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Search of human proteins with 223029449
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223029449 neural proliferation, differentiation and control,
1 [Homo sapiens]
(325 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223029449 neural proliferation, differentiation and control, ... 674 0.0
gi|94536830 DMRT-like family C2 [Homo sapiens] 40 0.003
gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens] 39 0.005
gi|169173182 PREDICTED: hypothetical protein [Homo sapiens] 36 0.053
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 36 0.053
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 36 0.053
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 36 0.053
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c... 35 0.070
gi|27886563 nuclear factor of activated T-cells, cytoplasmic, ca... 35 0.070
gi|164565408 common-site lymphoma/leukemia guanine nucleotide ex... 35 0.070
gi|24497609 nucleoporin 62kDa [Homo sapiens] 35 0.091
gi|24497607 nucleoporin 62kDa [Homo sapiens] 35 0.091
gi|24497605 nucleoporin 62kDa [Homo sapiens] 35 0.091
gi|24497603 nucleoporin 62kDa [Homo sapiens] 35 0.091
gi|116734706 interferon regulatory factor 2 binding protein 2 is... 35 0.091
gi|116734704 interferon regulatory factor 2 binding protein 2 is... 35 0.091
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 35 0.12
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 35 0.12
gi|239754253 PREDICTED: hypothetical protein XP_002345936 [Homo ... 34 0.16
gi|239748791 PREDICTED: hypothetical protein XP_002346804 [Homo ... 34 0.16
gi|239742828 PREDICTED: hypothetical protein XP_002342673 [Homo ... 34 0.16
gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo s... 34 0.16
gi|148727370 immediate early response 5-like [Homo sapiens] 34 0.16
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 34 0.20
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 33 0.26
gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo ... 33 0.26
gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo ... 33 0.26
gi|39930351 dynamin binding protein [Homo sapiens] 33 0.26
gi|45827729 scribble isoform b [Homo sapiens] 33 0.26
gi|50593008 transmembrane BAX inhibitor motif containing 1 [Homo... 33 0.26
>gi|223029449 neural proliferation, differentiation and control, 1
[Homo sapiens]
Length = 325
Score = 674 bits (1738), Expect = 0.0
Identities = 325/325 (100%), Positives = 325/325 (100%)
Query: 1 MATPLPPPSPRHLRLLRLLLSGLVLGAALRGAAAGHPDVAACPGSLDCALKRRARCPPGA 60
MATPLPPPSPRHLRLLRLLLSGLVLGAALRGAAAGHPDVAACPGSLDCALKRRARCPPGA
Sbjct: 1 MATPLPPPSPRHLRLLRLLLSGLVLGAALRGAAAGHPDVAACPGSLDCALKRRARCPPGA 60
Query: 61 HACGPCLQPFQEDQQGLCVPRMRRPPGGGRPQPRLEDEIDFLAQELARKESGHSTPPLPK 120
HACGPCLQPFQEDQQGLCVPRMRRPPGGGRPQPRLEDEIDFLAQELARKESGHSTPPLPK
Sbjct: 61 HACGPCLQPFQEDQQGLCVPRMRRPPGGGRPQPRLEDEIDFLAQELARKESGHSTPPLPK 120
Query: 121 DRQRLPEPATLGFSARGQGLELGLPSTPGTPTPTPHTSLGSPVSSDPVHMSPLEPRGGQG 180
DRQRLPEPATLGFSARGQGLELGLPSTPGTPTPTPHTSLGSPVSSDPVHMSPLEPRGGQG
Sbjct: 121 DRQRLPEPATLGFSARGQGLELGLPSTPGTPTPTPHTSLGSPVSSDPVHMSPLEPRGGQG 180
Query: 181 DGLALVLILAFCVAGAAALSVASLCWCRLQREIRLTQKADYATAKAPGSPAAPRISPGDQ 240
DGLALVLILAFCVAGAAALSVASLCWCRLQREIRLTQKADYATAKAPGSPAAPRISPGDQ
Sbjct: 181 DGLALVLILAFCVAGAAALSVASLCWCRLQREIRLTQKADYATAKAPGSPAAPRISPGDQ 240
Query: 241 RLAQSAEMYHYQHQRQQMLCLERHKEPPKELDTASSDEENEDGDFTVYECPGLAPTGEME 300
RLAQSAEMYHYQHQRQQMLCLERHKEPPKELDTASSDEENEDGDFTVYECPGLAPTGEME
Sbjct: 241 RLAQSAEMYHYQHQRQQMLCLERHKEPPKELDTASSDEENEDGDFTVYECPGLAPTGEME 300
Query: 301 VRNPLFDHAALSAPLPAPSSPPALP 325
VRNPLFDHAALSAPLPAPSSPPALP
Sbjct: 301 VRNPLFDHAALSAPLPAPSSPPALP 325
>gi|94536830 DMRT-like family C2 [Homo sapiens]
Length = 367
Score = 40.0 bits (92), Expect = 0.003
Identities = 57/199 (28%), Positives = 74/199 (37%), Gaps = 44/199 (22%)
Query: 54 ARCPPGAHACGPCLQPFQEDQQ---------GLCVPRMRRPPGGGRPQPRLEDEIDFLAQ 104
A PPG ++CGP L + G VP PPG P P +
Sbjct: 143 APTPPGKNSCGPLLLSHPPEASPLSWTPVPPGPWVPGHWLPPGFSMPPP--------VVC 194
Query: 105 ELARKESGHSTPPLPKDRQRLPEPATLGFSARGQGLELGLPS-TPGTPTPTPHTSLGSPV 163
L +E S PP P GF G L LP+ P T P H L +P+
Sbjct: 195 RLLYQEPAVSLPPFP------------GFD---PGTSLQLPTHGPFTTCPGSHPVLTAPL 239
Query: 164 SSDPVHMSPLEPRGG-----QGDGLALVLILAFCVAGAAALSVASLCWCRLQREIRLTQK 218
S +P P +PR Q G L L +GA+ L+ S E +L Q+
Sbjct: 240 SGEP-QGPPSQPRTHSTLILQPCGTPDPLQLQPQASGASCLARTS-----GPSEWQLQQE 293
Query: 219 ADYATAKAPGSPAAPRISP 237
A A S APR++P
Sbjct: 294 AAEALVGLKDSSQAPRVTP 312
>gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens]
Length = 476
Score = 39.3 bits (90), Expect = 0.005
Identities = 55/188 (29%), Positives = 71/188 (37%), Gaps = 20/188 (10%)
Query: 3 TPLPPPSPRHLRLL--RLLLSGLVLGAALRGAAAG-HPDVAACPGSLDCALKRRARCPPG 59
T LPP P R R + G GAA HP V CP ++ + P G
Sbjct: 5 TWLPPKQPEPARAPQGRAIPRGTPGPPPAHGAALQPHPRVNFCP----LPSEQCYQAPGG 60
Query: 60 AHACGPCL---QPFQEDQQGLCVPRMRRPPGGGRPQPRLEDEIDFLAQELARKESGHSTP 116
GP + QGL R GG RP L+ EID L+ LA G
Sbjct: 61 PEDRGPAWVGSHGVLQHTQGLPADR-----GGLRPGS-LDAEIDLLSSTLAELNGGRGHA 114
Query: 117 PLPKDRQRL--PEPATLGFSARGQGLELGLPSTP-GTPTPTPHTSLGSPVS-SDPVHMSP 172
DRQ P P + LP++P G PTP +T+ +P + PV +
Sbjct: 115 SRRPDRQAYEPPPPPAYRTGSLKPNPASPLPASPYGGPTPASYTTASTPAGPAFPVQVKV 174
Query: 173 LEPRGGQG 180
+P G G
Sbjct: 175 AQPVRGCG 182
>gi|169173182 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 35.8 bits (81), Expect = 0.053
Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 141 ELGLPSTPGTPTPTPHTSLGSPVSSDPVHMSPLE--PRGGQGDG 182
EL LP+ P P P P L P P H SP E PRG G G
Sbjct: 129 ELELPADPAQPDPAP---LSRPAPPRPAHQSPAEEGPRGAAGGG 169
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 35.8 bits (81), Expect = 0.053
Identities = 50/173 (28%), Positives = 68/173 (39%), Gaps = 25/173 (14%)
Query: 24 VLGAALRGAAAGHPDVAACPGSLDCALKRRARCPPGAHA--------CGPCLQPFQEDQQ 75
V G R AG P A G+L +R + P G G L P Q+ +
Sbjct: 1140 VPGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAK 1199
Query: 76 GLCVPRMRRPPGG-GRPQPRLEDEIDFLAQELARKESGHSTPPLPKDRQRLPEPATLGFS 134
G P R PPG GRP + EI F + +G K + P A+LGF
Sbjct: 1200 G--EPGFRGPPGPYGRPG--YKGEIGFPGRPGRPGMNGL------KGEKGEPGDASLGFG 1249
Query: 135 ARGQGLELGLPSTPGTP-TPTPHTSLGSPVSSD-----PVHMSPLEPRGGQGD 181
RG G P PG P TP +++ + S P + P P+G +G+
Sbjct: 1250 MRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGE 1302
Score = 28.9 bits (63), Expect = 6.5
Identities = 27/93 (29%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 80 PRMRRPPGGGRPQPRLEDEIDFLAQE---------LARKESGHSTPPLPKDRQRLP-EPA 129
P + PPG P R D++ F+ E R G PP P LP EP
Sbjct: 863 PGPQGPPGPPGPSFR-HDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPG 921
Query: 130 TLGFSARGQGLELGLPSTPGTPTPTPHTSLGSP 162
G ++ GLP PG P L P
Sbjct: 922 RFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGP 954
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 35.8 bits (81), Expect = 0.053
Identities = 50/173 (28%), Positives = 68/173 (39%), Gaps = 25/173 (14%)
Query: 24 VLGAALRGAAAGHPDVAACPGSLDCALKRRARCPPGAHA--------CGPCLQPFQEDQQ 75
V G R AG P A G+L +R + P G G L P Q+ +
Sbjct: 725 VPGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAK 784
Query: 76 GLCVPRMRRPPGG-GRPQPRLEDEIDFLAQELARKESGHSTPPLPKDRQRLPEPATLGFS 134
G P R PPG GRP + EI F + +G K + P A+LGF
Sbjct: 785 G--EPGFRGPPGPYGRPG--YKGEIGFPGRPGRPGMNGL------KGEKGEPGDASLGFG 834
Query: 135 ARGQGLELGLPSTPGTP-TPTPHTSLGSPVSSD-----PVHMSPLEPRGGQGD 181
RG G P PG P TP +++ + S P + P P+G +G+
Sbjct: 835 MRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGE 887
Score = 28.9 bits (63), Expect = 6.5
Identities = 27/93 (29%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 80 PRMRRPPGGGRPQPRLEDEIDFLAQE---------LARKESGHSTPPLPKDRQRLP-EPA 129
P + PPG P R D++ F+ E R G PP P LP EP
Sbjct: 448 PGPQGPPGPPGPSFR-HDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPG 506
Query: 130 TLGFSARGQGLELGLPSTPGTPTPTPHTSLGSP 162
G ++ GLP PG P L P
Sbjct: 507 RFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGP 539
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 35.8 bits (81), Expect = 0.053
Identities = 50/173 (28%), Positives = 68/173 (39%), Gaps = 25/173 (14%)
Query: 24 VLGAALRGAAAGHPDVAACPGSLDCALKRRARCPPGAHA--------CGPCLQPFQEDQQ 75
V G R AG P A G+L +R + P G G L P Q+ +
Sbjct: 905 VPGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAK 964
Query: 76 GLCVPRMRRPPGG-GRPQPRLEDEIDFLAQELARKESGHSTPPLPKDRQRLPEPATLGFS 134
G P R PPG GRP + EI F + +G K + P A+LGF
Sbjct: 965 G--EPGFRGPPGPYGRPG--YKGEIGFPGRPGRPGMNGL------KGEKGEPGDASLGFG 1014
Query: 135 ARGQGLELGLPSTPGTP-TPTPHTSLGSPVSSD-----PVHMSPLEPRGGQGD 181
RG G P PG P TP +++ + S P + P P+G +G+
Sbjct: 1015 MRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGE 1067
Score = 28.9 bits (63), Expect = 6.5
Identities = 27/93 (29%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 80 PRMRRPPGGGRPQPRLEDEIDFLAQE---------LARKESGHSTPPLPKDRQRLP-EPA 129
P + PPG P R D++ F+ E R G PP P LP EP
Sbjct: 628 PGPQGPPGPPGPSFR-HDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPG 686
Query: 130 TLGFSARGQGLELGLPSTPGTPTPTPHTSLGSP 162
G ++ GLP PG P L P
Sbjct: 687 RFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGP 719
>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 1 [Homo sapiens]
Length = 964
Score = 35.4 bits (80), Expect = 0.070
Identities = 44/163 (26%), Positives = 57/163 (34%), Gaps = 25/163 (15%)
Query: 35 GHPDVAACPGSLDCALKR-RARCPPGAHACGPCLQPFQEDQQGLCVPRM---RRPPGGGR 90
G P +A P D R P H C P+ + G +P + PP R
Sbjct: 763 GFPSASATPFGTDMDFSPPRPPYPSYPHEDPACETPYLSEGFGYGMPPLYPQTGPPPSYR 822
Query: 91 PQPRLEDEIDFLAQELARKESGHSTPPLPKDRQRLPEPATLGFSARGQGLELGLPSTPGT 150
P R+ E R +G + PP R P P+ + RG LGLP +P
Sbjct: 823 PGLRMFPE--------TRGTTGCAQPPAVSFLPR-PFPSD-PYGGRGSSFSLGLPFSPPA 872
Query: 151 PTPTPHTSLGSPV-----SSDPVHMSPLE------PRGGQGDG 182
P P P+ S VH P E P G G+G
Sbjct: 873 PFRPPPLPASPPLEGPFPSQSDVHPLPAEGYNKVGPGYGPGEG 915
>gi|27886563 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 2 [Homo sapiens]
Length = 902
Score = 35.4 bits (80), Expect = 0.070
Identities = 44/163 (26%), Positives = 57/163 (34%), Gaps = 25/163 (15%)
Query: 35 GHPDVAACPGSLDCALKR-RARCPPGAHACGPCLQPFQEDQQGLCVPRM---RRPPGGGR 90
G P +A P D R P H C P+ + G +P + PP R
Sbjct: 700 GFPSASATPFGTDMDFSPPRPPYPSYPHEDPACETPYLSEGFGYGMPPLYPQTGPPPSYR 759
Query: 91 PQPRLEDEIDFLAQELARKESGHSTPPLPKDRQRLPEPATLGFSARGQGLELGLPSTPGT 150
P R+ E R +G + PP R P P+ + RG LGLP +P
Sbjct: 760 PGLRMFPE--------TRGTTGCAQPPAVSFLPR-PFPSD-PYGGRGSSFSLGLPFSPPA 809
Query: 151 PTPTPHTSLGSPV-----SSDPVHMSPLE------PRGGQGDG 182
P P P+ S VH P E P G G+G
Sbjct: 810 PFRPPPLPASPPLEGPFPSQSDVHPLPAEGYNKVGPGYGPGEG 852
>gi|164565408 common-site lymphoma/leukemia guanine nucleotide
exchange factor [Homo sapiens]
Length = 1386
Score = 35.4 bits (80), Expect = 0.070
Identities = 37/145 (25%), Positives = 54/145 (37%), Gaps = 30/145 (20%)
Query: 58 PGAHACGPCLQPFQEDQQGLCVPRMRRPPGGGRPQPRLEDEIDFLAQELAR-KESGH--- 113
PG H L P Q + + P P P+ E + L + GH
Sbjct: 928 PGIHVSAATLLPEQGGSRHVQAP-------AATPLPKQEGPLHLQVPALTTFSDQGHPEI 980
Query: 114 ---STPPLPKDRQRL--PEPATLGFSARGQGLELGLPSTPGTP------------TPTPH 156
+T PLP+ R + P P+T +G ++ +P+TP P TP P
Sbjct: 981 QVPATTPLPEHRSHMVIPAPSTAFCPEQGHCADIHVPTTPALPKEICSDFTVSVTTPVPK 1040
Query: 157 TSLGSPVSSDPVHMSPLEPRGGQGD 181
G S P ++ PL +GG D
Sbjct: 1041 QE-GHLDSESPTNI-PLTKQGGSRD 1063
>gi|24497609 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 35.0 bits (79), Expect = 0.091
Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 4/159 (2%)
Query: 126 PEPATLGFSARGQGLELGLPSTPGTP-TPTPHTSLGSPVSSDPVHMSPLEPRGGQGDGLA 184
P T GFS + G G +T T T T T+ S + +++ PL P G + A
Sbjct: 249 PTAGTQGFSLKAPGAASGTSTTTSTAATATATTTSSSSTTGFALNLKPLAPAGIPSNTAA 308
Query: 185 LVLILAFCVAGAAALSVASLCWCRLQREIRLTQKADYATAKAPGSPAAPRISPGDQRLAQ 244
V A A A + +++ + +L+ I + + A +++ D+ L +
Sbjct: 309 AVTAPPGPGAAAGAAASSAMTYAQLESLIN-KWSLELEDQERHFLQQATQVNAWDRTLIE 367
Query: 245 SAEMYHYQHQRQQMLCLERHKEPPKELD-TASSDEENED 282
+ E H+ + + L++ K +ELD S +E ED
Sbjct: 368 NGEKITSLHREVEKVKLDQ-KRLDQELDFILSQQKELED 405
>gi|24497607 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 35.0 bits (79), Expect = 0.091
Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 4/159 (2%)
Query: 126 PEPATLGFSARGQGLELGLPSTPGTP-TPTPHTSLGSPVSSDPVHMSPLEPRGGQGDGLA 184
P T GFS + G G +T T T T T+ S + +++ PL P G + A
Sbjct: 249 PTAGTQGFSLKAPGAASGTSTTTSTAATATATTTSSSSTTGFALNLKPLAPAGIPSNTAA 308
Query: 185 LVLILAFCVAGAAALSVASLCWCRLQREIRLTQKADYATAKAPGSPAAPRISPGDQRLAQ 244
V A A A + +++ + +L+ I + + A +++ D+ L +
Sbjct: 309 AVTAPPGPGAAAGAAASSAMTYAQLESLIN-KWSLELEDQERHFLQQATQVNAWDRTLIE 367
Query: 245 SAEMYHYQHQRQQMLCLERHKEPPKELD-TASSDEENED 282
+ E H+ + + L++ K +ELD S +E ED
Sbjct: 368 NGEKITSLHREVEKVKLDQ-KRLDQELDFILSQQKELED 405
>gi|24497605 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 35.0 bits (79), Expect = 0.091
Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 4/159 (2%)
Query: 126 PEPATLGFSARGQGLELGLPSTPGTP-TPTPHTSLGSPVSSDPVHMSPLEPRGGQGDGLA 184
P T GFS + G G +T T T T T+ S + +++ PL P G + A
Sbjct: 249 PTAGTQGFSLKAPGAASGTSTTTSTAATATATTTSSSSTTGFALNLKPLAPAGIPSNTAA 308
Query: 185 LVLILAFCVAGAAALSVASLCWCRLQREIRLTQKADYATAKAPGSPAAPRISPGDQRLAQ 244
V A A A + +++ + +L+ I + + A +++ D+ L +
Sbjct: 309 AVTAPPGPGAAAGAAASSAMTYAQLESLIN-KWSLELEDQERHFLQQATQVNAWDRTLIE 367
Query: 245 SAEMYHYQHQRQQMLCLERHKEPPKELD-TASSDEENED 282
+ E H+ + + L++ K +ELD S +E ED
Sbjct: 368 NGEKITSLHREVEKVKLDQ-KRLDQELDFILSQQKELED 405
>gi|24497603 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 35.0 bits (79), Expect = 0.091
Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 4/159 (2%)
Query: 126 PEPATLGFSARGQGLELGLPSTPGTP-TPTPHTSLGSPVSSDPVHMSPLEPRGGQGDGLA 184
P T GFS + G G +T T T T T+ S + +++ PL P G + A
Sbjct: 249 PTAGTQGFSLKAPGAASGTSTTTSTAATATATTTSSSSTTGFALNLKPLAPAGIPSNTAA 308
Query: 185 LVLILAFCVAGAAALSVASLCWCRLQREIRLTQKADYATAKAPGSPAAPRISPGDQRLAQ 244
V A A A + +++ + +L+ I + + A +++ D+ L +
Sbjct: 309 AVTAPPGPGAAAGAAASSAMTYAQLESLIN-KWSLELEDQERHFLQQATQVNAWDRTLIE 367
Query: 245 SAEMYHYQHQRQQMLCLERHKEPPKELD-TASSDEENED 282
+ E H+ + + L++ K +ELD S +E ED
Sbjct: 368 NGEKITSLHREVEKVKLDQ-KRLDQELDFILSQQKELED 405
>gi|116734706 interferon regulatory factor 2 binding protein 2
isoform B [Homo sapiens]
Length = 571
Score = 35.0 bits (79), Expect = 0.091
Identities = 50/225 (22%), Positives = 75/225 (33%), Gaps = 43/225 (19%)
Query: 78 CVPRMRRPPGGG-----RPQPRLEDEIDFLAQELARKESGHSTPPLPKDRQRLP------ 126
C P R PPG +P P +I Q+ + P P+ +R P
Sbjct: 65 CFPEGRSPPGAAASAAAKPPPLSAKDILLQQQQQLGHGGPEAAPRAPQALERYPLAAAAE 124
Query: 127 EPATLGFSARGQGLELGLPSTPGTPTPTPHTSL----GSPVSSDPVHMSPLEPRGGQG-- 180
P LG S G + P TP P P + G +P ++ P +G
Sbjct: 125 RPPRLG-SDFGSSRPAASLAQPPTPQPPPVNGILVPNGFSKLEEPPELNRQSPNPRRGHA 183
Query: 181 ---------DGLALVLILAFCVAGAAALSVASLCWCRLQREIRLTQKADYATAKAPGSPA 231
+G A L A + G AA S+A++ TA A A
Sbjct: 184 VPPTLVPLMNGSATPLPTALGLGGRAAASLAAVS----------------GTAAASLGSA 227
Query: 232 APRISPGDQRLAQSAEMYHYQHQRQQMLCLERHKEPPKELDTASS 276
P +R A + +H++++ E+ PP A S
Sbjct: 228 QPTDLGAHKRPASVSSSAAVEHEQREAAAKEKQPPPPAHRGPADS 272
>gi|116734704 interferon regulatory factor 2 binding protein 2
isoform A [Homo sapiens]
Length = 587
Score = 35.0 bits (79), Expect = 0.091
Identities = 50/225 (22%), Positives = 75/225 (33%), Gaps = 43/225 (19%)
Query: 78 CVPRMRRPPGGG-----RPQPRLEDEIDFLAQELARKESGHSTPPLPKDRQRLP------ 126
C P R PPG +P P +I Q+ + P P+ +R P
Sbjct: 65 CFPEGRSPPGAAASAAAKPPPLSAKDILLQQQQQLGHGGPEAAPRAPQALERYPLAAAAE 124
Query: 127 EPATLGFSARGQGLELGLPSTPGTPTPTPHTSL----GSPVSSDPVHMSPLEPRGGQG-- 180
P LG S G + P TP P P + G +P ++ P +G
Sbjct: 125 RPPRLG-SDFGSSRPAASLAQPPTPQPPPVNGILVPNGFSKLEEPPELNRQSPNPRRGHA 183
Query: 181 ---------DGLALVLILAFCVAGAAALSVASLCWCRLQREIRLTQKADYATAKAPGSPA 231
+G A L A + G AA S+A++ TA A A
Sbjct: 184 VPPTLVPLMNGSATPLPTALGLGGRAAASLAAVS----------------GTAAASLGSA 227
Query: 232 APRISPGDQRLAQSAEMYHYQHQRQQMLCLERHKEPPKELDTASS 276
P +R A + +H++++ E+ PP A S
Sbjct: 228 QPTDLGAHKRPASVSSSAAVEHEQREAAAKEKQPPPPAHRGPADS 272
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 34.7 bits (78), Expect = 0.12
Identities = 45/160 (28%), Positives = 58/160 (36%), Gaps = 36/160 (22%)
Query: 55 RCPPGAHAC-GPCLQPFQEDQQGLCVPRMRRPPGGGRPQPRLEDEIDFLAQELARKESGH 113
R PGA C G +P ++ GL R R G P E E+ ++Q+ E G
Sbjct: 920 RGKPGAEGCPGAKGEPGEKGMSGLPGDRGLRGAKGAIGPPGDEGEMAIISQKGTPGEPG- 978
Query: 114 STPP-------------LPKDRQRLPEPATLGFSA--RGQGLELGLPSTPGTPTPTPHTS 158
PP P + R EP G RG+ E G P PG P P T
Sbjct: 979 --PPGDDGFPGERGDKGTPGMQGRRGEPGRYGPPGFHRGEPGEKGQPGPPGPPGPPGSTG 1036
Query: 159 L-------------GSPVSSDPVHMSPLE----PRGGQGD 181
L G P S P S ++ P+G +GD
Sbjct: 1037 LRGFIGFPGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGD 1076
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 34.7 bits (78), Expect = 0.12
Identities = 31/114 (27%), Positives = 39/114 (34%), Gaps = 13/114 (11%)
Query: 57 PPGAHACGPCLQPFQEDQQGLCVPR---MRRPPGGGRPQPRLEDEIDFLAQELARKESGH 113
PP P P LC P + PP P P ++E ++ES
Sbjct: 408 PPAPSPPPPLPPPSTSPPPPLCPPPPPPVSPPPLPSPPPPPAQEE---------QEESPP 458
Query: 114 STPPLPKDRQRLPEPATLGFSARGQGLELGLPSTPGTPTPTPHTSLGSPVSSDP 167
P R+R P T A + G P PTPTP T+ G P P
Sbjct: 459 PVVPATCSRKRGRPPLTPSQRAEREAARAG-PEGTSPPTPTPSTATGGPPEDSP 511
>gi|239754253 PREDICTED: hypothetical protein XP_002345936 [Homo
sapiens]
Length = 145
Score = 34.3 bits (77), Expect = 0.16
Identities = 29/70 (41%), Positives = 34/70 (48%), Gaps = 16/70 (22%)
Query: 107 ARKESGHST----PPLP-------KDRQRLPEPATLGFSAR-GQGLELGLPSTPGTPTPT 154
ARK S S PP P + R+R P P T+G R L LGL G P P
Sbjct: 71 ARKRSAPSAMLLEPPHPSAAAAPLQRRRRTPPPGTVGSKRRCPPRLRLGL----GFPYPG 126
Query: 155 PHTSLGSPVS 164
P +SLGSP+S
Sbjct: 127 PASSLGSPLS 136
>gi|239748791 PREDICTED: hypothetical protein XP_002346804 [Homo
sapiens]
Length = 145
Score = 34.3 bits (77), Expect = 0.16
Identities = 29/70 (41%), Positives = 34/70 (48%), Gaps = 16/70 (22%)
Query: 107 ARKESGHST----PPLP-------KDRQRLPEPATLGFSAR-GQGLELGLPSTPGTPTPT 154
ARK S S PP P + R+R P P T+G R L LGL G P P
Sbjct: 71 ARKRSAPSAMLLEPPHPSAAAAPLQRRRRTPPPGTVGSKRRCPPRLRLGL----GFPYPG 126
Query: 155 PHTSLGSPVS 164
P +SLGSP+S
Sbjct: 127 PASSLGSPLS 136
>gi|239742828 PREDICTED: hypothetical protein XP_002342673 [Homo
sapiens]
Length = 145
Score = 34.3 bits (77), Expect = 0.16
Identities = 29/70 (41%), Positives = 34/70 (48%), Gaps = 16/70 (22%)
Query: 107 ARKESGHST----PPLP-------KDRQRLPEPATLGFSAR-GQGLELGLPSTPGTPTPT 154
ARK S S PP P + R+R P P T+G R L LGL G P P
Sbjct: 71 ARKRSAPSAMLLEPPHPSAAAAPLQRRRRTPPPGTVGSKRRCPPRLRLGL----GFPYPG 126
Query: 155 PHTSLGSPVS 164
P +SLGSP+S
Sbjct: 127 PASSLGSPLS 136
>gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo
sapiens]
Length = 1283
Score = 34.3 bits (77), Expect = 0.16
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 21/103 (20%)
Query: 84 RPPGGGRPQPRLEDEIDFLAQELAR----KESGHSTPPLPKDRQRLPEPATLGFSARGQG 139
R P +PRLE + AQ AR +S S PPLP + P+ LG A
Sbjct: 531 RAPQTRAVKPRLEVSPE--AQPTARLPSPTDSPSSLPPLPSSSGQASVPSELGHGA---- 584
Query: 140 LELGLPSTPGTPTPTPHTSLGSPV-----SSDPVHMSPLEPRG 177
T + +P+ +SL SP+ +S P+ PL RG
Sbjct: 585 ------DTQSSESPSVFSSLSSPIAAPISTSTPIESWPLVDRG 621
>gi|148727370 immediate early response 5-like [Homo sapiens]
Length = 404
Score = 34.3 bits (77), Expect = 0.16
Identities = 31/110 (28%), Positives = 41/110 (37%), Gaps = 8/110 (7%)
Query: 219 ADYATAKAPGSPAAPRISPGDQRLAQSAEMYHYQHQRQQMLCLERHKEP-PKELDTASSD 277
AD+ + G A P + H H +QQ L +H+ P P+ A++
Sbjct: 87 ADFGPLQLGGGGDAEAREPAARHQLHQLHQLHQLHLQQQ---LHQHQHPAPRGCAAAAAA 143
Query: 278 EENEDGDFTVYECPGLA----PTGEMEVRNPLFDHAALSAPLPAPSSPPA 323
G + E PG A P G PL APLP P PPA
Sbjct: 144 GAPAGGAGALSELPGCAALQPPHGAPHRGQPLEPLQPGPAPLPLPLPPPA 193
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 33.9 bits (76), Expect = 0.20
Identities = 54/203 (26%), Positives = 69/203 (33%), Gaps = 24/203 (11%)
Query: 1 MATPLPPPSPRHL-----RLLRLLLSGLVLGAALRGAAAGHPDVAACPGSLDCALKRRAR 55
+ TP PP SPR LR+L + +G AG A P S A R
Sbjct: 24 LLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRTS 83
Query: 56 CPPGAHACGPCLQPFQEDQQGLCVPRMRRPPGGGRPQPRLEDEIDFLAQELARKESGHST 115
PP A G P + G V R G RP P + + A+E +
Sbjct: 84 RPP-ASGRGERAPPAKNTSPGP-VSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEA 141
Query: 116 PP---LPKDRQR--------LPEPATLGFSARGQGLELGLP-----STPGTPTPTPHTSL 159
P L +R P PA + +R G E+GLP + P PT P S+
Sbjct: 142 PKRSALSAGARRDTSGPTPGTPSPA-MARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSV 200
Query: 160 GSPVSSDPVHMSPLEPRGGQGDG 182
S SP R G
Sbjct: 201 SSASEHSTTEPSPAARRRPSAGG 223
Score = 30.8 bits (68), Expect = 1.7
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 83 RRPPGGGRPQPRLEDEIDFLAQELARKESGHSTPPLPKDRQRLPEPATLGFSARGQGLEL 142
R P +P+P+ + RK++ + PL P P+ + L+
Sbjct: 255 RAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQT 314
Query: 143 GLPSTPGTPTPTPHTSLGSP 162
LPS P TP TSLGSP
Sbjct: 315 -LPSPPATPPSQATTSLGSP 333
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 33.5 bits (75), Expect = 0.26
Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 126 PEPATLGFSARGQGLELGL---PSTPGTPTPTPHTSLGSPVSSDPVHMSPLEPRGG 178
P P GF G G G+ P PG P P PH G PV + P PRGG
Sbjct: 622 PGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPP-PPRGG 676
>gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo
sapiens]
Length = 330
Score = 33.5 bits (75), Expect = 0.26
Identities = 44/166 (26%), Positives = 54/166 (32%), Gaps = 16/166 (9%)
Query: 9 SPRHLRLLRLLLSGLVLGAA-----LRGAAAGHPDVAACPGS----LDCALKRRARCPPG 59
SP + R SG LG A G GH V+A P DC+ R PPG
Sbjct: 118 SPSGAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPG 177
Query: 60 AHACGPCLQ----PFQEDQQGLCVPRMRRPPGGGRPQPRLEDEIDFLAQELARKESGHST 115
P +G C P G P+P FL +E
Sbjct: 178 PARTEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPF 237
Query: 116 PPLPKDRQRLPEPATLGFSARGQGLELGLPS---TPGTPTPTPHTS 158
P P R +P L G L P+ TPG+ P+P S
Sbjct: 238 PSRPGPRTPVPTAPYLAVLPERGGRALTTPALARTPGSLAPSPPPS 283
>gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo
sapiens]
Length = 330
Score = 33.5 bits (75), Expect = 0.26
Identities = 44/166 (26%), Positives = 54/166 (32%), Gaps = 16/166 (9%)
Query: 9 SPRHLRLLRLLLSGLVLGAA-----LRGAAAGHPDVAACPGS----LDCALKRRARCPPG 59
SP + R SG LG A G GH V+A P DC+ R PPG
Sbjct: 118 SPSGAEMDRAPRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPG 177
Query: 60 AHACGPCLQ----PFQEDQQGLCVPRMRRPPGGGRPQPRLEDEIDFLAQELARKESGHST 115
P +G C P G P+P FL +E
Sbjct: 178 PARTEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPF 237
Query: 116 PPLPKDRQRLPEPATLGFSARGQGLELGLPS---TPGTPTPTPHTS 158
P P R +P L G L P+ TPG+ P+P S
Sbjct: 238 PSRPGPRTPVPTAPYLAVLPERGGRALTTPALARTPGSLAPSPPPS 283
>gi|39930351 dynamin binding protein [Homo sapiens]
Length = 1577
Score = 33.5 bits (75), Expect = 0.26
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 97 DEIDFLAQELARKESGHSTPPLPKDRQRLPEPATLGFSARGQGLELGLPSTPGTPTPTPH 156
+E D + E GH T DR + T G R G+E +P +PT P
Sbjct: 347 EEPDCIISEAPTSPLGHLTSEYDTDRNSYQDEDTAGGPPRSPGVEWEMPLATDSPTSDP- 405
Query: 157 TSLGSPVSSDP 167
T + + +SS P
Sbjct: 406 TEVVNGISSQP 416
>gi|45827729 scribble isoform b [Homo sapiens]
Length = 1630
Score = 33.5 bits (75), Expect = 0.26
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 145 PSTPGTPTPTPHTSLGSPVSSDPVHMSP--------LEPRGGQG----DGLALVLILAFC 192
PS TP+PTP LG S+ P +SP LEP G DG +++L
Sbjct: 1540 PSPAPTPSPTPVEDLGPQTSTSPGRLSPDFAEELRSLEPSPSPGPQEEDGEVALVLLGRP 1599
Query: 193 VAGAAALSVASLCWCR 208
GA +LC R
Sbjct: 1600 SPGAVGPEDVALCSSR 1615
>gi|50593008 transmembrane BAX inhibitor motif containing 1 [Homo
sapiens]
Length = 311
Score = 33.5 bits (75), Expect = 0.26
Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 111 SGHSTPPLPKDRQRL-PEPATLGFSARGQGLELGLPSTPGTPTPTPHTSLGSPVSSDPVH 169
S S PP +DR L P P G + L G P+ PG P P G P P H
Sbjct: 2 SNPSAPPPYEDRNPLYPGPPPPGGYGQPSVLPGGYPAYPGYPQPGYGHPAGYPQPMPPTH 61
Query: 170 MSPLEPRGGQG 180
P+ G G
Sbjct: 62 PMPMNYGPGHG 72
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,263,249
Number of Sequences: 37866
Number of extensions: 1181507
Number of successful extensions: 6760
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 242
Number of HSP's that attempted gapping in prelim test: 6366
Number of HSP's gapped (non-prelim): 698
length of query: 325
length of database: 18,247,518
effective HSP length: 102
effective length of query: 223
effective length of database: 14,385,186
effective search space: 3207896478
effective search space used: 3207896478
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.