLDLGVPGSG-----DGKSES----GFTDPEGFSFE--SESELIEQGRVVL 77
PG PG D GVPG +GK G P G + S+ E G V
Sbjct: 1122 PGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQ 1181
Query: 78 WGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEGAAAE--GSAENWADA 135
G +G PG P G + AD A PP +QG P EG S
Sbjct: 1182 KGDQGHPGVP-GFMGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPG 1240
Query: 136 EVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNP----ERGSKSRWSLRVDPQQP 191
E G GRD PG+ +A L PGP A P G R +
Sbjct: 1241 EEGKEGRDGKPGPPGEPGKAGEPGL----PGPEGARGPPGFKGHTGDSGAPGPRGESGAM 1296
Query: 192 SAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTSRQASFHCKESY 251
G LP D D+ P G GS PG P + T Q +
Sbjct: 1297 GLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGP-SGTPGQKGSKGENGS 1355
Query: 252 LPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGAAAAGALPQ 311
+PG FL PRG V E P K + G+ P G P
Sbjct: 1356 PGLPG-FL--GPRGPPGEPGEKGVPGKEGVPGKPGEPGFKGE-RGDPGIKGDKG----PP 1407
Query: 312 GLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGVRPQGMSKKP-Q 370
G + G G + L +G P GE PP P P F G+R + S + +
Sbjct: 1408 GGKGQPGDPGIPGHKGHTGLMGPQGLP--GENGPVGPPGPPGQPGFPGLRGESPSMETLR 1465
Query: 371 KPKHSSPGKKPAGRKT-----------RESQAAAREDNDPNRDEVPRAQLPTHRPGLPRL 419
+ GK+ R + SQ P +D +P P PG P
Sbjct: 1466 RLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLPGRAGPMGEPGRPGQ 1525
Query: 420 SVRRGEFSSSDP-------------------NIRAPQLPGTSEPSAYSPGGLVPRRHAPS 460
G P + P +PG Y+ GL P P
Sbjct: 1526 GGLEGPSGPIGPKGERGAKGDPGAPGVGLRGEMGPPGIPGQPGEPGYAKDGL-PGIPGPQ 1584
Query: 461 GNQQPPVHPPRPERQQQPPGAQG 483
G P HP P PPG G
Sbjct: 1585 GETGPAGHPGLP----GPPGPPG 1603
Score = 39.3 bits (90), Expect = 0.009
Identities = 49/184 (26%), Positives = 65/184 (35%), Gaps = 28/184 (15%)
Query: 13 GFDLEGGKKAGSRTASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELIEQ 72
G E GK+ R PG PG + G+PG + GF G S + E
Sbjct: 1237 GIPGEEGKEG--RDGKPGPPGEPGKAGEPGLPGPEGARGPPGFKGHTGDS-GAPGPRGES 1293
Query: 73 GRVVLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEGAAAEGSAENW 132
G + L G+EG PG D P QG P G + +
Sbjct: 1294 GAMGLPGQEGLPGKDGD-------------------TGPTGPQGPQGPRGPPGKNGSPG- 1333
Query: 133 ADAEVGPSGRDVLGHSPGKWQQASAGRLHLCGP-GPVRAWKNPERGSKSRWSLRVDPQQP 191
+ E GPSG G K + S G GP GP + E+G + + P +P
Sbjct: 1334 SPGEPGPSGTP--GQKGSKGENGSPGLPGFLGPRGP--PGEPGEKGVPGKEGVPGKPGEP 1389
Query: 192 SAKG 195
KG
Sbjct: 1390 GFKG 1393
Score = 37.4 bits (85), Expect = 0.033
Identities = 52/191 (27%), Positives = 67/191 (35%), Gaps = 37/191 (19%)
Query: 321 GKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGVR----PQGMSKKP-QKPKHS 375
G GG+ L GFP PP P P G P G +P ++ +
Sbjct: 723 GPPGPGGSPGLPGEIGFPG-----KPGPPGPTGPPGKDGPNGPPGPPGTKGEPGERGEDG 777
Query: 376 SPGKKPAGRKTRESQAAAREDNDPNRDEVPRA------------QLPTHRPGLPRLSVRR 423
PGK P R Q A + +P A Q GLP L R
Sbjct: 778 LPGK-PGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGLKGDR 836
Query: 424 GEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQQ------ 477
GE + P P LPGT+ S ++P +P P G + P P P Q +
Sbjct: 837 GEKGEAGP-AGPPGLPGTT--SLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGP 893
Query: 478 -----PPGAQG 483
PPGA+G
Sbjct: 894 QGPTGPPGAKG 904
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 57.8 bits (138), Expect = 2e-08
Identities = 58/200 (29%), Positives = 74/200 (37%), Gaps = 14/200 (7%)
Query: 292 GKVEVRPSCSGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPP-- 349
GK + P G G P G + G KS S +G P G PP
Sbjct: 55 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPP 114
Query: 350 --EPATFPPFSGVRPQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRA 407
+P PP G RPQG P KP+ G P G K+R ++ + P +
Sbjct: 115 PGKPQGPPPQGGNRPQG-PPPPGKPQ----GPPPQGDKSRSPRSPPGKPQGPPPQGGNQP 169
Query: 408 QLPTHRPGLPRLSVRRGEFSSSDP----NIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQ 463
Q P PG P+ +G P + P G S+ SP G P+ P G
Sbjct: 170 QGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGK-PQGPPPQGGN 228
Query: 464 QPPVHPPRPERQQQPPGAQG 483
QP PP P + Q PP G
Sbjct: 229 QPQGPPPPPGKPQGPPPQGG 248
Score = 53.9 bits (128), Expect = 3e-07
Identities = 67/243 (27%), Positives = 87/243 (35%), Gaps = 19/243 (7%)
Query: 253 PVPGRFLTSAPRGLTPVAERPAVGELEDSP-----QKKMQSRAWGKVEVRPSCSGAAAAG 307
P PG+ P+G + R G+ + P Q + GK + P G G
Sbjct: 72 PPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQG 131
Query: 308 ALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGVRPQGMSK 367
P G + G KS S +G P G PP P P G PQG K
Sbjct: 132 PPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKP--QGPPPQG-GK 188
Query: 368 KPQKPKHSSPGKK----PAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVRR 423
KPQ P PGK P G K+R SQ+ + P + Q P PG P+ +
Sbjct: 189 KPQGPP--PPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ 246
Query: 424 GEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQQPPGAQG 483
G + P + P PG + G +P G Q P Q PP A G
Sbjct: 247 G---GNKP--QGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGG 301
Query: 484 CPR 486
P+
Sbjct: 302 NPQ 304
Score = 48.5 bits (114), Expect = 1e-05
Identities = 45/153 (29%), Positives = 58/153 (37%), Gaps = 13/153 (8%)
Query: 338 PACGERLSAAPPEPATF---PPFSGVRPQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAR 394
P G + PP P PP G +PQG P KP+ G P G K+R ++
Sbjct: 41 PQGGNKPQGPPPPPGKPQGPPPQGGNKPQG-PPPPGKPQ----GPPPQGDKSRSPRSPPG 95
Query: 395 EDNDPNRDEVPRAQLPTHRPGLPRLSVRRGEFSSSDP----NIRAPQLPGTSEPSAYSPG 450
+ P + Q P PG P+ +G P + P G S SP
Sbjct: 96 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPP 155
Query: 451 GLVPRRHAPSGNQQPPVHPPRPERQQQPPGAQG 483
G P+ P G QP PP P + Q PP G
Sbjct: 156 GK-PQGPPPQGGNQPQGPPPPPGKPQGPPPQGG 187
Score = 45.8 bits (107), Expect = 9e-05
Identities = 68/297 (22%), Positives = 93/297 (31%), Gaps = 39/297 (13%)
Query: 188 PQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTSRQASFHC 247
PQ P G + P D + P G G+Q + P
Sbjct: 68 PQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 127
Query: 248 KESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSP-----QKKMQSRAWGKVEVRPSCSG 302
+ P PG+ P+G + R G+ + P Q + GK + P G
Sbjct: 128 RPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG 187
Query: 303 AAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGVRP 362
G P G + G KS S +G P G PP P P G P
Sbjct: 188 KKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKP--QGPPP 245
Query: 363 QGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVR 422
QG KPQ P P KP G + + + P + + P Q + G P
Sbjct: 246 QG-GNKPQGP---PPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPP----- 296
Query: 423 RGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQQPP 479
+ N + PQ P P+G Q P PP+ R +PP
Sbjct: 297 ----PPAGGNPQQPQAP-------------------PAGQPQGPPRPPQGGRPSRPP 330
Score = 30.0 bits (66), Expect = 5.3
Identities = 48/209 (22%), Positives = 63/209 (30%), Gaps = 12/209 (5%)
Query: 188 PQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTSRQASFHC 247
PQ P G + P D + P G G+Q + P
Sbjct: 129 PQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGK 188
Query: 248 KESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSP-----QKKMQSRAWGKVEVRPSCSG 302
K P PG+ P+G + + G+ + P Q + GK + P G
Sbjct: 189 KPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG 248
Query: 303 AAAAGALPQGLSRRKMA-GGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGVR 361
G P G + A GG KS S +G P PP PA G
Sbjct: 249 NKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPA------GGN 302
Query: 362 PQGMSKKPQKPKHSSPGKKPAGRKTRESQ 390
PQ P P GR +R Q
Sbjct: 303 PQQPQAPPAGQPQGPPRPPQGGRPSRPPQ 331
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 54.7 bits (130), Expect = 2e-07
Identities = 60/223 (26%), Positives = 76/223 (34%), Gaps = 28/223 (12%)
Query: 292 GKVEVRPSCSGAAAAGALPQGLSRR--KMAGGKKSLGGASQLALGRGFPACGERLSAAPP 349
GK E RP G + G P+ GG +S G + G P G S PP
Sbjct: 55 GKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPP 114
Query: 350 ----EPATFPPFSGVRPQGMSKKPQKPKHSSPGK------------KPAGRKTRESQAAA 393
+P PP G + QG +P KP+ P KP G + +
Sbjct: 115 PRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQ 174
Query: 394 REDNDPNRDEVP------RAQLPTHRPGLPRLSVRRGEFSSSDPNIRAPQLPGTSEPSAY 447
P + E P ++Q P RPG P +G S P R + G
Sbjct: 175 GPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGN 234
Query: 448 SPGGLVPRRHAPSG----NQQPPVHPPRPERQQQPPGAQGCPR 486
P G P P G P PP P R Q PP G P+
Sbjct: 235 KPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPPPPGGNPQ 277
Score = 53.5 bits (127), Expect = 4e-07
Identities = 62/232 (26%), Positives = 82/232 (35%), Gaps = 19/232 (8%)
Query: 263 PRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGAAAAGALPQGLSRR--KMAG 320
PR P P G P + GK E +P G + G P+ G
Sbjct: 73 PRPGKPEGPPPQGGNQSQGPPPRP-----GKPEGQPPQGGNQSQGPPPRPGKPEGPPPQG 127
Query: 321 GKKSLGGASQLALGRGFPACGERLSAAPP----EPATFPPFSGVRPQGMSKKPQKPKHSS 376
G +S G + G P G S PP +P PP G + QG P KP+
Sbjct: 128 GNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPP 187
Query: 377 PGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVRRG--EFSSSDPNIR 434
P G +++ + P ++Q P RPG P +G + P+
Sbjct: 188 P---QGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPG 244
Query: 435 APQLPGTSE---PSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQQPPGAQG 483
PQ P E P P G P GN Q P+ PP + Q PP QG
Sbjct: 245 KPQGPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPPPPPQG 296
Score = 48.5 bits (114), Expect = 1e-05
Identities = 61/230 (26%), Positives = 82/230 (35%), Gaps = 27/230 (11%)
Query: 263 PRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGAAAAGALPQGLSRR--KMAG 320
PR P + P G P + GK E P G + G P+ G
Sbjct: 94 PRPGKPEGQPPQGGNQSQGPPPRP-----GKPEGPPPQGGNQSQGPPPRPGKPEGPPPQG 148
Query: 321 GKKSLGGASQLALGRGFPACGERLSAAPP----EPATFPPFSGVRPQGMSKKPQKPKHSS 376
G +S G + G P G S PP +P PP G + QG +P KP+
Sbjct: 149 GNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPP 208
Query: 377 P--GKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVRRGEFSSSDPNIR 434
P G + G R + N+ + P P H PG P+ G +
Sbjct: 209 PQGGNQSQGPPPRPGKPEGPPSQGGNKPQGP----PPH-PGKPQ-----GPPPQEGNKPQ 258
Query: 435 APQLPGTSEPSAYSPGGLVPRRHAP--SGNQQPPVHPPRPERQQQPPGAQ 482
P PG P P G P++ P +G Q P PP+ R +PP Q
Sbjct: 259 RPPPPG--RPQGPPPPGGNPQQPLPPPAGKPQGPPPPPQGGRPHRPPQGQ 306
Score = 47.4 bits (111), Expect = 3e-05
Identities = 44/162 (27%), Positives = 59/162 (36%), Gaps = 23/162 (14%)
Query: 342 ERLSAAPPEPATFPPFSGVRPQGMSKKPQKPKHSSP--GKKPAGRKTRESQAAAREDNDP 399
+R P +P PP G + QG +P KP+ P G + G R + +
Sbjct: 48 QRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGG 107
Query: 400 NRDEVPRAQLPTHRPGLPRLSVRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAP 459
N ++Q P RPG P +G S P R + G G PR P
Sbjct: 108 N-----QSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKP 162
Query: 460 SG--------NQQPPVHPPRPE--------RQQQPPGAQGCP 485
G +Q PP HP +PE + Q PP G P
Sbjct: 163 EGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKP 204
Score = 32.0 bits (71), Expect = 1.4
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 428 SSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQQPPGAQG 483
S P R PQ G ++P P P P G Q PPRP + + PP G
Sbjct: 33 SGKPEGRRPQ--GGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGG 86
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 54.3 bits (129), Expect = 3e-07
Identities = 122/471 (25%), Positives = 146/471 (30%), Gaps = 55/471 (11%)
Query: 29 PGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELIEQGRVVLWGREGRPGTPV 88
PGA GA+ G PG + SG P G G G PG P
Sbjct: 394 PGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPK-------------GNSGEPGAP- 439
Query: 89 DDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEGAAAEGSAENWADAEVGPSGRDVLGHS 148
+GD EP P VQG P P G + A E GP+G L
Sbjct: 440 GSKGDTG-----AKGEPG----PVGVQGPPGPAGEEGKRGARG----EPGPTG---LPGP 483
Query: 149 PGKWQQASAGRLHLCGPGPVRAWKNP--ERGSKSRWSLRVDPQQPSAKGPTRLPTHDSDS 206
PG ++ G G V K P ERGS + P + G LP +
Sbjct: 484 PG--ERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLT 541
Query: 207 ADESSDLPLMKVGICRNEGSQAKPGSPKKRADTSRQA--SFHCKESYLPVPG----RFLT 260
S P K G G +PG P + F + PG R +
Sbjct: 542 GSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVP 601
Query: 261 SAPRGLTPVAERPAVG-ELEDSPQKKMQSRAWGKVEVRPSCSGAAAAGALPQGLSRRKMA 319
P + P + G + P R P G P +
Sbjct: 602 GPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQ 661
Query: 320 GGKKSLG--GASQLALGRGFPACGERLSAAPPEPATFPPFSGVRPQGMSKKPQKPKHSSP 377
G LG G S RGFP GER PP PA P + P K +P
Sbjct: 662 GVPGDLGAPGPSGARGERGFP--GERGVQGPPGPAG-PRGANGAPGNDGAKGDAGAPGAP 718
Query: 378 GKKPA-GRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVRRGEFSSSDPN--IR 434
G + A G + + A P D P G P RG P
Sbjct: 719 GSQGAPGLQGMPGERGAAGLPGPKGDRGDAG--PKGADGSPGKDGVRGLTGPIGPPGPAG 776
Query: 435 APQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQQPPGAQGCP 485
AP G S PS P G R AP +P PP P PPGA G P
Sbjct: 777 APGDKGESGPSG--PAGPTGARGAPGDRGEPG--PPGPAGFAGPPGADGQP 823
Score = 40.0 bits (92), Expect = 0.005
Identities = 127/528 (24%), Positives = 160/528 (30%), Gaps = 121/528 (22%)
Query: 30 GAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELIEQGRVVLWGREGRPGTPVD 89
G PG DLG PG + E GF G QG G G G P +
Sbjct: 656 GKPGEQGVPGDLGAPGPSGARGERGFPGERGV----------QGPPGPAGPRGANGAPGN 705
Query: 90 D--QGDVVDYSFYLADEPAA--IVPPPSVQGHPFPEGAAA-EGSAENWADAEVGPSGRDV 144
D +GD A P A P +QG P GAA G + DA GP G D
Sbjct: 706 DGAKGD--------AGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDA--GPKGAD- 754
Query: 145 LGHSPGK-WQQASAGRLHLCGPGPVRAWKNPE--------RGSKSRWSLRVDPQQPSAKG 195
SPGK + G + GP K G++ R +P P G
Sbjct: 755 --GSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAG 812
Query: 196 PTRLPTHDSD--SADESSDL-------------------PLMKVGICRNEGSQAKPGSPK 234
P D + E D P+ VG +G++ G P
Sbjct: 813 FAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPG 872
Query: 235 KRADTSRQA-------SFHCKESYLPVP-GRFLTSAPRGLTPVAERPAVGELEDSPQKKM 286
S + P P G+ PRG T A RP P
Sbjct: 873 ATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAG 932
Query: 287 QSRAWGKVEVRPSCSGAAAAGALP--QGLSRRKMAGGKKSLGGASQLALGRGFP------ 338
+ + P G A A P QG++ G++ + G RGFP
Sbjct: 933 EKGS-------PGADGPAGAPGTPGPQGIA------GQRGVVGLPGQRGERGFPGLPGPS 979
Query: 339 ----------ACGERLSAAPPEPATFPPFSGVRPQGMSKKPQKP-KHSSPGK--KPAGRK 385
A GER PP P P +G P G S + P SPG+ P +
Sbjct: 980 GEPGKQGPSGASGER---GPPGPMGPPGLAG--PPGESGREGAPGAEGSPGRDGSPGAKG 1034
Query: 386 TRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVRRGEFSSSDP----------NIRA 435
R A P P P + G RGE + P
Sbjct: 1035 DRGETGPAGPPGAPGAPGAPGPVGPAGKSG------DRGETGPAGPAGPVGPVGARGPAG 1088
Query: 436 PQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQQPPGAQG 483
PQ P + G + H Q P PP +Q P GA G
Sbjct: 1089 PQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASG 1136
Score = 40.0 bits (92), Expect = 0.005
Identities = 119/505 (23%), Positives = 159/505 (31%), Gaps = 64/505 (12%)
Query: 17 EGGKKAGSRTASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELIEQGRVV 76
+G A S GAPG + G G K + G P+G ++ + G
Sbjct: 709 KGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKG----ADGSPGKDGVRG 764
Query: 77 LWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEGAAAEGSAENWADAE 136
L G G PG P GD + P P +G P P G A AD +
Sbjct: 765 LTGPIGPPG-PAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPG-ADGQ 822
Query: 137 VGPSGRDVLGHSPGKWQQASAGRLHLCG-PGPVRAWKNP----ERGSKSRWSL------- 184
G G G + K G G PGP+ P RGS
Sbjct: 823 PGAKGEP--GDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAA 880
Query: 185 -RVDPQQPSAK-GPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTSRQ 242
RV P PS GP P + E P + G G PG P +
Sbjct: 881 GRVGPPGPSGNAGP---PGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSP 937
Query: 243 ASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEV-RPSCS 301
+ + PG T P+G+ +R VG ++ E + S
Sbjct: 938 GA----DGPAGAPG---TPGPQGI--AGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPS 988
Query: 302 GAAAAGALPQGLSRRKMAG-----GKKSLGGASQLALGRGFP-ACGERLSAAPPEPATFP 355
GA+ P + +AG G++ GA G P A G+R P P P
Sbjct: 989 GASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAP 1048
Query: 356 PFSG----VRPQGMSKKPQKPKHSSPGKK--PAGRKTRESQAAAREDNDPNRDEVPRAQL 409
G V P G S + + P P G + R D ++ R +
Sbjct: 1049 GAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRG-I 1107
Query: 410 PTHR--------PGLPRLSVRRGEFSSSDP-NIRAPQLPGTSEPSAYS-----PGGLVPR 455
HR PG P +G +S P R P PG++ PG + P
Sbjct: 1108 KGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGP--PGSAGAPGKDGLNGLPGPIGPP 1165
Query: 456 RHAPSGNQQPPVHPPRPERQQQPPG 480
PV PP P PPG
Sbjct: 1166 GPRGRTGDAGPVGPPGPPGPPGPPG 1190
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 53.9 bits (128), Expect = 3e-07
Identities = 59/199 (29%), Positives = 72/199 (36%), Gaps = 10/199 (5%)
Query: 292 GKVEVRPSCSGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEP 351
GK + P G G P G + G KS S +G P G PP P
Sbjct: 76 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPP 135
Query: 352 ATFPPFSGVRPQGMSKKPQKPKHSSP-GKKPAG-RKTRESQAAAREDNDPNRDEVPRAQL 409
P G PQG +K P P G P G K+R S++ + P + Q
Sbjct: 136 PGKP--QGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQG 193
Query: 410 PTHRPGLPR-LSVRRGEFSSSDPNIRAPQLP----GTSEPSAYSPGGLVPRRHAPSGNQQ 464
P PG P+ + G P PQ P SA SP G P+ P G Q
Sbjct: 194 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPG-KPQGPPPQGGNQ 252
Query: 465 PPVHPPRPERQQQPPGAQG 483
P PP P + Q PP G
Sbjct: 253 PQGPPPPPGKPQGPPPQGG 271
Score = 52.8 bits (125), Expect = 8e-07
Identities = 70/262 (26%), Positives = 98/262 (37%), Gaps = 32/262 (12%)
Query: 253 PVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAW----GKVEVRPSCSGAAAAGA 308
P PG+ P+G P G+ + P + +SR+ GK + P G G
Sbjct: 73 PPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGP 132
Query: 309 LPQ-GLSRRKMAGGKKSLGGASQLALGRGFPACGE---RLSAAPP-EPATFPPFSGVRPQ 363
P G + G G +G P G+ R S +PP +P PP G +PQ
Sbjct: 133 PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQ 192
Query: 364 GMSKKPQKPKHSSP--GKKPAG---------------RKTRESQAAAREDNDPNRDEVPR 406
G P KP+ P G KP G K++ +++ + P +
Sbjct: 193 GPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQ 252
Query: 407 AQLPTHRPGLPR-LSVRRGEFSSSDPNIRAPQLP----GTSEPSAYSPGGLVPRRHAPSG 461
Q P PG P+ + G P PQ P G+ S+ SP G P+ P G
Sbjct: 253 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGK-PQGPPPQG 311
Query: 462 NQQPPVHPPRPERQQQPPGAQG 483
QP PP P + Q PP G
Sbjct: 312 GNQPQGPPPPPGKPQGPPPQGG 333
Score = 46.6 bits (109), Expect = 5e-05
Identities = 47/175 (26%), Positives = 60/175 (34%), Gaps = 28/175 (16%)
Query: 335 RGFPACGERLSAAPPEPATFP----PFSGVRPQGMSKKPQKPKHSSP------------- 377
+G P G PP P P P G +PQG P KP+ P
Sbjct: 37 QGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 96
Query: 378 ---GKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPR------LSVRRGEFSS 428
G P G K+R ++ + P + Q P PG P+ + +G
Sbjct: 97 KPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP 156
Query: 429 SDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQQPPGAQG 483
P PQ S S PG P+ P G QP PP P + Q PP G
Sbjct: 157 GKPQGPPPQGDNKSRSSRSPPG--KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG 209
Score = 45.8 bits (107), Expect = 9e-05
Identities = 94/380 (24%), Positives = 118/380 (31%), Gaps = 46/380 (12%)
Query: 115 QGHPFPEGAAAEGSAENWADAEVGPSGRDVLGHSPGKWQ--QASAGRLHLCGPGPVRAWK 172
QG P P G +G + GP PGK Q G P P +
Sbjct: 48 QGPPSPPGKP-QGPPPQGGNQPQGPPP------PPGKPQGPPPQGGNKPQGPPPPGKPQG 100
Query: 173 NPERGSKSRWSLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAK-PG 231
P +G KSR P+ P K P P + P G G++ + P
Sbjct: 101 PPPQGDKSR-----SPRSPPGK-PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP 154
Query: 232 SPKKRADTSRQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAW 291
P K Q + S P PG+ P P G P
Sbjct: 155 PPGKPQGPPPQGDNKSRSSRSP-PGK----------PQGPPPQGGNQPQGPPPPP----- 198
Query: 292 GKVEVRPSCSGAAAAGALPQGLSRRKMA-GGKKSLGGASQLALGRGFPACGERLSAAPPE 350
GK + P G G P G + G KS S +G P G PP
Sbjct: 199 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPP 258
Query: 351 PATFPPFSGVRPQGMSKKPQKPKHSSPGKKP--AGRKTRESQAAAREDNDPNRDEVPRAQ 408
P P G PQG +K P P P G K+R S++ + P + Q
Sbjct: 259 PPGKP--QGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQ 316
Query: 409 LPTHRPGLPRLSVRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHA--PSGNQQPP 466
P PG P+ +G P P +P P G R A P G Q P
Sbjct: 317 GPPPPPGKPQGPPPQGGNKPQGP-------PPPGKPQGPPPQGGSKSRSARSPPGKPQGP 369
Query: 467 VHPPRPERQQQPPGAQGCPR 486
Q PP A G P+
Sbjct: 370 PQQEGNNPQGPPPPAGGNPQ 389
Score = 45.4 bits (106), Expect = 1e-04
Identities = 102/423 (24%), Positives = 132/423 (31%), Gaps = 79/423 (18%)
Query: 81 EGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEGAAAEGSAENWADAEVGPS 140
+G P P QG ++P PPP P P+G G+ P
Sbjct: 48 QGPPSPPGKPQGPPPQGG----NQPQGPPPPPGKPQGPPPQG----GNKPQGPPPPGKPQ 99
Query: 141 GRDVLGHS-------PGKWQ-QASAGRLHLCGPGPVRAWKN---PERGSKSRWSLRVDPQ 189
G G PGK Q G GP P P+ G+K PQ
Sbjct: 100 GPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK--------PQ 151
Query: 190 QPSAKGPTRLPTHDSDSADESSDLPLMKV------GICRNEGSQAKPGSPKKRADTSRQA 243
P G + P D+ SS P K G + +G PG P+
Sbjct: 152 GPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN- 210
Query: 244 SFHCKESYLPVPGRFLTSAPRG--LTPVAERPAVGELEDSPQKKMQSRAW----GKVEVR 297
K P PG+ P+G + A P PQ Q + GK +
Sbjct: 211 ----KPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP 266
Query: 298 PSCSGAAAAGALPQGLSRRKMA-GGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPP 356
P G G P G + GG KS S +G P G PP P P
Sbjct: 267 PPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKP- 325
Query: 357 FSGVRPQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGL 416
G PQG KPQ P P KP G + + + P + + P Q + G
Sbjct: 326 -QGPPPQG-GNKPQGP---PPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGP 380
Query: 417 PRLSVRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQ 476
P + N + PQ P P+G Q P PP+ R
Sbjct: 381 P---------PPAGGNPQQPQAP-------------------PAGQPQGPPRPPQGGRPS 412
Query: 477 QPP 479
+PP
Sbjct: 413 RPP 415
Score = 41.2 bits (95), Expect = 0.002
Identities = 38/135 (28%), Positives = 51/135 (37%), Gaps = 25/135 (18%)
Query: 351 PATFPPFSGVRPQGMSKKPQKPKHSSP--GKKPAGRKTRESQAAAREDNDPNRDEVPRAQ 408
P PP G +PQG P KP+ P G +P G + N+ + P
Sbjct: 36 PQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPP- 94
Query: 409 LPTHRPGLPRLSVRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVH 468
PG P+ +G+ S R+P+ P PG P+ P G QP
Sbjct: 95 -----PGKPQGPPPQGDKS------RSPRSP---------PG--KPQGPPPQGGNQPQGP 132
Query: 469 PPRPERQQQPPGAQG 483
PP P + Q PP G
Sbjct: 133 PPPPGKPQGPPPQGG 147
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 51.2 bits (121), Expect = 2e-06
Identities = 120/496 (24%), Positives = 160/496 (32%), Gaps = 81/496 (16%)
Query: 13 GFDLEGGKKAGSRTASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELIEQ 72
G D + G+K SPG PG + +G G K E+G P G +I
Sbjct: 290 GKDGDKGEKG-----SPGFPGEPGYPGLIGRQGPQGEKGEAGPPGPPGI-------VIGT 337
Query: 73 GRVVLWGREGRPGTPVDDQGDVVDYSFY-LADEPAAI-VPPPSVQGHP-FPEGAAAEGSA 129
G + G G PGTP +G+ F L +P +P P G P FP +G
Sbjct: 338 GPLGEKGERGYPGTP-GPRGEPGPKGFPGLPGQPGPPGLPVPGQAGAPGFPGERGEKGDR 396
Query: 130 ENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNPERGSKSRWSLRVDPQ 189
+ GPSGRD L PG PGP P + + + P
Sbjct: 397 GFPGTSLPGPSGRDGLPGPPG-------------SPGP------PGQPGYTNGIVECQPG 437
Query: 190 QPSAKGPTRLPTHD------SDSADESSDLPLMKVGICRN-------EGSQAKPGSPKKR 236
P +GP +P + + + + R G PG P +
Sbjct: 438 PPGDQGPPGIPGQPGFIGEIGEKGQKGESCLICDIDGYRGPPGPQGPPGEIGFPGQPGAK 497
Query: 237 ADTSRQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAV----GELEDSPQKKMQSRAWG 292
D ++ VPG P+G + +P GE + K G
Sbjct: 498 GDRGLPG----RDGVAGVPG------PQGTPGLIGQPGAKGEPGEFYFDLRLKGDKGDPG 547
Query: 293 KVEVRPSCSGAAAAGALP--QGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPE 350
+P +G A + GL K + G L G G GFP G R PP
Sbjct: 548 -FPGQPGMTGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFP--GSRGDTGPPG 604
Query: 351 PATFPPFSGVRPQGMSKKPQKP-KHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQL 409
P + P + +G + P P PG K K + P P Q
Sbjct: 605 PPGYGPAGPIGDKGQAGFPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGLPGSPGFPGPQG 664
Query: 410 PTHRPGLPRLSVRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHP 469
PG P GE A PG P P G+ G+ PP P
Sbjct: 665 DRGFPGTPGRPGLPGEKG-------AVGQPGIGFPGPPGPKGV----DGLPGDMGPPGTP 713
Query: 470 PRPERQQQP--PGAQG 483
RP P PG QG
Sbjct: 714 GRPGFNGLPGNPGVQG 729
Score = 43.5 bits (101), Expect = 5e-04
Identities = 117/472 (24%), Positives = 152/472 (32%), Gaps = 75/472 (15%)
Query: 29 PGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELIEQGRVVLWGREGRPGTPV 88
PG PG +GVPG E G P G + E G L G G PG P
Sbjct: 748 PGIPGTPGEKGSIGVPGV---PGEHGAIGPPGL----QGIRGEPGPPGLPGSVGSPGVP- 799
Query: 89 DDQGDVVDYSFYLADEPAAIVPPPSVQGHPF---PEGAAAEGSAENWADAEV-GPSGRDV 144
P PP QG P P G E + ++ GP G
Sbjct: 800 -------------GIGPPGARGPPGGQGPPGLSGPPGIKGEKGFPGFPGLDMPGPKGDKG 846
Query: 145 LGHSPGKWQQASAGRLHLCGPGPVRAWKNPE-RGSKSRWSLRVDPQQPSAKGPT---RLP 200
PG Q+ L PG A P GSK + P QP + GP LP
Sbjct: 847 AQGLPGITGQSGLPGL----PGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLP 902
Query: 201 THDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTSRQASFHCKESYLPVPGRFLT 260
D S P G+ ++G PG P D S ++ G+
Sbjct: 903 GEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGS-MDKVDMGSMKGQKGDQGEKGQ--- 958
Query: 261 SAPRGLTPVAERPAVGE--LEDSPQKKMQSRAWGKVEVR--PSCSGAAAAGALPQGLSRR 316
+ P+ E+ + G+ P K Q+ G+ + P SG A LP
Sbjct: 959 -----IGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLP------ 1007
Query: 317 KMAGGKKSLGGASQLALGRGFPAC-GERLSAAPPEPATFPPFSGVRPQGMSKKPQKPKHS 375
G K S+G G G P GE+ P P P G + K +K +
Sbjct: 1008 ---GPKGSVG-------GMGLPGTPGEKGVPGIPGPQGSPGLPGDK----GAKGEKGQAG 1053
Query: 376 SPG-KKPAGRKTRESQAAAREDNDP-NRDEVPRAQLPTHRPGLPRLSVRRGEFSSSDPNI 433
PG P R + Q A P + E +P PG P L G
Sbjct: 1054 PPGIGIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIP-GMPGSPGLKGSPGSVGYPG--- 1109
Query: 434 RAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQQPPGAQGCP 485
+P LPG +P +G P P P Q+ PG+ G P
Sbjct: 1110 -SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTP-GPTGPAGQKGEPGSDGIP 1159
Score = 37.4 bits (85), Expect = 0.033
Identities = 45/156 (28%), Positives = 55/156 (35%), Gaps = 27/156 (17%)
Query: 354 FPPFSGVRPQGMSKKP-QKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTH 412
FP G P+G P QK PG P + TR A+ +P +P P
Sbjct: 62 FPGMQG--PEGPQGPPGQKGDTGEPGL-PGTKGTRGPPGASGYPGNPGLPGIPGQDGPPG 118
Query: 413 RPGLPRLSVRRGEFSSSDP--------NIRAPQLPG----TSEPSAYSPGGL-------- 452
PG+P + +GE P N P LPG E + PG L
Sbjct: 119 PPGIPGCNGTKGERGPLGPPGLPGFAGNPGPPGLPGMKGDPGEILGHVPGMLLKGERGFP 178
Query: 453 -VPRRHAPSG--NQQPPVHPPRPERQQQPPGAQGCP 485
+P P G Q PV PP PPG G P
Sbjct: 179 GIPGTPGPPGLPGLQGPVGPPGFTGPPGPPGPPGPP 214
Score = 34.7 bits (78), Expect = 0.21
Identities = 118/512 (23%), Positives = 160/512 (31%), Gaps = 80/512 (15%)
Query: 29 PGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELIEQGRVVLWGREGRPGTP- 87
PG PG G+PG K E G P G + G G PG P
Sbjct: 108 PGIPGQDGPPGPPGIPGCNGTKGERGPLGPPGLPGFA-------------GNPGPPGLPG 154
Query: 88 -VDDQGDVVDY--SFYLADE------PAAIVPP--PSVQGHPFPEGAAAEGSAEN--WAD 134
D G+++ + L E P PP P +QG P G
Sbjct: 155 MKGDPGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVGPPGFTGPPGPPGPPGPP 214
Query: 135 AEVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVR-----AWKNPERGSKSRWSLRVDP- 188
E G G G K Q +G + G V+ A K E+G K + P
Sbjct: 215 GEKGQMGLSFQGPKGDKGDQGVSGPPGVPGQAQVQEKGDFATKG-EKGQKGEPGFQGMPG 273
Query: 189 ----QQPSAKGPTRLPTHDSDSADESS-DLP--------LMKVGICRNEGSQAKPGSPKK 235
+P GP P D D ++ S P + + G +G PG P
Sbjct: 274 VGEKGEPGKPGPRGKPGKDGDKGEKGSPGFPGEPGYPGLIGRQGPQGEKGEAGPPGPPGI 333
Query: 236 RADTSRQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVE 295
T + Y PG P+G + +P L Q+ A G
Sbjct: 334 VIGTGPLGE-KGERGYPGTPGPRGEPGPKGFPGLPGQPGPPGL----PVPGQAGAPGFPG 388
Query: 296 VRPSCSGAAAAG-ALPQGLSRRKMAGGKKSLGGASQLALGRGFPAC--GERLSAAPPEPA 352
R G +LP R + G S G Q G C G PP
Sbjct: 389 ERGEKGDRGFPGTSLPGPSGRDGLPGPPGSPGPPGQPGYTNGIVECQPGPPGDQGPPGIP 448
Query: 353 TFPPFSGVRPQGMSKKPQKPK----------HSSPGKK-PAGRKTRESQAAAREDND-PN 400
P F G + +K QK + PG + P G Q A+ D P
Sbjct: 449 GQPGFIG----EIGEKGQKGESCLICDIDGYRGPPGPQGPPGEIGFPGQPGAKGDRGLPG 504
Query: 401 RDEVPRAQLPTHRPGLPRLSVRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPS 460
RD V P PGL +GE ++R G +P G+ R +P
Sbjct: 505 RDGVAGVPGPQGTPGLIGQPGAKGEPGEFYFDLRLKGDKG--DPGFPGQPGMTGRAGSPG 562
Query: 461 GNQQPPVHPPRP-------ERQQQPPGAQGCP 485
+ P + P+ + ++ PPG G P
Sbjct: 563 RDGHPGLPGPKGSPGSVGLKGERGPPGGVGFP 594
Score = 32.0 bits (71), Expect = 1.4
Identities = 62/251 (24%), Positives = 79/251 (31%), Gaps = 47/251 (18%)
Query: 16 LEGGKKAGSRTASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELIEQGRV 75
L G K PG+PG +G+PG G G+ S E+G
Sbjct: 1062 LRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSVGYP-GSPGLPGEKGDK 1120
Query: 76 VLWGREGRPGT-----------PVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEGAA 124
L G +G PG P G + A P + G FP
Sbjct: 1121 GLPGLDGIPGVKGEAGLPGTPGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPG 1180
Query: 125 AEGSAENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLCGP-----------GPVRAWKN 173
A+G + + EVG G L SPG S G GP P A +
Sbjct: 1181 AKG--DKGSKGEVGFPG---LAGSPG--IPGSKGEQGFMGPPGPQGQPGLPGSPGHATEG 1233
Query: 174 P--ERGSKSRWSLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPG 231
P +RG + + L P P GP LP D D+ N G PG
Sbjct: 1234 PKGDRGPQGQPGL---PGLPGPMGPPGLPGIDGVKGDKG------------NPGWPGAPG 1278
Query: 232 SPKKRADTSRQ 242
P + D Q
Sbjct: 1279 VPGPKGDPGFQ 1289
Score = 30.8 bits (68), Expect = 3.1
Identities = 27/77 (35%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 29 PGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELIEQGRVVLWGREGRPGTPV 88
PG PG G D G PG +G T P GF G L G G PGTP
Sbjct: 1392 PGPPGIP--GFD-GAPGQKGEMGPAGPTGPRGFPGPP-------GPDGLPGSMGPPGTPS 1441
Query: 89 DDQGDVVDYSFYLADEP 105
D G +V D+P
Sbjct: 1442 VDHGFLVTRHSQTIDDP 1458
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 50.8 bits (120), Expect = 3e-06
Identities = 127/501 (25%), Positives = 166/501 (33%), Gaps = 104/501 (20%)
Query: 29 PGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELIEQGRVVLWGREGRPGTPV 88
PG PG D GVPG G GF E S G L G G PGTP
Sbjct: 671 PGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGS----PGAQGLQGPRGLPGTPG 726
Query: 89 DD--QGDVVDYSFYLADEPAAIVPPPSVQGHPFPEGAAAEGSAENWADAEVGPSG-RDVL 145
D +G A PA PP QG P +G E A A GP G R +
Sbjct: 727 TDGPKG---------ASGPAG---PPGAQGPPGLQGMPGERGAAGIA----GPKGDRGDV 770
Query: 146 GHSPGKWQQASAGRLHLCGP--GPVRAWKNPERGSKSRWSLRVDPQQPSAKGPTRLPTHD 203
G + G L GP P A N E+G V P P+ R
Sbjct: 771 GEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKG-------EVGPPGPAGSAGAR----- 818
Query: 204 SDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTSRQASFHCKESYLPVP-GRFLTSA 262
+ P G G+ +PG+ ++ + ++ ++ P P G
Sbjct: 819 GAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKG-----DAGAPGPQGPSGAPG 873
Query: 263 PRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGAAAAGALPQGLSRRKMAGGK 322
P+G T V + P A G+V S G P G S + G
Sbjct: 874 PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPG--PPGPSGK---DGP 928
Query: 323 KSLGGASQLALGRGFPACGERLSAAPP----EPATFPPFSGVR----PQGMSKK------ 368
K G S G P G + A PP EP P SG PQG++ +
Sbjct: 929 KGARGDSGPPGRAGEP--GLQGPAGPPGEKGEPGDDGP-SGAEGPPGPQGLAGQRGIVGL 985
Query: 369 -PQKPKHSSPG-KKPAGRKTRESQAAARED----------------NDPNRDEVPRAQLP 410
Q+ + PG P+G ++ A D +P R+ P A P
Sbjct: 986 PGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 1045
Query: 411 THRPGLPRLSVRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQ------- 463
R G + RGE + + AP PG P + P G P+G Q
Sbjct: 1046 PGRDGAAGVKGDRGETGA----VGAPGAPG--PPGSPGPAG-------PTGKQGDRGEAG 1092
Query: 464 -QPPVHPPRPERQQQPPGAQG 483
Q P+ P P + G QG
Sbjct: 1093 AQGPMGPSGPAGARGIQGPQG 1113
Score = 45.4 bits (106), Expect = 1e-04
Identities = 125/496 (25%), Positives = 158/496 (31%), Gaps = 113/496 (22%)
Query: 18 GGKKAGSRTASPGAPGAHSHGLDLGVPGSGDGKSESGFTD---PEGFSFESESELIEQGR 74
G + + G PG G PG+ K E+G T PEG E G
Sbjct: 342 GARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQ-GPRGEPGTPGS 400
Query: 75 VVLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPP--PSVQGHPFPEGAAAEGSAENW 132
G G PGT D + + A P P P +G P P+GA
Sbjct: 401 PGPAGASGNPGT------DGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGP------ 448
Query: 133 ADAEVGPSGRDVLGHSPG----KWQQASAGRLHLCGP----GPV-RAWKNPERGSKSRWS 183
+GP G+ PG K +Q G GP GP K RG
Sbjct: 449 ----LGPKGQT---GEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVG 501
Query: 184 LRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTSRQA 243
P + A G P D + + + G+ +G+ PG P +
Sbjct: 502 PIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPG------ 555
Query: 244 SFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGA 303
+PG RGLT RP + PQ K+ + RP G
Sbjct: 556 ----------LPGA------RGLTG---RPG----DAGPQGKVGPSGAPGEDGRPGPPGP 592
Query: 304 AAA----GAL----PQGLSRRKMAGGKKSLGGASQLALGRGFPAC-GERLSAAPPEPATF 354
A G + P+G + G+K L GA L RG P GE +A PP PA
Sbjct: 593 QGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGL---RGLPGKDGETGAAGPPGPAGP 649
Query: 355 PPFSGVR----PQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLP 410
G + P G P P G KP + P P P
Sbjct: 650 AGERGEQGAPGPSGFQGLPGPPGPPGEGGKPG------------DQGVPGEAGAPGLVGP 697
Query: 411 THRPGLPRLSVRRGEFSSSDPNIRAPQ-LPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHP 469
G P RG S ++ P+ LPGT P P G SG P
Sbjct: 698 RGERGFPG---ERG--SPGAQGLQGPRGLPGT--PGTDGPKGA-------SG-------P 736
Query: 470 PRPERQQQPPGAQGCP 485
P Q PPG QG P
Sbjct: 737 AGPPGAQGPPGLQGMP 752
Score = 38.5 bits (88), Expect = 0.015
Identities = 126/504 (25%), Positives = 158/504 (31%), Gaps = 100/504 (19%)
Query: 13 GFDLEGGK--KAGSR-----------TASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPE 59
G D E GK KAG R +PG PG H G PG K E+G +
Sbjct: 252 GDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHR---GYPGLDGAKGEAGAPGVK 308
Query: 60 GFSFE-----SESELIEQGRVVLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSV 114
G S S + +G GR G G D +P PP V
Sbjct: 309 GESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGND---------GQPGPAGPPGPV 359
Query: 115 ---QGHPFPEGAAAEGSAENWADAEVGPSG-RDVLGHSPGKWQQASAGRLHLCGPGPVRA 170
G FP A+G E GP+G R G + + + G PGP A
Sbjct: 360 GPAGGPGFPGAPGAKG--------EAGPTGARGPEGAQGPRGEPGTPG-----SPGPAGA 406
Query: 171 WKNP-------ERGSKSRWSLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRN 223
NP +GS + P P +GP P + + GI
Sbjct: 407 SGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGP---PGPQGATGPLGPKGQTGEPGIAGF 463
Query: 224 EGSQAKPGSPKKRADTSR--QASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDS 281
+G Q G P A K PG P G P ER A G
Sbjct: 464 KGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGV---GPIG--PPGERGAPG----- 513
Query: 282 PQKKMQSRAWGKVEVRPSCSGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACG 341
+R + + GA P GL+ K A G G L RG
Sbjct: 514 ------NRGFPGQDGLAGPKGAPGERG-PSGLAGPKGANGDPGRPGEPGLPGARGLTG-- 564
Query: 342 ERLSAAPPEPATFPPFSGVRPQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNR 401
R A P+ P SG G +P P +P + A E
Sbjct: 565 -RPGDAGPQGKVGP--SGA--PGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGE 619
Query: 402 DEVPRAQLPTHRPGLPRLSVRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSG 461
+P A PGL L + GE ++ P PG + P+ P PSG
Sbjct: 620 KGLPGA------PGLRGLPGKDGETGAAGP-------PGPAGPAGERGEQGAP---GPSG 663
Query: 462 NQQPPVHPPRPERQQQPPGAQGCP 485
Q P PP P + PG QG P
Sbjct: 664 FQGLP-GPPGPPGEGGKPGDQGVP 686
Score = 34.3 bits (77), Expect = 0.28
Identities = 116/500 (23%), Positives = 147/500 (29%), Gaps = 98/500 (19%)
Query: 17 EGGKKAGSRTASPGAPGAHSHGLDLGVPGSGDG---------KSESGFTDPEGFSFESES 67
+GG+ PG GA+ ++G PG + E+G P GF+ +
Sbjct: 782 DGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGA 841
Query: 68 E-----LIEQGRVVLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEG 122
+ EQG G G PG P G P + P +G P G
Sbjct: 842 DGQPGAKGEQGEAGQKGDAGAPG-PQGPSGAPGPQG------PTGVTGPKGARGAQGPPG 894
Query: 123 AAAEGSAENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNPERGSKSRW 182
A A VGP G + PG G GP R P G
Sbjct: 895 ATGFPGAA----GRVGPPGSNGNPGPPG-----PPGPSGKDGPKGARGDSGPP-GRAGEP 944
Query: 183 SLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMK------VGICRNEGSQAKPGSPKKR 236
L+ P KG P D S E P VG+ G + PG P
Sbjct: 945 GLQGPAGPPGEKGE---PGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPS 1001
Query: 237 ADTSRQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEV 296
+ +Q + P PG P GLT A P
Sbjct: 1002 GEPGKQGAPGASGDRGP-PG---PVGPPGLTGPAGEPG---------------------- 1035
Query: 297 RPSCSGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPP 356
R GA G R A G K G + G P P PA
Sbjct: 1036 REGSPGA-------DGPPGRDGAAGVKGDRGETGAVGAPGAPG-----PPGSPGPAGPTG 1083
Query: 357 FSGVRPQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHR--- 413
G R + ++ P P PAG + + R D + R L HR
Sbjct: 1084 KQGDRGEAGAQGPMGP------SGPAGARGIQGPQGPRGDKGEAGEPGERG-LKGHRGFT 1136
Query: 414 -----PGLPRLSVRRGEFSSSDPN-IRAPQLPGTSEPSAYSPGGLVPRRHAPSG--NQQP 465
PG P S +G + P+ R P PG PS +P P G +
Sbjct: 1137 GLQGLPGPPGPSGDQGASGPAGPSGPRGP--PGPVGPSGKDGANGIPGPIGPPGPRGRSG 1194
Query: 466 PVHPPRPERQQQPPGAQGCP 485
P P PPG G P
Sbjct: 1195 ETGPAGPPGNPGPPGPPGPP 1214
Score = 30.0 bits (66), Expect = 5.3
Identities = 37/143 (25%), Positives = 52/143 (36%), Gaps = 22/143 (15%)
Query: 16 LEGGKKAGSRTASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELIEQGRV 75
++G + +PGAPG G G + E+G P G S + + I QG
Sbjct: 1054 VKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI-QGPQ 1112
Query: 76 VLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEGAAAEGSAENWA-- 133
G +G G P ++G F +QG P P G + + A A
Sbjct: 1113 GPRGDKGEAGEP-GERGLKGHRGF------------TGLQGLPGPPGPSGDQGASGPAGP 1159
Query: 134 ------DAEVGPSGRDVLGHSPG 150
VGPSG+D PG
Sbjct: 1160 SGPRGPPGPVGPSGKDGANGIPG 1182
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 50.8 bits (120), Expect = 3e-06
Identities = 127/501 (25%), Positives = 166/501 (33%), Gaps = 104/501 (20%)
Query: 29 PGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELIEQGRVVLWGREGRPGTPV 88
PG PG D GVPG G GF E S G L G G PGTP
Sbjct: 602 PGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGS----PGAQGLQGPRGLPGTPG 657
Query: 89 DD--QGDVVDYSFYLADEPAAIVPPPSVQGHPFPEGAAAEGSAENWADAEVGPSG-RDVL 145
D +G A PA PP QG P +G E A A GP G R +
Sbjct: 658 TDGPKG---------ASGPAG---PPGAQGPPGLQGMPGERGAAGIA----GPKGDRGDV 701
Query: 146 GHSPGKWQQASAGRLHLCGP--GPVRAWKNPERGSKSRWSLRVDPQQPSAKGPTRLPTHD 203
G + G L GP P A N E+G V P P+ R
Sbjct: 702 GEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKG-------EVGPPGPAGSAGAR----- 749
Query: 204 SDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTSRQASFHCKESYLPVP-GRFLTSA 262
+ P G G+ +PG+ ++ + ++ ++ P P G
Sbjct: 750 GAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKG-----DAGAPGPQGPSGAPG 804
Query: 263 PRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGAAAAGALPQGLSRRKMAGGK 322
P+G T V + P A G+V S G P G S + G
Sbjct: 805 PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPG--PPGPSGK---DGP 859
Query: 323 KSLGGASQLALGRGFPACGERLSAAPP----EPATFPPFSGVR----PQGMSKK------ 368
K G S G P G + A PP EP P SG PQG++ +
Sbjct: 860 KGARGDSGPPGRAGEP--GLQGPAGPPGEKGEPGDDGP-SGAEGPPGPQGLAGQRGIVGL 916
Query: 369 -PQKPKHSSPG-KKPAGRKTRESQAAARED----------------NDPNRDEVPRAQLP 410
Q+ + PG P+G ++ A D +P R+ P A P
Sbjct: 917 PGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 976
Query: 411 THRPGLPRLSVRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQ------- 463
R G + RGE + + AP PG P + P G P+G Q
Sbjct: 977 PGRDGAAGVKGDRGETGA----VGAPGAPG--PPGSPGPAG-------PTGKQGDRGEAG 1023
Query: 464 -QPPVHPPRPERQQQPPGAQG 483
Q P+ P P + G QG
Sbjct: 1024 AQGPMGPSGPAGARGIQGPQG 1044
Score = 45.4 bits (106), Expect = 1e-04
Identities = 125/496 (25%), Positives = 158/496 (31%), Gaps = 113/496 (22%)
Query: 18 GGKKAGSRTASPGAPGAHSHGLDLGVPGSGDGKSESGFTD---PEGFSFESESELIEQGR 74
G + + G PG G PG+ K E+G T PEG E G
Sbjct: 273 GARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQ-GPRGEPGTPGS 331
Query: 75 VVLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPP--PSVQGHPFPEGAAAEGSAENW 132
G G PGT D + + A P P P +G P P+GA
Sbjct: 332 PGPAGASGNPGT------DGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGP------ 379
Query: 133 ADAEVGPSGRDVLGHSPG----KWQQASAGRLHLCGP----GPV-RAWKNPERGSKSRWS 183
+GP G+ PG K +Q G GP GP K RG
Sbjct: 380 ----LGPKGQT---GEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVG 432
Query: 184 LRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTSRQA 243
P + A G P D + + + G+ +G+ PG P +
Sbjct: 433 PIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPG------ 486
Query: 244 SFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGA 303
+PG RGLT RP + PQ K+ + RP G
Sbjct: 487 ----------LPGA------RGLTG---RPG----DAGPQGKVGPSGAPGEDGRPGPPGP 523
Query: 304 AAA----GAL----PQGLSRRKMAGGKKSLGGASQLALGRGFPAC-GERLSAAPPEPATF 354
A G + P+G + G+K L GA L RG P GE +A PP PA
Sbjct: 524 QGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGL---RGLPGKDGETGAAGPPGPAGP 580
Query: 355 PPFSGVR----PQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLP 410
G + P G P P G KP + P P P
Sbjct: 581 AGERGEQGAPGPSGFQGLPGPPGPPGEGGKPG------------DQGVPGEAGAPGLVGP 628
Query: 411 THRPGLPRLSVRRGEFSSSDPNIRAPQ-LPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHP 469
G P RG S ++ P+ LPGT P P G SG P
Sbjct: 629 RGERGFPG---ERG--SPGAQGLQGPRGLPGT--PGTDGPKGA-------SG-------P 667
Query: 470 PRPERQQQPPGAQGCP 485
P Q PPG QG P
Sbjct: 668 AGPPGAQGPPGLQGMP 683
Score = 38.5 bits (88), Expect = 0.015
Identities = 126/504 (25%), Positives = 158/504 (31%), Gaps = 100/504 (19%)
Query: 13 GFDLEGGK--KAGSR-----------TASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPE 59
G D E GK KAG R +PG PG H G PG K E+G +
Sbjct: 183 GDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHR---GYPGLDGAKGEAGAPGVK 239
Query: 60 GFSFE-----SESELIEQGRVVLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSV 114
G S S + +G GR G G D +P PP V
Sbjct: 240 GESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGND---------GQPGPAGPPGPV 290
Query: 115 ---QGHPFPEGAAAEGSAENWADAEVGPSG-RDVLGHSPGKWQQASAGRLHLCGPGPVRA 170
G FP A+G E GP+G R G + + + G PGP A
Sbjct: 291 GPAGGPGFPGAPGAKG--------EAGPTGARGPEGAQGPRGEPGTPG-----SPGPAGA 337
Query: 171 WKNP-------ERGSKSRWSLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRN 223
NP +GS + P P +GP P + + GI
Sbjct: 338 SGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGP---PGPQGATGPLGPKGQTGEPGIAGF 394
Query: 224 EGSQAKPGSPKKRADTSR--QASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDS 281
+G Q G P A K PG P G P ER A G
Sbjct: 395 KGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGV---GPIG--PPGERGAPG----- 444
Query: 282 PQKKMQSRAWGKVEVRPSCSGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACG 341
+R + + GA P GL+ K A G G L RG
Sbjct: 445 ------NRGFPGQDGLAGPKGAPGERG-PSGLAGPKGANGDPGRPGEPGLPGARGLTG-- 495
Query: 342 ERLSAAPPEPATFPPFSGVRPQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNR 401
R A P+ P SG G +P P +P + A E
Sbjct: 496 -RPGDAGPQGKVGP--SGA--PGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGE 550
Query: 402 DEVPRAQLPTHRPGLPRLSVRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSG 461
+P A PGL L + GE ++ P PG + P+ P PSG
Sbjct: 551 KGLPGA------PGLRGLPGKDGETGAAGP-------PGPAGPAGERGEQGAP---GPSG 594
Query: 462 NQQPPVHPPRPERQQQPPGAQGCP 485
Q P PP P + PG QG P
Sbjct: 595 FQGLP-GPPGPPGEGGKPGDQGVP 617
Score = 34.3 bits (77), Expect = 0.28
Identities = 116/500 (23%), Positives = 147/500 (29%), Gaps = 98/500 (19%)
Query: 17 EGGKKAGSRTASPGAPGAHSHGLDLGVPGSGDG---------KSESGFTDPEGFSFESES 67
+GG+ PG GA+ ++G PG + E+G P GF+ +
Sbjct: 713 DGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGA 772
Query: 68 E-----LIEQGRVVLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEG 122
+ EQG G G PG P G P + P +G P G
Sbjct: 773 DGQPGAKGEQGEAGQKGDAGAPG-PQGPSGAPGPQG------PTGVTGPKGARGAQGPPG 825
Query: 123 AAAEGSAENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNPERGSKSRW 182
A A VGP G + PG G GP R P G
Sbjct: 826 ATGFPGAA----GRVGPPGSNGNPGPPG-----PPGPSGKDGPKGARGDSGPP-GRAGEP 875
Query: 183 SLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMK------VGICRNEGSQAKPGSPKKR 236
L+ P KG P D S E P VG+ G + PG P
Sbjct: 876 GLQGPAGPPGEKGE---PGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPS 932
Query: 237 ADTSRQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEV 296
+ +Q + P PG P GLT A P
Sbjct: 933 GEPGKQGAPGASGDRGP-PG---PVGPPGLTGPAGEPG---------------------- 966
Query: 297 RPSCSGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPP 356
R GA G R A G K G + G P P PA
Sbjct: 967 REGSPGA-------DGPPGRDGAAGVKGDRGETGAVGAPGAPG-----PPGSPGPAGPTG 1014
Query: 357 FSGVRPQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHR--- 413
G R + ++ P P PAG + + R D + R L HR
Sbjct: 1015 KQGDRGEAGAQGPMGP------SGPAGARGIQGPQGPRGDKGEAGEPGERG-LKGHRGFT 1067
Query: 414 -----PGLPRLSVRRGEFSSSDPN-IRAPQLPGTSEPSAYSPGGLVPRRHAPSG--NQQP 465
PG P S +G + P+ R P PG PS +P P G +
Sbjct: 1068 GLQGLPGPPGPSGDQGASGPAGPSGPRGP--PGPVGPSGKDGANGIPGPIGPPGPRGRSG 1125
Query: 466 PVHPPRPERQQQPPGAQGCP 485
P P PPG G P
Sbjct: 1126 ETGPAGPPGNPGPPGPPGPP 1145
Score = 30.0 bits (66), Expect = 5.3
Identities = 37/143 (25%), Positives = 52/143 (36%), Gaps = 22/143 (15%)
Query: 16 LEGGKKAGSRTASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELIEQGRV 75
++G + +PGAPG G G + E+G P G S + + I QG
Sbjct: 985 VKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI-QGPQ 1043
Query: 76 VLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEGAAAEGSAENWA-- 133
G +G G P ++G F +QG P P G + + A A
Sbjct: 1044 GPRGDKGEAGEP-GERGLKGHRGF------------TGLQGLPGPPGPSGDQGASGPAGP 1090
Query: 134 ------DAEVGPSGRDVLGHSPG 150
VGPSG+D PG
Sbjct: 1091 SGPRGPPGPVGPSGKDGANGIPG 1113
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 50.1 bits (118), Expect = 5e-06
Identities = 121/486 (24%), Positives = 165/486 (33%), Gaps = 93/486 (19%)
Query: 17 EGGKKAGSRTASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELIEQGRVV 76
+G + R +PG PGA G+PG E G P+G + ++I
Sbjct: 1304 DGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKG-EPGAPGQVIGGEGPG 1362
Query: 77 LWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEGAAAEGSAENWADAE 136
L GR+G PG P G P + P +G P G A +G + E
Sbjct: 1363 LPGRKGDPG-PSGPPG------------PRGPLGDPGPRGPPGLPGTAMKG--DKGDRGE 1407
Query: 137 VGPSGRDVLGHSPGKWQQASAGRLHLCGP-GPV-RAWKNPERGSKSRWS--LRVDPQQPS 192
GP G G +PG + G GP GPV K E+G + L P P
Sbjct: 1408 RGPPGPGEGGIAPG--EPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPG 1465
Query: 193 AKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTSRQASFHCKESYL 252
+GP P D PL + G +G + PG
Sbjct: 1466 EQGPRGPPGAIGPKGDRGFPGPLGEAG---EKGERGPPG--------------------- 1501
Query: 253 PVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKV--EVRPSCSGAAAAGALP 310
+ RGL VA RP E P + G+ P+ G A AG P
Sbjct: 1502 -------PAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAG--P 1552
Query: 311 QGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGVRPQGMSKKPQ 370
+G K G GA+ + RG P + P P P G P G++ +
Sbjct: 1553 KG---EKGDVGPAGPRGATGVQGERGPPGL---VLPGDPGPKGDPGDRG--PIGLTGRAG 1604
Query: 371 KPKHSS-PGKK----------PAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRL 419
P S PG+K P G + R+ + + D P D PGLP
Sbjct: 1605 PPGDSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGD-----------PGLPGK 1653
Query: 420 SVRRGEFSSSDPNIRAP--QLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPER-QQ 476
+ RG P +R P + +P G P P G++ P P P R
Sbjct: 1654 AGERG--LRGAPGVRGPVGEKGDQGDPGEDGRNG-SPGSSGPKGDRGEPGPPGPPGRLVD 1710
Query: 477 QPPGAQ 482
PGA+
Sbjct: 1711 TGPGAR 1716
Score = 43.5 bits (101), Expect = 5e-04
Identities = 120/486 (24%), Positives = 148/486 (30%), Gaps = 97/486 (19%)
Query: 29 PGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELIEQGRVVLWGREGRPGTPV 88
PG PG G+PG G E+G G E + E EQGR G G PG P
Sbjct: 2036 PGKPGIP------GLPGRAGGVGEAGRPGERGERGE-KGERGEQGRDGPPGLPGTPGPP- 2087
Query: 89 DDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEGAAAEGSAENWADAEVGPSG-RDVLGH 147
G V DEP P + G P G E ++ + GP G R V G
Sbjct: 2088 GPPGPKVS-----VDEPG-----PGLSGEQGPPGLKG-AKGEPGSNGDQGPKGDRGVPGI 2136
Query: 148 SPGKWQQASAGRLHLCGPGPVRAWKNPERGSKSRWSLRVDPQQPSAKGPTRLPTHDSDSA 207
+ + PGP NP G + +P +GP P
Sbjct: 2137 KGDRGE-----------PGPRGQDGNP--GLPGERGMAGPEGKPGLQGPRGPPGPVGGHG 2183
Query: 208 DESSDLPLMKVGICRNEGSQAKPGSPKKRADTSRQASFHCKESYLPVPGRFLTSAPRGLT 267
D P G+ G Q G + +T PGR LT P G
Sbjct: 2184 DPG---PPGAPGLAGPAGPQGPSGLKGEPGETGP-------------PGRGLTG-PTGAV 2226
Query: 268 PVAERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGAAAAGALPQGLSRRKMAGGKKSLGG 327
+ P L PQ P G P G R A GK G
Sbjct: 2227 GLPGPPGPSGLV-GPQGS------------PGLPGQVGETGKP-GAPGRDGASGKDGDRG 2272
Query: 328 ASQLALGRGFPACGERLSAAPPEPATFPPFSGVRPQGMSKKPQKPKH------SSPGKK- 380
+ + G P G P P P + V G + P PG K
Sbjct: 2273 SPGVPGSPGLP--GPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKG 2330
Query: 381 ----PAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVRRGEFSSSDPNIRA- 435
P R + A E DP D A P G P + V P ++
Sbjct: 2331 DRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGD 2390
Query: 436 ---PQLPGTSEPSAYSPGGLVPR----RHAPSGNQ-----------QPPVHPPRPERQQQ 477
P LPG + PG PR + PSG + P+ PP P
Sbjct: 2391 LGLPGLPGAPGVVGF-PGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPGSVG 2449
Query: 478 PPGAQG 483
PPGA G
Sbjct: 2450 PPGASG 2455
Score = 37.4 bits (85), Expect = 0.033
Identities = 113/494 (22%), Positives = 142/494 (28%), Gaps = 92/494 (18%)
Query: 15 DLEGGKKAGSRTASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELIEQGR 74
D G + G G D G+PG+ + GF P
Sbjct: 1710 DTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPP--------------- 1754
Query: 75 VVLWGREGRPGT--PVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEG--AAAEGSAE 130
G +G PG P ++GD PP + G +G AA S
Sbjct: 1755 ----GPQGDPGVRGPAGEKGD---------------RGPPGLDGRSGLDGKPGAAGPSGP 1795
Query: 131 NWADAEVGPSGRDVLGHSPGKWQQASAGRLHLCGPG--PVRAWKNPERGSKSRWSLRVDP 188
N A + G GRD L PG G L GP P K E G +P
Sbjct: 1796 NGAAGKAGDPGRDGL---PG-----LRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNGEP 1847
Query: 189 QQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTSRQASFHCK 248
P G S E D P + G G Q PG P
Sbjct: 1848 GDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGLP--------------- 1892
Query: 249 ESYLPVPGRFLTSAPRGLTPVAERPAVGELEDS--PQKKMQSRAWGKVEVRPSCSGAAAA 306
+ PG+ P G P +R G + P ++ G V P+
Sbjct: 1893 -GPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSV---PNVDRLLET 1948
Query: 307 GALPQGLSRRKMAGGKKSLGGASQLALGRGFPA--CGERLSAAPPEPATFPPFSGVRPQG 364
+ R + +S G + R P GE+ P FP G++
Sbjct: 1949 AGIKASALREIVETWDESSGSFLPVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDR 2008
Query: 365 MSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVRRG 424
PQ P PG R A E P +P G P RG
Sbjct: 2009 GDPGPQGP----PGLALGERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERG 2064
Query: 425 EFSSSDPNIR--APQLPGTSEPSAYSPGGLVPRRHAP------SGNQQPP-----VHPPR 471
E R P LPGT P PG P+ SG Q PP P
Sbjct: 2065 EKGERGEQGRDGPPGLPGTPGP----PGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPG 2120
Query: 472 PERQQQPPGAQGCP 485
Q P G +G P
Sbjct: 2121 SNGDQGPKGDRGVP 2134
Score = 35.4 bits (80), Expect = 0.13
Identities = 60/242 (24%), Positives = 89/242 (36%), Gaps = 68/242 (28%)
Query: 16 LEGGKKAGSRTASPGAPGAHSHGLDL---GVPGSGDGKSESGFTDPEGFSFESESELIEQ 72
L+G K PG PG H ++ GVPG + G P+G
Sbjct: 2636 LDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDR---------- 2685
Query: 73 GRVVLWGREGRPGTPVDDQGD--------VVDYSFYLADEPAAIVP-PPSVQGHPFPEGA 123
G +G+PG P DQG+ + + ++ +A P PP G PEG
Sbjct: 2686 ------GFDGQPG-PKGDQGEKGERGTPGIGGFPGPSGNDGSAGPPGPPGSVGPRGPEGL 2738
Query: 124 AAEGSAENWADAEVGPSGRDVLGHSPG----KWQQASAGRLHLCGPGPVRAWKNPERGSK 179
+ E GP G V+G +PG ++ GR PGP RG K
Sbjct: 2739 QGQ-------KGERGPPGERVVG-APGVPGAPGERGEQGR-----PGPA-----GPRGEK 2780
Query: 180 SRWSLRVDP------QQPS----------AKGPTRLPTHDSDSA-DESSDLPLMKVGICR 222
+L D Q+ S A G LP++ +D+A + +P+++V
Sbjct: 2781 GEAALTEDDIRGFVRQEMSQHCACQGQFIASGSRPLPSYAADTAGSQLHAVPVLRVSHAE 2840
Query: 223 NE 224
E
Sbjct: 2841 EE 2842
Score = 34.7 bits (78), Expect = 0.21
Identities = 121/491 (24%), Positives = 150/491 (30%), Gaps = 93/491 (18%)
Query: 13 GFDLEGGKKAGSRTASPGAP-GAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELIE 71
G D G A P P GA D G G + E G P G + E
Sbjct: 1776 GLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPP-GLPGKPGE 1834
Query: 72 QGRVVLWGREGRPGTPVDD-----QGDVVDYSFYLADEP------AAIVPPPSVQGHPFP 120
G+ L G+ G PG P +D +GD D P I+ P G P P
Sbjct: 1835 DGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGLPGP 1894
Query: 121 EGAAAEGSAENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNPERGSKS 180
G +G GP G G + K +Q G L G E GS
Sbjct: 1895 VGPPGQGFP--GVPGGTGPKGD--RGETGSKGEQGLPGERGLRG----------EPGSVP 1940
Query: 181 RWSLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTS 240
++ A + +S+ +P + G + G Q PG
Sbjct: 1941 NVDRLLETAGIKASALREIVETWDESSGSFLPVPERRRGPKGDSGEQGPPG--------- 1991
Query: 241 RQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSC 300
KE + PG RG P + E P P
Sbjct: 1992 -------KEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGP---------------PGP 2029
Query: 301 SGAAAAGALP--QGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFS 358
SG A P GL R AGG G + RG GER P P
Sbjct: 2030 SGLAGEPGKPGIPGLPGR--AGGVGEAGRPGERG-ERG--EKGERGEQGRDGPPGLPGTP 2084
Query: 359 GVRPQGMSKKPQKPKHS--SPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGL 416
G P G P PK S PG +G + A+ + N D+ P+ G+
Sbjct: 2085 G--PPG----PPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGD-----RGV 2133
Query: 417 PRLSVRRGEFS--SSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPER 474
P + RGE D N P LPG E P G P P G PP P
Sbjct: 2134 PGIKGDRGEPGPRGQDGN---PGLPG--ERGMAGPEG-KPGLQGPRG-------PPGPVG 2180
Query: 475 QQQPPGAQGCP 485
PG G P
Sbjct: 2181 GHGDPGPPGAP 2191
Score = 30.4 bits (67), Expect = 4.0
Identities = 67/271 (24%), Positives = 81/271 (29%), Gaps = 79/271 (29%)
Query: 11 GAGFDLEGGKKAGSRTASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELI 70
G DL G A PG G G PG + G P+GF +
Sbjct: 2317 GLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFKGDP----- 2371
Query: 71 EQGRVVLWGREGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEGAAAEGSAE 130
V + G G PG P +GD+ L P A P V G P G E
Sbjct: 2372 ---GVGVPGSPGPPGPP-GVKGDL-----GLPGLPGA----PGVVGFPGQTGPRGE---- 2414
Query: 131 NWADAEVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNPERGSKSRWSLRVDPQQ 190
+ GPSG L PG+ PGP+ P
Sbjct: 2415 ---MGQPGPSGERGLAGPPGREGI----------PGPLG-----------------PPGP 2444
Query: 191 PSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTSRQASFHCKES 250
P + GP D D LP G + + G P R + R
Sbjct: 2445 PGSVGPPGASGLKGDKGDPGVGLP----------GPRGERGEPGIRGEDGR--------- 2485
Query: 251 YLPVPGRFLTSAPRGLT-PVAERPAVGELED 280
PG+ PRGLT P R GE D
Sbjct: 2486 ----PGQ---EGPRGLTGPPGSRGERGEKGD 2509
Score = 30.4 bits (67), Expect = 4.0
Identities = 112/455 (24%), Positives = 139/455 (30%), Gaps = 89/455 (19%)
Query: 28 SPGAPGAHSHGLDLGVPGSGDGKSESGF---TDPEGFSFESESELIEQGRVVLWGREGRP 84
SPG PG DLG+PG GF T P G E+G GREG P
Sbjct: 2378 SPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRG-EMGQPGPSGERGLAGPPGREGIP 2436
Query: 85 GTPVDDQGDVVDYSFYLADEPAAIVPP-----------PSVQGHPFPEGAAAEGSAENWA 133
G P+ G P ++ PP P V G P P G E
Sbjct: 2437 G-PLGPPG-----------PPGSVGPPGASGLKGDKGDPGV-GLPGPRGERGEPGIRG-E 2482
Query: 134 DAEVGPSGRDVLGHSPG-------KWQQASAGRLHLCGPGPVRAWKNPERGSKSRWSLRV 186
D G G L PG K SAG G V RG+K R
Sbjct: 2483 DGRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDMGERG 2542
Query: 187 DPQQPSAKGPTRLPTHDSDSADE-------SSDLPLMK-----------VGICRNEGSQA 228
KGP D + S+ LP ++ GI + GS
Sbjct: 2543 PRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQPGAAGIPGDPGSPG 2602
Query: 229 KPGSPKKRADTSRQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQS 288
K G P R + G PRGL ER G +K +
Sbjct: 2603 KDGVPGIRGE----------------KGDVGFMGPRGLK--GERGVKGACGLDGEKGDKG 2644
Query: 289 RAWGKVEVRPSCSGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPA-------CG 341
A RP +G P G+ + A GK+ L G RGF G
Sbjct: 2645 EA--GPPGRPGLAGHKGEMGEP-GVPGQSGAPGKEGLIGPKG---DRGFDGQPGPKGDQG 2698
Query: 342 ERLSAAPPEPATFPPFSGVRPQGMSKKPQKPKHSSPGKKPA--GRKTRESQAAAREDNDP 399
E+ P FP SG G + P P P G+K R P
Sbjct: 2699 EKGERGTPGIGGFPGPSG--NDGSAGPPGPPGSVGPRGPEGLQGQKGERGPPGERVVGAP 2756
Query: 400 NRDEVPRAQLPTHRPGLPRLSVRRGEFSSSDPNIR 434
P + RPG +GE + ++ +IR
Sbjct: 2757 GVPGAPGERGEQGRPGPAGPRGEKGEAALTEDDIR 2791
Score = 29.6 bits (65), Expect = 6.9
Identities = 52/212 (24%), Positives = 66/212 (31%), Gaps = 34/212 (16%)
Query: 25 RTASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELIEQGRVVLWGREGRP 84
+ +PG GA D G PG G P+G + + Q V L G +G
Sbjct: 2255 KPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAP--GQAVVGLPGAKGEK 2312
Query: 85 GTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEGAAAEGS-----AENWADAEVGP 139
G P GD+V EP A +G P P G E + D + G
Sbjct: 2313 GAPGGLAGDLV-------GEPGA----KGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGA 2361
Query: 140 SGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNPERGSKSRWSLRVDPQQPSAKGPTRL 199
G PG S G PGP G K L P P A G
Sbjct: 2362 PGPKGFKGDPGVGVPGSPG-----PPGP--------PGVKGDLGL---PGLPGAPGVVGF 2405
Query: 200 PTHDSDSADESSDLPLMKVGICRNEGSQAKPG 231
P + P + G+ G + PG
Sbjct: 2406 PGQTGPRGEMGQPGPSGERGLAGPPGREGIPG 2437
>gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo
sapiens]
Length = 735
Score = 50.1 bits (118), Expect = 5e-06
Identities = 64/239 (26%), Positives = 85/239 (35%), Gaps = 25/239 (10%)
Query: 270 AERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGAAAAGALPQGL---SRRKMAGGKKSLG 326
A+RP E PQ S+A + P S + A GA Q L SRR + GG K
Sbjct: 33 AQRPEPSPPEPEPQAPEGSQAGAEGPSSPEASRSPARGAYLQSLEPSSRRWVLGGAKP-- 90
Query: 327 GASQLALGRGFPACGERLSAA---------PPEPATFPPFSGVRPQGMSKKPQKPKHSSP 377
A +LG G P GE P PA PP G +P + P+ ++P
Sbjct: 91 -AEDTSLGPGVPGTGEPAGEIWYNPIPEEDPRPPAPEPP--GPQPGSAESEGLAPQGAAP 147
Query: 378 GKKPAGRKTRESQAAAREDNDPNRDEVP--RAQLPTHRPGLPRLSVRRGEFSSSDPNIRA 435
P +S AR + + ++P R +L P R R S
Sbjct: 148 ASPPTKASRTKSPGPARRLSIKMK-KLPELRRRLSLRGPRAGRERERAAPAGSVISRYHL 206
Query: 436 PQLPGTSEPSAYSPGGLVPRRHAPSGNQQP--PVHPPRP---ERQQQPPGAQGCPRCIW 489
G P+A G PR S P P PP P + P A+ P +W
Sbjct: 207 DSSVGGPGPAAGPGGTRSPRAGYLSDGDSPERPAGPPSPTSFRPYEVGPAARAPPAALW 265
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 50.1 bits (118), Expect = 5e-06
Identities = 64/302 (21%), Positives = 109/302 (36%), Gaps = 27/302 (8%)
Query: 173 NPERGSKSRWSLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGS 232
+P+ K+ S P R P+ + S+ S P MK G+ R +++ GS
Sbjct: 1387 SPDAVEKAGMSSNQSISSPVLDAVPRTPSRERSSSASS---PEMKDGLPRTPSRRSRSGS 1443
Query: 233 PKKRADTSRQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWG 292
D S S H P + RG + P L +P+ + +S +
Sbjct: 1444 SPGLRDGSGTPSRHSLSGSSPGMKDIPRTPSRGRSECDSSPEPKALPQTPRPRSRSPSSP 1503
Query: 293 KVE---VRPSCSGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPP 349
++ + P + + ++ Q R G + G + +L + + SA+P
Sbjct: 1504 ELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELDV---------KPSASPQ 1554
Query: 350 EPATFPPFSGVRPQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQL 409
E + S + ++ P + + S K+R S +R + P + PRA
Sbjct: 1555 ERSESD--SSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKDKPRAA- 1611
Query: 410 PTHRPGLPRLSVRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHP 469
PR + G SS +P AP+ S S G P S + P HP
Sbjct: 1612 -------PR--AQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHP 1662
Query: 470 PR 471
P+
Sbjct: 1663 PK 1664
Score = 42.7 bits (99), Expect = 8e-04
Identities = 80/344 (23%), Positives = 122/344 (35%), Gaps = 39/344 (11%)
Query: 120 PEGAAAEGSAENWADAEVGPSGRDVLGHSPGKW---QQASAGRLHL-CGPGPVRAWKNPE 175
P + GS+ D PS + G SPG + S GR P P + P
Sbjct: 1435 PSRRSRSGSSPGLRDGSGTPSRHSLSGSSPGMKDIPRTPSRGRSECDSSPEPKALPQTPR 1494
Query: 176 RGSKSRWSLRVDPQQPSAKGPTRLPTHDSDSADESSD---LPLMKVGICRNEGS----QA 228
S+S P P P + ++ S D + +G GS
Sbjct: 1495 PRSRS-------PSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELDV 1547
Query: 229 KP-GSPKKRADTSRQASFHCKESYLPVPGRFLT-SAPRGLTPVAERPAVGELEDSPQKKM 286
KP SP++R+++ K + P+ R + S+P + P SP+ K
Sbjct: 1548 KPSASPQERSESDSSPDSKAK-TRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKD 1606
Query: 287 QSRAWGKVEVRPSCSGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSA 346
+ RA + + S A A P+ L RR +G GRG G +
Sbjct: 1607 KPRAAPRAQSGSDSSPEPKAPA-PRALPRRSRSGSSSK---------GRGPSPEGSSSTE 1656
Query: 347 APPEPATFPPFSGVRPQGMSKKPQ-KPKHSSPGKKPAGRK----TRESQAAAREDNDPNR 401
+ PE PP S +G P+ K K +P ++ + R TR+++ + R + +
Sbjct: 1657 SSPE---HPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSS 1713
Query: 402 DEVPRAQLPTHRPGLPRLSVRRGEFSSSDPNIRAPQLPGTSEPS 445
E P HR S E S S R+ P T S
Sbjct: 1714 PETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTS 1757
Score = 36.6 bits (83), Expect = 0.056
Identities = 70/311 (22%), Positives = 105/311 (33%), Gaps = 39/311 (12%)
Query: 187 DPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTSRQASFH 246
+ +QP+ + P S+ S K ++ G +++ SP++ S + H
Sbjct: 159 EAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKH 218
Query: 247 CKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGAA-A 305
ES R TP ++R + +D +K+ +S R S +A +
Sbjct: 219 RSES------ESKKRKHRSPTPKSKRKS----KDKKRKRSRSTTPAPKSRRAHRSTSADS 268
Query: 306 AGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPP--EPATFPPFSGVRPQ 363
A + SR + A K + LA PA G R P EP T P+
Sbjct: 269 ASSSDTSRSRSRSAAAKTH---TTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPE 325
Query: 364 GMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRD------------------EVP 405
+K+P P K TR S + R P P
Sbjct: 326 TATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTP 385
Query: 406 RAQLPTHRPGLPRLSVRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQP 465
+Q P + P S R P + PQ +SE S SP RHA S + P
Sbjct: 386 LSQEPVNPPS--EASPTRDRSPPKSPE-KLPQ-SSSSESSPPSPQPTKVSRHASSSPESP 441
Query: 466 -PVHPPRPERQ 475
P P R+
Sbjct: 442 KPAPAPGSHRE 452
Score = 36.2 bits (82), Expect = 0.073
Identities = 70/326 (21%), Positives = 119/326 (36%), Gaps = 76/326 (23%)
Query: 167 PVRAWKNPERGSKSRWSLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGS 226
P R ++ R + +R S R + P+ +G +R T S L++ G +
Sbjct: 663 PARRGRSRSR-TPARRSGRSRSRTPARRGRSRSRT---PRRGRSRSRSLVRRGRSHSRTP 718
Query: 227 Q--AKPGSPKKRADTSRQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQK 284
Q + GS +R + SR + + + P + S+ R + SP+
Sbjct: 719 QRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSL-----------SSPRS 767
Query: 285 KMQSRAWGKVEVRPSCSGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERL 344
K +SR + +R S SG++ ++ ++S G+SQ P R
Sbjct: 768 KAKSR----LSLRRSLSGSSPCP------KQKSQTPPRRSRSGSSQPKAKSRTPPRRSRS 817
Query: 345 SAAPPEPATFPPFSGVRPQGMSKKPQKPKHSSPGKKP---AGRKTRESQAAAREDNDPNR 401
S++PP P+ SK P + HSS P +G R+ + + N+ +
Sbjct: 818 SSSPP------------PKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSPQANE--Q 863
Query: 402 DEVPRAQLPTHRPGLPRLSVRRGEFSSS-DPNIRAPQLPGTSEPSAYSPGGLVPRRHAPS 460
P+ RR F SS DP +++ P RH+ S
Sbjct: 864 SVTPQ---------------RRSCFESSPDPELKSR----------------TPSRHSCS 892
Query: 461 GNQQPPVHPPRPERQQQPPGAQGCPR 486
G+ P V P RQ + P+
Sbjct: 893 GSSPPRVKSSTPPRQSPSRSSSPQPK 918
Score = 35.4 bits (80), Expect = 0.13
Identities = 100/476 (21%), Positives = 154/476 (32%), Gaps = 58/476 (12%)
Query: 20 KKAGSRTASPGAPGAHSHGLDLGVPGSGDGKSESGFTDPEGFSFESESELIEQGRVVLWG 79
K+ SR+ +P +H S S S S S + L G
Sbjct: 244 KRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRS----------RSRSAAAKTHTTALAG 293
Query: 80 REGRPGTPVDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEGAAAEGSAENWADAEVGP 139
R P + +GD P + S Q PE A + S+ + D +
Sbjct: 294 RSPSPASGRRGEGDA----------PFSEPGTTSTQRPSSPETATKQPSSP-YEDKDKDK 342
Query: 140 SGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNPERGSKSRWSLRVDP--QQPSAKGPT 197
+ SP +++S G P P+ A ER S L P Q+P
Sbjct: 343 KEKSATRPSPSP-ERSSTGP-EPPAPTPLLA----ERHGGSPQPLATTPLSQEPVNPPSE 396
Query: 198 RLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTSRQASFHCKESYLPVPG- 256
PT D LP ++ S++ P SP+ + +S P PG
Sbjct: 397 ASPTRDRSPPKSPEKLP-------QSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGS 449
Query: 257 -RFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGAAAAGALP--QGL 313
R ++S+P R D SR G+ + + P +G
Sbjct: 450 HREISSSPTSKNRSHGRAK----RDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGH 505
Query: 314 SRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGVRPQGMSKKPQKPK 373
SR + ++S S GR S +P P + + +G S+ ++ +
Sbjct: 506 SRSRSPQWRRS---RSAQRWGRSRSPQRRGRSRSPQRPG-WSRSRNTQRRGRSRSARRGR 561
Query: 374 HSSPGKKPAGRKTRESQAAAREDNDPNRDEV---PRAQLPTHRPGLPRLSVRRGEFSSSD 430
S + PA R S+ AR +R R++ PT R R RRG S
Sbjct: 562 SHS--RSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRT 619
Query: 431 PNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQQPPGAQGCPR 486
P R + T P P R + + P R + + P +G R
Sbjct: 620 PARRRSR---TRSPVRRRSRSRSPARRSGRSRSRTPAR--RGRSRSRTPARRGRSR 670
Score = 32.0 bits (71), Expect = 1.4
Identities = 70/292 (23%), Positives = 103/292 (35%), Gaps = 64/292 (21%)
Query: 189 QQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTSRQASFHCK 248
QQPSA + P + S+ SS + S + S + +S +S +
Sbjct: 2516 QQPSALAALQ-PAKERRSSSSSSS----------SSSSSSSSSSSSSSSSSSGSSSSDSE 2564
Query: 249 ESYLPVPGRFLTSAPRGLTPVAERPAVGE---LEDSPQKKMQSRAWGKVEVRPSCSGAAA 305
S LPV TP A + AV E E +P K+ + R S S +++
Sbjct: 2565 GSSLPVQPEVALKRVPSPTP-APKEAVREGRPPEPTPAKRKR---------RSSSSSSSS 2614
Query: 306 AGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGVRPQGM 365
+ + S + S +S + S++ P PA PQ +
Sbjct: 2615 SSSSSSSSSSSSSSSSSSSSSSSS---------SSSSSSSSSSPSPAK------PGPQAL 2659
Query: 366 SKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPT-HRPGLPRLSVRRG 424
PK +SP K P G + S R+ D RD + P R P+ S R
Sbjct: 2660 ------PKPASPKKPPPGERRSRS---PRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQ 2710
Query: 425 EFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQ 476
+ SSS+ R Q + PS RR PS PRP R +
Sbjct: 2711 QSSSSERGSRRGQRGDSRSPSHKR------RRETPS---------PRPMRHR 2747
Score = 31.2 bits (69), Expect = 2.4
Identities = 84/382 (21%), Positives = 135/382 (35%), Gaps = 52/382 (13%)
Query: 122 GAAAEGSAENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNPERGSKSR 181
G + EGS+ + E P R S + + R P + +PE K+R
Sbjct: 1646 GPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTP---PRRRSSRSSPELTRKAR 1702
Query: 182 WSLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTSR 241
S R S + +R P S SS P K R S + P + TSR
Sbjct: 1703 LSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSP----RTKTTSR 1758
Query: 242 QASFHCKESYLPVPGRFLTSAPRGL------------TPVAERPAVGELEDSPQKKMQSR 289
+ GR + PRGL R G + + +++ +SR
Sbjct: 1759 R-------------GRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSR 1805
Query: 290 AWGKV-EVRPSCSGAAAAGALPQGLSR---RKMAGGKKSLGGASQLALGRGFPACGERLS 345
+ +V R SG + Q SR R+ G ++ + + + R PA +R S
Sbjct: 1806 SRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKR-S 1864
Query: 346 AAPPEPATFPPFSGVRPQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVP 405
+ PAT S R +S++ + + S ++ + +T ++ +R P
Sbjct: 1865 RSRASPATHRR-SRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRS 1923
Query: 406 RAQLP--THRPGLPRLSVRRGEFSSSDPNI-------RAPQLPGTSEPSAYSPGGLVPRR 456
R++ P T R R R S P + R P + S SP + RR
Sbjct: 1924 RSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSP---ITRR 1980
Query: 457 HAPSGNQQPPVHPPRPERQQQP 478
S ++ PV R + P
Sbjct: 1981 R--SRSRTSPVTRRRSRSRTSP 2000
Score = 30.8 bits (68), Expect = 3.1
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Query: 313 LSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGVRPQGMSKKPQKP 372
L+ +K + + G + G F A P P P+S VR S+ P
Sbjct: 127 LNEKKNERLRAAFGISDSYVDGSSFDPQRRAREAKQPAPEPPKPYSLVRESSSSRSPTPK 186
Query: 373 KHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPT----HRPGLPR 418
+ KK GR++ ES + RE ++ + R++ + HR P+
Sbjct: 187 QKKKKKKKDRGRRS-ESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPK 235
>gi|20070376 solute carrier family 38, member 10 isoform b [Homo
sapiens]
Length = 780
Score = 49.7 bits (117), Expect = 6e-06
Identities = 88/361 (24%), Positives = 130/361 (36%), Gaps = 45/361 (12%)
Query: 135 AEVGPSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNPERGSKSRWSLRVDPQQPSAK 194
AE P GR LG + G + +A L PV A R R + +Q K
Sbjct: 406 AEEAPGGR--LGEAEGLMKVEAA---RLSAQDPVVAVAEDGREKPKLPKEREELEQAQIK 460
Query: 195 GPTRLP-THDSDSADESSDL--PLMKVGICRNEGSQAKPGSPKKRADTSRQASFHCKESY 251
GP +P D A E + L P + + E + +P P + E
Sbjct: 461 GPVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREVPEEN 520
Query: 252 LPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGAAA-AGALP 310
P P R G P + L DS ++K + G+V RP + A AG LP
Sbjct: 521 KP-PSRHAG----GKAPGVQGQMAPPLPDSEREKQEPEQ-GEVGKRPGQAQALEEAGDLP 574
Query: 311 QGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGVRPQGMSKKPQ 370
+ + A G+ ++ A + P + P RPQ + + Q
Sbjct: 575 EDPQKVPEADGQPAVQPAKE--------------DLGPGDRGLHP-----RPQAVLSEQQ 615
Query: 371 KPKHSSPGKK-----PAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVRRGE 425
G+K P G ++ A + + + +P A+ P PGLP + +
Sbjct: 616 NGLAVGGGEKAKGGPPPGNAAGDTGQPAEDSDHGGKPPLP-AEKPAPGPGLPPEPREQRD 674
Query: 426 FSSSDPNIRAPQLPGTS---EPSAYSPGGLVPRRHAPSGNQQPPV-HPPRPERQQQPPGA 481
+ N A QL G + +P A PG P P G+ Q + P RP QPP
Sbjct: 675 VERAGGNQAASQLEGKASALQPPASGPGSGSPLPQ-PWGDAQVILGSPARPPFSFQPPAE 733
Query: 482 Q 482
Q
Sbjct: 734 Q 734
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 49.7 bits (117), Expect = 6e-06
Identities = 48/185 (25%), Positives = 65/185 (35%), Gaps = 14/185 (7%)
Query: 310 PQGLSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGVRPQGMSKKP 369
P+G R+ GG + +G P G S PP P P G PQG ++
Sbjct: 36 PEG---RRPQGGNQPQRPPPPPGKPQGPPPQGGNQSQGPPPPPGKP--EGRPPQGGNQSQ 90
Query: 370 QKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVRRGEFSSS 429
P H ++P + +SQ P R P+ +HRP P R
Sbjct: 91 GPPPHPGKPERPPPQGGNQSQGTPPPPGKPERPP-PQGGNQSHRPPPPPGKPERPPPQGG 149
Query: 430 DPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVH--------PPRPERQQQPPGA 481
+ + P PG E G +P G Q P PP P + Q PP A
Sbjct: 150 NQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPA 209
Query: 482 QGCPR 486
G P+
Sbjct: 210 GGNPQ 214
Score = 43.9 bits (102), Expect = 4e-04
Identities = 47/175 (26%), Positives = 59/175 (33%), Gaps = 16/175 (9%)
Query: 320 GGKKSLGGASQLALGRGFPACGERLSAAPP----EPATFPPFSGVRPQGMSKKPQKPKHS 375
GG +S G G P G S PP +P PP G + QG P KP+
Sbjct: 64 GGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERP 123
Query: 376 SPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPR----LSVRRGEFSSSDP 431
P G ++ + P ++Q P PG P + + S P
Sbjct: 124 PP---QGGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPP 180
Query: 432 NIRAPQLPGTSE---PSAYSPGGLVPRRHAPSGNQQPPVHPPRPERQQQPPGAQG 483
PQ P E P P G GN Q P PP + Q PP QG
Sbjct: 181 G--KPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPPAGKPQGPPPPPQG 233
Score = 43.9 bits (102), Expect = 4e-04
Identities = 55/200 (27%), Positives = 72/200 (36%), Gaps = 41/200 (20%)
Query: 292 GKVEVRPSCSGAAAAGALPQG--LSRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPP 349
GK E RP G + G P R GG +S G P G S PP
Sbjct: 76 GKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPP 135
Query: 350 ----EPATFPPFSGVRPQGMSKKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVP 405
+P PP G + QG P KP+ P + G K+R +++ + P + E
Sbjct: 136 PPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQE---GNKSRSARSPPGKPQGPPQQEGN 192
Query: 406 RAQLPTHRPGLPRLSVRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQP 465
+ Q P PG P+ G N + PQ P P+G Q
Sbjct: 193 KPQGPPP-PGKPQGPPPAGG------NPQQPQAP-------------------PAGKPQG 226
Query: 466 PV------HPPRPERQQQPP 479
P PPRP + QQPP
Sbjct: 227 PPPPPQGGRPPRPAQGQQPP 246
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 49.3 bits (116), Expect = 8e-06
Identities = 79/340 (23%), Positives = 120/340 (35%), Gaps = 51/340 (15%)
Query: 164 GPG--PVRAWKNPERGSKSRWSLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGIC 221
GPG P++ P+ S S+ ++ Q P P + PT + + + LPL +
Sbjct: 224 GPGRDPLQQDGTPKSIS-SQQPEKIKSQPPGTGKPIQGPTQTPQT--DHAKLPLQR---- 276
Query: 222 RNEGSQAKPGSPKKRADTSRQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDS 281
++P + K+AD R S + LP P + P P A++P + +
Sbjct: 277 ----DASRPQT--KQADIVRGESV---KPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPG 327
Query: 282 PQKKMQSRAWGKVEVRPSCSGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACG 341
P K ++ G + G P G ++ + LG A A G
Sbjct: 328 PAKP-PAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPA----QPLGPAKPPAQQTG----S 378
Query: 342 ERLSAAPPEPATF--PPFSGVRPQ---GMSKKP-----------QKPKHSSPGKKPAGRK 385
E+ S+ P P PP G P G +K P Q+P SP K P K
Sbjct: 379 EKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTK 438
Query: 386 TRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVRRGEFSSSDPNIRAPQLPGTSEPS 445
T Q P ++P Q + + + P PQ PG ++P
Sbjct: 439 TPVQQ--------PGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPP 490
Query: 446 AYSPGGLVPRRHAPSGNQQPPVHPPRPERQQQPPGAQGCP 485
PG P P + PP P + Q PG+ P
Sbjct: 491 PQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPP 530
Score = 30.8 bits (68), Expect = 3.1
Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 27/141 (19%)
Query: 349 PEPATFPPFSGVRPQGMSKKPQKPKHSSP-GKKPAGRKTRESQAAAREDNDPNRDEVPRA 407
P PA PP +P PQ+P + P ++P K Q + P+ +
Sbjct: 474 PGPAKPPP---QQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAK---PSPQQPGST 527
Query: 408 QLPTHRPGLPRLSVRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPV 467
+ P+ +PG + S Q P ++PSA P SG P+
Sbjct: 528 KPPSQQPGSAKPSA---------------QQPSPAKPSAQQ--STKPVSQTGSGK---PL 567
Query: 468 HPPRPERQQQPPGAQGCPRCI 488
PP + P +QG P+ I
Sbjct: 568 QPPTVSPSAKQPPSQGLPKTI 588
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 49.3 bits (116), Expect = 8e-06
Identities = 79/340 (23%), Positives = 120/340 (35%), Gaps = 51/340 (15%)
Query: 164 GPG--PVRAWKNPERGSKSRWSLRVDPQQPSAKGPTRLPTHDSDSADESSDLPLMKVGIC 221
GPG P++ P+ S S+ ++ Q P P + PT + + + LPL +
Sbjct: 224 GPGRDPLQQDGTPKSIS-SQQPEKIKSQPPGTGKPIQGPTQTPQT--DHAKLPLQR---- 276
Query: 222 RNEGSQAKPGSPKKRADTSRQASFHCKESYLPVPGRFLTSAPRGLTPVAERPAVGELEDS 281
++P + K+AD R S + LP P + P P A++P + +
Sbjct: 277 ----DASRPQT--KQADIVRGESV---KPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPG 327
Query: 282 PQKKMQSRAWGKVEVRPSCSGAAAAGALPQGLSRRKMAGGKKSLGGASQLALGRGFPACG 341
P K ++ G + G P G ++ + LG A A G
Sbjct: 328 PAKP-PAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPA----QPLGPAKPPAQQTG----S 378
Query: 342 ERLSAAPPEPATF--PPFSGVRPQ---GMSKKP-----------QKPKHSSPGKKPAGRK 385
E+ S+ P P PP G P G +K P Q+P SP K P K
Sbjct: 379 EKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTK 438
Query: 386 TRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVRRGEFSSSDPNIRAPQLPGTSEPS 445
T Q P ++P Q + + + P PQ PG ++P
Sbjct: 439 TPVQQ--------PGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPP 490
Query: 446 AYSPGGLVPRRHAPSGNQQPPVHPPRPERQQQPPGAQGCP 485
PG P P + PP P + Q PG+ P
Sbjct: 491 PQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPP 530
Score = 30.8 bits (68), Expect = 3.1
Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 27/141 (19%)
Query: 349 PEPATFPPFSGVRPQGMSKKPQKPKHSSP-GKKPAGRKTRESQAAAREDNDPNRDEVPRA 407
P PA PP +P PQ+P + P ++P K Q + P+ +
Sbjct: 474 PGPAKPPP---QQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAK---PSPQQPGST 527
Query: 408 QLPTHRPGLPRLSVRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPV 467
+ P+ +PG + S Q P ++PSA P SG P+
Sbjct: 528 KPPSQQPGSAKPSA---------------QQPSPAKPSAQQ--STKPVSQTGSGK---PL 567
Query: 468 HPPRPERQQQPPGAQGCPRCI 488
PP + P +QG P+ I
Sbjct: 568 QPPTVSPSAKQPPSQGLPKTI 588
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 48.1 bits (113), Expect = 2e-05
Identities = 97/406 (23%), Positives = 135/406 (33%), Gaps = 43/406 (10%)
Query: 80 REGRPGTP-VDDQGDVVDYSFYLADEPAAIVPPPSVQGHPFPEGAAAEGSAENWADAEVG 138
R PG P V Q + D P A PPP + P A E WA G
Sbjct: 12 RTPAPGCPEVAPQPEGTDAPGPAVCSPTARAPPPILPAPQRPPTRAREWEGAAWAAGATG 71
Query: 139 PS-------GRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKN--PERGSKSRWSLRVDPQ 189
G LG P +++AS G PG RA + E G + R + +
Sbjct: 72 VGAALLALPGSRRLGRVPLTFREASPGP----APGAPRARGSCGREPGPRRRRAPSSAGK 127
Query: 190 QPSAKGPTRLPTHDSDSADESSDLPLMKVGICRNEGSQAKP--GSPKKRADTSRQASFHC 247
+P+A P S + + R+ GS +P G R R HC
Sbjct: 128 RPAAAARAAPPRQRS-----------LARCLPRSVGSCVRPSVGPSLPRRHCRRHCRCHC 176
Query: 248 KESYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGAAAAG 307
+ LP P P P G S R + E P+ G
Sbjct: 177 RRRPLPKPPPLQPRLGSASPPRLAAPLAGSRAPS-LSPFPRRCRRRAERSPAGHGL---- 231
Query: 308 ALPQGLSR-RKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGVRPQGMS 366
LP+ LSR ++ G ++ GG + GR C +PP PA P G + +
Sbjct: 232 PLPRSLSRGGEVVGARRRRGGEERRVRGRR-QGCA---LGSPPIPAG-PAAPGRAGERRA 286
Query: 367 KKPQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVRRGEF 426
+ + + PG P E R T + G P ++
Sbjct: 287 ARQWRKRGGGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPYRAIFAAGP 346
Query: 427 SSSDPNIRAPQLPG--TSEPSAYSPGGLVPRR-HAPSGNQQPPVHP 469
S P+ A ++PG T+ Y P L RR APS + P P
Sbjct: 347 RLSAPSAEAEEVPGGHTASNPTYEP--LSSRRTKAPSEGRDSPSSP 390
>gi|239742467 PREDICTED: double homeobox, 4-like [Homo sapiens]
Length = 483
Score = 48.1 bits (113), Expect = 2e-05
Identities = 97/413 (23%), Positives = 134/413 (32%), Gaps = 76/413 (18%)
Query: 105 PAAIVPPPSVQGHPFPEGAAAEGSAENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLC- 163
PA++ P PSV+ P A +++ AE GR W + + L C
Sbjct: 44 PASLCPRPSVKFRPGLTAMALPTPSDSTLPAEARGRGR----RRRLVWTPSQSEALRACF 99
Query: 164 --GPGP------------------VRAWKNPERGSKSRWSLRVDPQQPSAKGPTRLPTHD 203
P P V+ W ER + R R P +GP
Sbjct: 100 ERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQHRRESRPWPGRRGPPEGRRKR 159
Query: 204 SDSADESSDLPLMKV------GICRNEGSQAKPGSPKKRADTSRQASFHCKESYLPVPGR 257
+ + L L GI E + G P+ R Q F + + P G
Sbjct: 160 TAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPESRI----QIWFQNRRARHPGQGG 215
Query: 258 FLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGAAAAGALPQGLSRRK 317
+ GL A P G S + AWG P A GALPQG
Sbjct: 216 RAPAQAGGLCSAA--PGGGHPAPSWVAFAHTGAWGTGLPAPHVP--CAPGALPQG----- 266
Query: 318 MAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGVRPQGMSKKPQKPKHSS- 376
A ++ A L + PA E +S P F + P G PQ P+
Sbjct: 267 -AFVSQAARAAPALQPSQAAPA--EGVSQPAPARGDFAYAAPAPPDGALSHPQAPRWPPH 323
Query: 377 PGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVRRGEFSSSDPNIRAP 436
PGK +RED DP RD +P +PG + + P +
Sbjct: 324 PGK-------------SREDRDPQRDGLP-GPCAVAQPGP----------AQAGPQGQGV 359
Query: 437 QLPGTSEPSAYSPGGLVPR----RHAPSGNQQPPVHPPRPERQQQPPGAQGCP 485
P TS+ S + G P+ P + PP P P+ + QG P
Sbjct: 360 LAPPTSQGSPWWGWGRGPQVAGAAWEPQAGEAPPPQPAPPDASARQGQMQGIP 412
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 47.4 bits (111), Expect = 3e-05
Identities = 93/385 (24%), Positives = 127/385 (32%), Gaps = 88/385 (22%)
Query: 139 PSGRDVLGHSPGKWQQASAGRLHLCGPGPVRAWKNPERGSKSRWSLRVDPQQPSAKGPTR 198
P+ R G + + A G+ L GPG +P G L +DP+ P
Sbjct: 2068 PTRRWSPGQAESPPRSAPPGKWALAGPG------SPSAGEHGP-GLGLDPRVLFPPAP-- 2118
Query: 199 LPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTSRQASFH------CKE--- 249
LP + E+ P K R+ P P S FH +E
Sbjct: 2119 LPHKLLSRSPETCASPWQKAE-SRSPSCSPGPAHPLSSRPFSALHDFHGHILARTEENIF 2177
Query: 250 SYLPVPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGAAAAGAL 309
S+LP+ + LT AP L P+ V Q+R + P + A +G
Sbjct: 2178 SHLPLHSQHLTRAPCPLIPIGGIQMV-----------QARPGAHPTLLPGPTAAWVSG-- 2224
Query: 310 PQGLSRRKMAGGKKSLGGASQLA-LGRGFPACGERLSAAPPEPATFPPFSGVRPQGMSKK 368
+GG L GA + GR P S +P + S G K
Sbjct: 2225 --------FSGGGSDLTGAREAQERGRWSPTESSSASVSPVAKVSKFTLSSELEGGDYPK 2276
Query: 369 PQKPKHSSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRP-----GLPRLSVRR 423
++ PG+ P D P+ P PTH P LPR R
Sbjct: 2277 ERERTGGGPGRPP--------------DWTPHGTGAPAEPTPTHSPCTPPDTLPRPPQGR 2322
Query: 424 GEFSSSDPNIRAPQLPGTSEPSAYSP-------GGLV----------------PRRH--- 457
S P + +P+ P EPSA P G L PR
Sbjct: 2323 RAAQSWSPRLESPRAPTNPEPSATPPLDRSSSVGCLAEASARFPARTRNLSGEPRTRQDS 2382
Query: 458 -APSGNQQPPVHPPRPERQQQPPGA 481
PSG+ +P HP +PE + PP A
Sbjct: 2383 PKPSGSGEPRAHPHQPE-DRVPPNA 2406
>gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 47.0 bits (110), Expect = 4e-05
Identities = 97/413 (23%), Positives = 133/413 (32%), Gaps = 76/413 (18%)
Query: 105 PAAIVPPPSVQGHPFPEGAAAEGSAENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLC- 163
PA++ P PSV+ P A +++ AE GR W + + L C
Sbjct: 44 PASLCPRPSVKLRPGLTAMALPTPSDSTLPAEARGRGR----RRRLVWTPSQSEALRACF 99
Query: 164 --GPGP------------------VRAWKNPERGSKSRWSLRVDPQQPSAKGPTRLPTHD 203
P P V+ W ER + R R P +GP
Sbjct: 100 ERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQHRRESRPWPGRRGPPEGRRKR 159
Query: 204 SDSADESSDLPLMKV------GICRNEGSQAKPGSPKKRADTSRQASFHCKESYLPVPGR 257
+ + L L GI E + G P+ R Q F + + P G
Sbjct: 160 TAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPESRI----QIWFQNRRARHPGQGG 215
Query: 258 FLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGAAAAGALPQGLSRRK 317
+ GL A P G S + AWG P A GALPQG
Sbjct: 216 RAPAQAGGLCSAA--PGGGHPAPSWVAFAHTGAWGTGLPAPHVP--CAPGALPQG----- 266
Query: 318 MAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGVRPQGMSKKPQKPKHSS- 376
A ++ A L + PA E +S P F + P G PQ P+
Sbjct: 267 -AFVSQAARAAPALQPSQAAPA--EGISQPAPARGDFAYAAPAPPDGALSHPQAPRWPPH 323
Query: 377 PGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVRRGEFSSSDPNIRAP 436
PGK +RED DP RD +P +PG + + P +
Sbjct: 324 PGK-------------SREDRDPQRDGLP-GPCAVAQPGP----------AQAGPQGQGV 359
Query: 437 QLPGTSEPSAYSPGGLVPR----RHAPSGNQQPPVHPPRPERQQQPPGAQGCP 485
P TS+ S + G P+ P PP P P+ + QG P
Sbjct: 360 LAPPTSQGSPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASARQGQMQGIP 412
>gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 47.0 bits (110), Expect = 4e-05
Identities = 97/413 (23%), Positives = 133/413 (32%), Gaps = 76/413 (18%)
Query: 105 PAAIVPPPSVQGHPFPEGAAAEGSAENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLC- 163
PA++ P PSV+ P A +++ AE GR W + + L C
Sbjct: 44 PASLCPRPSVKLRPGLTAMALPTPSDSTLPAEARGRGR----RRRLVWTPSQSEALRACF 99
Query: 164 --GPGP------------------VRAWKNPERGSKSRWSLRVDPQQPSAKGPTRLPTHD 203
P P V+ W ER + R R P +GP
Sbjct: 100 ERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQHRRESRPWPGRRGPPEGRRKR 159
Query: 204 SDSADESSDLPLMKV------GICRNEGSQAKPGSPKKRADTSRQASFHCKESYLPVPGR 257
+ + L L GI E + G P+ R Q F + + P G
Sbjct: 160 TAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPESRI----QIWFQNRRARHPGQGG 215
Query: 258 FLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGAAAAGALPQGLSRRK 317
+ GL A P G S + AWG P A GALPQG
Sbjct: 216 RAPAQAGGLCSAA--PGGGHPAPSWVAFAHTGAWGTGLPAPHVP--CAPGALPQG----- 266
Query: 318 MAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGVRPQGMSKKPQKPKHSS- 376
A ++ A L + PA E +S P F + P G PQ P+
Sbjct: 267 -AFVSQAARAAPALQPSQAAPA--EGISQPAPARGDFAYAAPAPPDGALSHPQAPRWPPH 323
Query: 377 PGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVRRGEFSSSDPNIRAP 436
PGK +RED DP RD +P +PG + + P +
Sbjct: 324 PGK-------------SREDRDPQRDGLP-GPCAVAQPGP----------AQAGPQGQGV 359
Query: 437 QLPGTSEPSAYSPGGLVPR----RHAPSGNQQPPVHPPRPERQQQPPGAQGCP 485
P TS+ S + G P+ P PP P P+ + QG P
Sbjct: 360 LAPPTSQGSPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASARQGQMQGIP 412
>gi|239744244 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 47.0 bits (110), Expect = 4e-05
Identities = 100/417 (23%), Positives = 134/417 (32%), Gaps = 84/417 (20%)
Query: 105 PAAIVPPPSVQGHPFPEGAAAEGSAENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLC- 163
PA++ P PSV+ P A +++ AE GR W + + L C
Sbjct: 44 PASLCPRPSVKLRPGLTAMALPTPSDSTLPAEARGRGR----RRRLVWTPSQSEALRACF 99
Query: 164 --GPGP------------------VRAWKNPERGSKSRWSLRVDPQQPSAKGP------- 196
P P V+ W ER + R R P +GP
Sbjct: 100 ERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQHRRESRPWPGRRGPPEGRRKR 159
Query: 197 ---TRLPTHDSDSADESSDLPLMKVGICRNEGSQAKPGSPKKRADTSRQASFHCKESYLP 253
T T A E P GI E + G P+ R Q F + + P
Sbjct: 160 TAVTGFQTALLLRAFEKDRFP----GIAAREELARETGLPESRI----QIWFQNRRARHP 211
Query: 254 VPGRFLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGAAAAGALPQGL 313
G + GL A P G S + AWG P A GALPQG
Sbjct: 212 GQGGRAPAQAGGLCSAA--PGGGHPAPSWVAFAHTGAWGTGLPAPHVP--CAPGALPQG- 266
Query: 314 SRRKMAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGVRPQGMSKKPQKPK 373
A ++ A L + PA E +S P F + P G PQ P+
Sbjct: 267 -----AFVSQAARAAPALQPSQAAPA--EGISQPAPARGDFAYAAPAPPDGALSHPQAPR 319
Query: 374 HSS-PGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVRRGEFSSSDPN 432
PGK +RED DP RD +P +PG + + P
Sbjct: 320 WPPHPGK-------------SREDRDPQRDGLP-GPCAVAQPGP----------AQAGPQ 355
Query: 433 IRAPQLPGTSEPSAYSPGGLVPR----RHAPSGNQQPPVHPPRPERQQQPPGAQGCP 485
+ P TS+ S + G P+ P PP P P+ + QG P
Sbjct: 356 GQGVLAPPTSQGSPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASARQGQMQGIP 412
>gi|239744242 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 47.0 bits (110), Expect = 4e-05
Identities = 97/413 (23%), Positives = 133/413 (32%), Gaps = 76/413 (18%)
Query: 105 PAAIVPPPSVQGHPFPEGAAAEGSAENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLC- 163
PA++ P PSV+ P A +++ AE GR W + + L C
Sbjct: 44 PASLCPRPSVKLRPGLTAMALPTPSDSTLPAEARGRGR----RRRLVWTPSQSEALRACF 99
Query: 164 --GPGP------------------VRAWKNPERGSKSRWSLRVDPQQPSAKGPTRLPTHD 203
P P V+ W ER + R R P +GP
Sbjct: 100 ERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQHRRESRPWPGRRGPPEGRRKR 159
Query: 204 SDSADESSDLPLMKV------GICRNEGSQAKPGSPKKRADTSRQASFHCKESYLPVPGR 257
+ + L L GI E + G P+ R Q F + + P G
Sbjct: 160 TAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPESRI----QIWFQNRRARHPGQGG 215
Query: 258 FLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGAAAAGALPQGLSRRK 317
+ GL A P G S + AWG P A GALPQG
Sbjct: 216 RAPAQAGGLCSAA--PGGGHPAPSWVAFAHTGAWGTGLPAPHVP--CAPGALPQG----- 266
Query: 318 MAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGVRPQGMSKKPQKPKHSS- 376
A ++ A L + PA E +S P F + P G PQ P+
Sbjct: 267 -AFVSQAARAAPALQPSQAAPA--EGISQPAPARGDFAYAAPAPPDGALSHPQAPRWPPH 323
Query: 377 PGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVRRGEFSSSDPNIRAP 436
PGK +RED DP RD +P +PG + + P +
Sbjct: 324 PGK-------------SREDRDPQRDGLP-GPCAVAQPGP----------AQAGPQGQGV 359
Query: 437 QLPGTSEPSAYSPGGLVPR----RHAPSGNQQPPVHPPRPERQQQPPGAQGCP 485
P TS+ S + G P+ P PP P P+ + QG P
Sbjct: 360 LAPPTSQGSPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASARQGQMQGIP 412
>gi|239744240 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 47.0 bits (110), Expect = 4e-05
Identities = 97/413 (23%), Positives = 133/413 (32%), Gaps = 76/413 (18%)
Query: 105 PAAIVPPPSVQGHPFPEGAAAEGSAENWADAEVGPSGRDVLGHSPGKWQQASAGRLHLC- 163
PA++ P PSV+ P A +++ AE GR W + + L C
Sbjct: 44 PASLCPRPSVKLRPGLTAMALPTPSDSTLPAEARGRGR----RRRLVWTPSQSEALRACF 99
Query: 164 --GPGP------------------VRAWKNPERGSKSRWSLRVDPQQPSAKGPTRLPTHD 203
P P V+ W ER + R R P +GP
Sbjct: 100 ERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQHRRESRPWPGRRGPPEGRRKR 159
Query: 204 SDSADESSDLPLMKV------GICRNEGSQAKPGSPKKRADTSRQASFHCKESYLPVPGR 257
+ + L L GI E + G P+ R Q F + + P G
Sbjct: 160 TAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPESRI----QIWFQNRRARHPGQGG 215
Query: 258 FLTSAPRGLTPVAERPAVGELEDSPQKKMQSRAWGKVEVRPSCSGAAAAGALPQGLSRRK 317
+ GL A P G S + AWG P A GALPQG
Sbjct: 216 RAPAQAGGLCSAA--PGGGHPAPSWVAFAHTGAWGTGLPAPHVP--CAPGALPQG----- 266
Query: 318 MAGGKKSLGGASQLALGRGFPACGERLSAAPPEPATFPPFSGVRPQGMSKKPQKPKHSS- 376
A ++ A L + PA E +S P F + P G PQ P+
Sbjct: 267 -AFVSQAARAAPALQPSQAAPA--EGISQPAPARGDFAYAAPAPPDGALSHPQAPRWPPH 323
Query: 377 PGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVRRGEFSSSDPNIRAP 436
PGK +RED DP RD +P +PG + + P +
Sbjct: 324 PGK-------------SREDRDPQRDGLP-GPCAVAQPGP----------AQAGPQGQGV 359
Query: 437 QLPGTSEPSAYSPGGLVPR----RHAPSGNQQPPVHPPRPERQQQPPGAQGCP 485
P TS+ S + G P+ P PP P P+ + QG P
Sbjct: 360 LAPPTSQGSPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASARQGQMQGIP 412
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 47.0 bits (110), Expect = 4e-05
Identities = 57/232 (24%), Positives = 87/232 (37%), Gaps = 43/232 (18%)
Query: 293 KVEVRPSCSGAAAAGALPQGLSRRKMAGGK---KSLGGASQLALGRGFPACG-------- 341
K E P +A G + ++A G+ ++ G+ QL++G+ A G
Sbjct: 494 KKESPPKPKDPVSAAVPAPGRNNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLRR 553
Query: 342 --ERLSAAPPEPATFPP-------FSGV--RPQGMSKKPQKPKHSSPGK---KPAGRKTR 387
++ + APP+P PP SG P +S KP S P + +P G+ +
Sbjct: 554 AVKKPAPAPPKPGNPPPGHPGGQSSSGTSQHPPSLSPKPPTRSPSPPTQHTGQPPGQPSA 613
Query: 388 ESQAAAREDNDPNRDEVPRAQLPTHRPGLPRLSVRRGEFSSSDPNIRAPQLP-------G 440
SQ +A + + Q P H P P+ + + PN + P P G
Sbjct: 614 PSQLSAPRRYSSSLSPI---QAPNHPP--PQPPTQATPLMHTKPNSQGPPNPMALPSEHG 668
Query: 441 TSEPSAYSPGGLVPRRHAPSGNQQPPVHPPR------PERQQQPPGAQGCPR 486
+PS P P P G Q P + P+ PE Q G PR
Sbjct: 669 LEQPSHTPPQTPTPPSTPPLGKQNPSLPAPQTLAGGNPETAQPHAGTLPRPR 720
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.132 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,898,529
Number of Sequences: 37866
Number of extensions: 1783927
Number of successful extensions: 10129
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 746
Number of HSP's that attempted gapping in prelim test: 7719
Number of HSP's gapped (non-prelim): 2573
length of query: 514
length of database: 18,247,518
effective HSP length: 107
effective length of query: 407
effective length of database: 14,195,856
effective search space: 5777713392
effective search space used: 5777713392
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.