Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: NPDC1 Sequence: fasta or formatted (325aa) NCBI GI: 223029449
Description:

neural proliferation, differentiation and control, 1

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         38           3
 C cysteine            3.4         11           1
 D aspartate           4.6         15           1
 E glutamate           5.8         19           2
 F phenylalanine       1.8          6           1
 G glycine             8.6         28           3
 H histidine           3.1         10           1
 I isoleucine          1.2          4           1
 K lysine              2.2          7           1
 L leucine            12.9         42           3
 M methionine          1.8          6           1
 N asparagine          0.6          2           1
 P proline            13.8         45           3
 Q glutamine           5.2         17           2
 R arginine            7.7         25           2
 S serine              6.8         22           2
 T threonine           4.0         13           1
 V valine              3.1         10           1
 W tryptophan          0.3          1           1
 Y tyrosine            1.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neural proliferation, differentiation and control, ... 
DMRTC2                0.023   DMRT-like family C2 
TRIP6                 0.022   thyroid receptor-interacting protein 6 
LOC100129129          0.017   PREDICTED: hypothetical protein 
COL18A1               0.017   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.017   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.017   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
NFATC4                0.015   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC4                0.015   nuclear factor of activated T-cells, cytoplasmic, ca...
PLEKHG2               0.015   common-site lymphoma/leukemia guanine nucleotide ex...
NUP62                 0.015   nucleoporin 62kDa 
NUP62                 0.015   nucleoporin 62kDa 
NUP62                 0.015   nucleoporin 62kDa 
NUP62                 0.015   nucleoporin 62kDa 
IRF2BP2               0.015   interferon regulatory factor 2 binding protein 2 is...
IRF2BP2               0.015   interferon regulatory factor 2 binding protein 2 is...
COL4A4                0.015   alpha 4 type IV collagen precursor 
MLL4                  0.015   myeloid/lymphoid or mixed-lineage leukemia 4 
LOC100291674          0.014   PREDICTED: hypothetical protein XP_002345936 
LOC100290526          0.014   PREDICTED: hypothetical protein XP_002346804 
LOC100288875          0.014   PREDICTED: hypothetical protein XP_002342673 
RAB11FIP1             0.014   RAB11 family interacting protein 1 isoform 3 
IER5L                 0.014   immediate early response 5-like 
FLJ22184              0.014   PREDICTED: hypothetical protein LOC80164 
PPP1R10               0.012   protein phosphatase 1, regulatory subunit 10 
LOC100291627          0.012   PREDICTED: hypothetical protein XP_002345251 
LOC100289867          0.012   PREDICTED: hypothetical protein XP_002348034 
DNMBP                 0.012   dynamin binding protein 
SCRIB                 0.012   scribble isoform b 
TMBIM1                0.012   transmembrane BAX inhibitor motif containing 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press