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Search of human proteins with 22218621
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22218621 hypothetical protein LOC203259 [Homo sapiens]
(168 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22218621 hypothetical protein LOC203259 [Homo sapiens] 342 7e-95
gi|33457346 hypothetical protein LOC57184 [Homo sapiens] 119 9e-28
gi|224177469 SET domain, bifurcated 1 isoform 2 [Homo sapiens] 35 0.040
gi|224177467 SET domain, bifurcated 1 isoform 1 [Homo sapiens] 35 0.040
gi|166795264 AE binding protein 2 isoform b [Homo sapiens] 33 0.088
gi|166795262 AE binding protein 2 isoform a [Homo sapiens] 33 0.088
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 31 0.57
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 31 0.57
gi|56118310 nuclear casein kinase and cyclin-dependent kinase su... 30 1.3
gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens] 30 1.3
gi|193083172 nuclear assembly factor 1 homolog isoform b [Homo s... 29 1.7
gi|193083157 nuclear assembly factor 1 homolog isoform a [Homo s... 29 1.7
gi|223890207 mouse double minute 2 homolog isoform MDM2i [Homo s... 29 2.2
gi|223890205 mouse double minute 2 homolog isoform MDM2h [Homo s... 29 2.2
gi|223890201 mouse double minute 2 homolog isoform MDM2g [Homo s... 29 2.2
gi|223890197 mouse double minute 2 homolog isoform MDM2f [Homo s... 29 2.2
gi|89993689 mouse double minute 2 homolog isoform MDM2 [Homo sap... 29 2.2
gi|169172183 PREDICTED: similar to hCG19534 [Homo sapiens] 29 2.2
gi|169170925 PREDICTED: similar to hCG19534 [Homo sapiens] 29 2.2
gi|239508729 PREDICTED: similar to hCG19534 [Homo sapiens] 29 2.2
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 29 2.2
gi|226495417 coiled-coil domain containing 102A [Homo sapiens] 28 3.7
gi|44888833 PDZ domain containing 6 [Homo sapiens] 28 3.7
gi|90903231 huntingtin [Homo sapiens] 28 4.8
gi|34996489 pleckstrin homology domain interacting protein [Homo... 28 4.8
gi|33350928 disabled homolog 1 [Homo sapiens] 28 4.8
gi|14277685 protocadherin gamma subfamily C, 5 isoform 2 precurs... 28 4.8
gi|14149728 BarH-like homeobox 1 [Homo sapiens] 28 4.8
gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precurs... 28 4.8
gi|195976782 Paf1/RNA polymerase II complex component [Homo sapi... 28 4.8
>gi|22218621 hypothetical protein LOC203259 [Homo sapiens]
Length = 168
Score = 342 bits (878), Expect = 7e-95
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MMEEIDRFQVPTAHSEMQPLDPAAASISDGDCDAREEKQRELARKGSLKNGSMGSPVNQQ 60
MMEEIDRFQVPTAHSEMQPLDPAAASISDGDCDAREEKQRELARKGSLKNGSMGSPVNQQ
Sbjct: 1 MMEEIDRFQVPTAHSEMQPLDPAAASISDGDCDAREEKQRELARKGSLKNGSMGSPVNQQ 60
Query: 61 PKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSAEQINQ 120
PKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSAEQINQ
Sbjct: 61 PKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSAEQINQ 120
Query: 121 DLNIQLLKDGYRLDEIPDDEDLDLIPPKSVNPTCMCCQATSSTACHIQ 168
DLNIQLLKDGYRLDEIPDDEDLDLIPPKSVNPTCMCCQATSSTACHIQ
Sbjct: 121 DLNIQLLKDGYRLDEIPDDEDLDLIPPKSVNPTCMCCQATSSTACHIQ 168
>gi|33457346 hypothetical protein LOC57184 [Homo sapiens]
Length = 198
Score = 119 bits (299), Expect = 9e-28
Identities = 71/138 (51%), Positives = 93/138 (67%), Gaps = 11/138 (7%)
Query: 34 AREEKQRELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVA 93
A+ +K R+LA+ + G +G+ N+ R V NKGY++L QSPDE LV+
Sbjct: 69 AKLQKHRDLAKAVLRRKGMLGASPNRPDSSGK-----RSVKFNKGYTALSQSPDEN-LVS 122
Query: 94 LDTDSDDDFDMSRYSSSGYSSAEQINQDLNIQLLKDGYRLDEIPDDEDLDLIPPKSV-NP 152
LD+DSD + SRYSS GYSSAEQ+NQD++ QLL+DGY LDEIPDDEDLDLIPPK + +
Sbjct: 123 LDSDSDGELG-SRYSS-GYSSAEQVNQDVSRQLLQDGYHLDEIPDDEDLDLIPPKPMASS 180
Query: 153 TCMCCQAT--SSTACHIQ 168
TC CC S++C +Q
Sbjct: 181 TCSCCWCCLGDSSSCTLQ 198
>gi|224177469 SET domain, bifurcated 1 isoform 2 [Homo sapiens]
Length = 1290
Score = 34.7 bits (78), Expect = 0.040
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 33 DAREEKQRELARKGSLKNGSMGSPVNQQ-----PKKNNVMARTRLVVPNKGYSSLDQSPD 87
D + + + + S G SPV + P K ++ RL+ +S +PD
Sbjct: 1044 DTDDRNKMSVVTESSRNYGYNPSPVKPEGLRRPPSKTSMHQSRRLM------ASAQSNPD 1097
Query: 88 EKPLVALDTDSDDDFDMSRYSSSGYSSAEQINQDLNIQLLKDGYRLDEIPDDEDL 142
+ ++ T+S+ + SR ++G +SA ++ D +IQ + G D+ D +++
Sbjct: 1098 DVLTLSSSTESEGESGTSRKPTAGQTSATAVDSD-DIQTISSGSEGDDFEDKKNM 1151
>gi|224177467 SET domain, bifurcated 1 isoform 1 [Homo sapiens]
Length = 1291
Score = 34.7 bits (78), Expect = 0.040
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 33 DAREEKQRELARKGSLKNGSMGSPVNQQ-----PKKNNVMARTRLVVPNKGYSSLDQSPD 87
D + + + + S G SPV + P K ++ RL+ +S +PD
Sbjct: 1044 DTDDRNKMSVVTESSRNYGYNPSPVKPEGLRRPPSKTSMHQSRRLM------ASAQSNPD 1097
Query: 88 EKPLVALDTDSDDDFDMSRYSSSGYSSAEQINQDLNIQLLKDGYRLDEIPDDEDL 142
+ ++ T+S+ + SR ++G +SA ++ D +IQ + G D+ D +++
Sbjct: 1098 DVLTLSSSTESEGESGTSRKPTAGQTSATAVDSD-DIQTISSGSEGDDFEDKKNM 1151
>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
Length = 517
Score = 33.5 bits (75), Expect = 0.088
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 28/126 (22%)
Query: 12 TAHSEMQPLDPAAASISDGDCDAREEKQRELARKGSLKNGSMGSPVNQQPKKNNVMARTR 71
++ E + L P AAS S GD D +E + +GS G GS +
Sbjct: 132 SSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGGSSSSSVVSSGG------ 185
Query: 72 LVVPNKGY---------------SSLDQSPDEKPLVALDTD---SDDDFDMSRYSSSGYS 113
++GY SL+ S D +PL +D++ S D+ SSG S
Sbjct: 186 ----DEGYGTGGGGSSATSGGRRGSLEMSSDGEPLSRMDSEDSISSTIMDVDSTISSGRS 241
Query: 114 SAEQIN 119
+ +N
Sbjct: 242 TPAMMN 247
>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
Length = 503
Score = 33.5 bits (75), Expect = 0.088
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 28/126 (22%)
Query: 12 TAHSEMQPLDPAAASISDGDCDAREEKQRELARKGSLKNGSMGSPVNQQPKKNNVMARTR 71
++ E + L P AAS S GD D +E + +GS G GS +
Sbjct: 132 SSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGGSSSSSVVSSGG------ 185
Query: 72 LVVPNKGY---------------SSLDQSPDEKPLVALDTD---SDDDFDMSRYSSSGYS 113
++GY SL+ S D +PL +D++ S D+ SSG S
Sbjct: 186 ----DEGYGTGGGGSSATSGGRRGSLEMSSDGEPLSRMDSEDSISSTIMDVDSTISSGRS 241
Query: 114 SAEQIN 119
+ +N
Sbjct: 242 TPAMMN 247
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 30.8 bits (68), Expect = 0.57
Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 33 DAREEKQRELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVPNKGYS---SLDQSPDEK 89
D E+K+ E ++ L+NG +N + +K N+ R + + G++ SL Q+ +
Sbjct: 1659 DKEEKKEEEEKKEVMLQNGETPKDLNDEKQKKNIKQRFMFNIADGGFTELHSLWQNEERA 1718
Query: 90 PLVALDT-----DSDDDFDMSRYSSSGYSSAEQINQDLNIQLLKDGYR 132
V T D + ++ + GY+ + I D +L + ++
Sbjct: 1719 ATVTKKTYEIWHRRHDYWLLAGIINHGYARWQDIQNDPRYAILNEPFK 1766
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 30.8 bits (68), Expect = 0.57
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Query: 1 MMEEIDRFQVPTAHSEMQPLDPAAASISDGDCDAREEKQRELARKGSLKNGSMGSPVNQQ 60
M+EE ++ + E + L+ A S + R + + L K ++ + + + + QQ
Sbjct: 30 MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNIYSKFLLTKMEQQ 89
Query: 61 P-----KKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSA 115
KK + + + KG +S+D S +EKP++ +D+ Y+ S S
Sbjct: 90 QLEEQKKKEKLERKKESLKVKKGKNSIDAS-EEKPVMRKKRGREDE----SYNISEVMSK 144
Query: 116 EQI 118
E+I
Sbjct: 145 EEI 147
>gi|56118310 nuclear casein kinase and cyclin-dependent kinase
substrate 1 [Homo sapiens]
Length = 243
Score = 29.6 bits (65), Expect = 1.3
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 31 DCDAREEKQRELARKGSLKNGSMGSPVNQQPKKNNVMA--RTRLVVPNKGYSSLDQSPDE 88
D D + +K + + S V QQ + + A + +++ + G + DE
Sbjct: 63 DKDVKTKKDDSHSAEDSEDEKEDHKNVRQQRQAASKAASKQREMLMEDVGSEEEQEEEDE 122
Query: 89 KPLVALDTDSDDDFDMSRYSSSGYSSAEQINQDL 122
P D+ SD+DF M S Y S+++ N+ +
Sbjct: 123 APFQEKDSGSDEDFLMEDDDDSDYGSSKKKNKKM 156
>gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens]
Length = 951
Score = 29.6 bits (65), Expect = 1.3
Identities = 34/113 (30%), Positives = 39/113 (34%), Gaps = 7/113 (6%)
Query: 6 DRFQVPTAHSEMQPLDPAAASISDGDCDAREEKQREL---ARKGSLKNGSMGSPVNQQPK 62
D Q +A E P D A SD D E E+ A G K S V
Sbjct: 513 DSMQAVSAPEEA-PTDSAPEKPSDAGEDGAPEDAAEVGARAGSGGKKEASSSKTVPDGKL 571
Query: 63 KNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSA 115
A + K D P EK V LD DSDDD + S S+A
Sbjct: 572 VKASFAPISFAIKAK---ENDLLPLEKNRVKLDDDSDDDEESKEGQESSSSAA 621
>gi|193083172 nuclear assembly factor 1 homolog isoform b [Homo
sapiens]
Length = 389
Score = 29.3 bits (64), Expect = 1.7
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 24/101 (23%)
Query: 74 VPNKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSAEQI--------------- 118
V + G + ++PD D+DSD + D SSS SS+
Sbjct: 96 VTSPGAAEPARAPDSLETSDSDSDSDSETDSDSSSSSSSSSSSSSSSSSSCISLPPVLSD 155
Query: 119 -NQDLNIQ--------LLKDGYRLDEIPDDEDLDLIPPKSV 150
+ DL I+ KD L+E+P E+L +I P+ +
Sbjct: 156 GDDDLQIEKENKNFPLKTKDELLLNELPSVEELTIILPEDI 196
>gi|193083157 nuclear assembly factor 1 homolog isoform a [Homo
sapiens]
Length = 494
Score = 29.3 bits (64), Expect = 1.7
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 24/101 (23%)
Query: 74 VPNKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSAEQI--------------- 118
V + G + ++PD D+DSD + D SSS SS+
Sbjct: 96 VTSPGAAEPARAPDSLETSDSDSDSDSETDSDSSSSSSSSSSSSSSSSSSCISLPPVLSD 155
Query: 119 -NQDLNIQ--------LLKDGYRLDEIPDDEDLDLIPPKSV 150
+ DL I+ KD L+E+P E+L +I P+ +
Sbjct: 156 GDDDLQIEKENKNFPLKTKDELLLNELPSVEELTIILPEDI 196
>gi|223890207 mouse double minute 2 homolog isoform MDM2i [Homo
sapiens]
Length = 295
Score = 28.9 bits (63), Expect = 2.2
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 19/127 (14%)
Query: 41 ELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDD 100
E++ K L+N + Q + +V + +V + S ++++ D+ + +S+D
Sbjct: 144 EISEKAKLENST------QAEEGFDVPDCKKTIVNDSRESCVEENDDKITQASQSQESED 197
Query: 101 DFDMSRYSSSGYSSAEQINQDLNIQLLKDGYRLDEIPDDEDL--DLIPPKSVNPTCMCCQ 158
S SS YSS E + + + +E D E+ +P ++ P C+ CQ
Sbjct: 198 YSQPSTSSSIIYSSQEDVKE----------FEREETQDKEESVESSLPLNAIEP-CVICQ 246
Query: 159 ATSSTAC 165
C
Sbjct: 247 GRPKNGC 253
>gi|223890205 mouse double minute 2 homolog isoform MDM2h [Homo
sapiens]
Length = 442
Score = 28.9 bits (63), Expect = 2.2
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 19/127 (14%)
Query: 41 ELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDD 100
E++ K L+N + Q + +V + +V + S ++++ D+ + +S+D
Sbjct: 291 EISEKAKLENST------QAEEGFDVPDCKKTIVNDSRESCVEENDDKITQASQSQESED 344
Query: 101 DFDMSRYSSSGYSSAEQINQDLNIQLLKDGYRLDEIPDDEDL--DLIPPKSVNPTCMCCQ 158
S SS YSS E + + + +E D E+ +P ++ P C+ CQ
Sbjct: 345 YSQPSTSSSIIYSSQEDVKE----------FEREETQDKEESVESSLPLNAIEP-CVICQ 393
Query: 159 ATSSTAC 165
C
Sbjct: 394 GRPKNGC 400
>gi|223890201 mouse double minute 2 homolog isoform MDM2g [Homo
sapiens]
Length = 444
Score = 28.9 bits (63), Expect = 2.2
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 19/127 (14%)
Query: 41 ELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDD 100
E++ K L+N + Q + +V + +V + S ++++ D+ + +S+D
Sbjct: 293 EISEKAKLENST------QAEEGFDVPDCKKTIVNDSRESCVEENDDKITQASQSQESED 346
Query: 101 DFDMSRYSSSGYSSAEQINQDLNIQLLKDGYRLDEIPDDEDL--DLIPPKSVNPTCMCCQ 158
S SS YSS E + + + +E D E+ +P ++ P C+ CQ
Sbjct: 347 YSQPSTSSSIIYSSQEDVKE----------FEREETQDKEESVESSLPLNAIEP-CVICQ 395
Query: 159 ATSSTAC 165
C
Sbjct: 396 GRPKNGC 402
>gi|223890197 mouse double minute 2 homolog isoform MDM2f [Homo
sapiens]
Length = 452
Score = 28.9 bits (63), Expect = 2.2
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 19/127 (14%)
Query: 41 ELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDD 100
E++ K L+N + Q + +V + +V + S ++++ D+ + +S+D
Sbjct: 301 EISEKAKLENST------QAEEGFDVPDCKKTIVNDSRESCVEENDDKITQASQSQESED 354
Query: 101 DFDMSRYSSSGYSSAEQINQDLNIQLLKDGYRLDEIPDDEDL--DLIPPKSVNPTCMCCQ 158
S SS YSS E + + + +E D E+ +P ++ P C+ CQ
Sbjct: 355 YSQPSTSSSIIYSSQEDVKE----------FEREETQDKEESVESSLPLNAIEP-CVICQ 403
Query: 159 ATSSTAC 165
C
Sbjct: 404 GRPKNGC 410
>gi|89993689 mouse double minute 2 homolog isoform MDM2 [Homo
sapiens]
Length = 497
Score = 28.9 bits (63), Expect = 2.2
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 19/127 (14%)
Query: 41 ELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSDD 100
E++ K L+N + Q + +V + +V + S ++++ D+ + +S+D
Sbjct: 346 EISEKAKLENST------QAEEGFDVPDCKKTIVNDSRESCVEENDDKITQASQSQESED 399
Query: 101 DFDMSRYSSSGYSSAEQINQDLNIQLLKDGYRLDEIPDDEDL--DLIPPKSVNPTCMCCQ 158
S SS YSS E + + + +E D E+ +P ++ P C+ CQ
Sbjct: 400 YSQPSTSSSIIYSSQEDVKE----------FEREETQDKEESVESSLPLNAIEP-CVICQ 448
Query: 159 ATSSTAC 165
C
Sbjct: 449 GRPKNGC 455
>gi|169172183 PREDICTED: similar to hCG19534 [Homo sapiens]
Length = 425
Score = 28.9 bits (63), Expect = 2.2
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 75 PNKGYSSLDQS--PDEKPLVALDTDSDDDFDMSRYSSSGYSSAEQIN--QDLNIQLLKDG 130
P K +S LD + D+K L +TD +D DMS +S E IN QD + K+
Sbjct: 76 PEKSFS-LDSTIDADQKVLRIQNTDDNDKNDMSFSQNSASGKHEHINLTQDFQSSICKES 134
Query: 131 Y-------RLDEIPDDED 141
+ D IP+ E+
Sbjct: 135 LMDLSLLNKWDSIPNTEE 152
>gi|169170925 PREDICTED: similar to hCG19534 [Homo sapiens]
Length = 425
Score = 28.9 bits (63), Expect = 2.2
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 75 PNKGYSSLDQS--PDEKPLVALDTDSDDDFDMSRYSSSGYSSAEQIN--QDLNIQLLKDG 130
P K +S LD + D+K L +TD +D DMS +S E IN QD + K+
Sbjct: 76 PEKSFS-LDSTIDADQKVLRIQNTDDNDKNDMSFSQNSASGKHEHINLTQDFQSSICKES 134
Query: 131 Y-------RLDEIPDDED 141
+ D IP+ E+
Sbjct: 135 LMDLSLLNKWDSIPNTEE 152
>gi|239508729 PREDICTED: similar to hCG19534 [Homo sapiens]
Length = 425
Score = 28.9 bits (63), Expect = 2.2
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 75 PNKGYSSLDQS--PDEKPLVALDTDSDDDFDMSRYSSSGYSSAEQIN--QDLNIQLLKDG 130
P K +S LD + D+K L +TD +D DMS +S E IN QD + K+
Sbjct: 76 PEKSFS-LDSTIDADQKVLRIQNTDDNDKNDMSFSQNSASGKHEHINLTQDFQSSICKES 134
Query: 131 Y-------RLDEIPDDED 141
+ D IP+ E+
Sbjct: 135 LMDLSLLNKWDSIPNTEE 152
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 28.9 bits (63), Expect = 2.2
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 40 RELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVALDTDSD 99
R+LA+K +L + KKN M ++ K D PL + +D D
Sbjct: 1315 RDLAKKEALSGAGSSKRRKARAKKNKAMKSIKVKEEIKS--------DSSPLPSEKSDED 1366
Query: 100 DDFDMSRYSSSGYSSAEQIN-QDLNIQLLKDGYRLDEIPDDEDLD 143
DD +S S G +++ + D + + G + + E+LD
Sbjct: 1367 DD-KLSESKSDGRERSKKSSVSDAPVHITASGEPVPISEESEELD 1410
>gi|226495417 coiled-coil domain containing 102A [Homo sapiens]
Length = 550
Score = 28.1 bits (61), Expect = 3.7
Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 19 PLDPAAASISDGDCDAREE-KQREL 42
PL PA A ++DGD ++REE + REL
Sbjct: 56 PLPPAPALLADGDWESREELRLREL 80
>gi|44888833 PDZ domain containing 6 [Homo sapiens]
Length = 942
Score = 28.1 bits (61), Expect = 3.7
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 85 SPDEKPLVALDTDSDDDFDMS-RYSSSG-YSSAEQINQDLNIQLL----KDGYRLD-EIP 137
S DE P + D+D+D R S SG YSSA DL + L K+G E+
Sbjct: 12 SSDELPGDPSSQEEDEDYDFEDRVSDSGSYSSASSDYDDLEPEWLDSVQKNGELFYLELS 71
Query: 138 DDEDLDLIP 146
+DE+ L+P
Sbjct: 72 EDEEESLLP 80
>gi|90903231 huntingtin [Homo sapiens]
Length = 3144
Score = 27.7 bits (60), Expect = 4.8
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 68 ARTRLVVPNKGYSSLDQSPDEKPLVALDT 96
A T V N S L+Q P KPL ALDT
Sbjct: 2515 AMTVPVAGNPAVSCLEQQPRNKPLKALDT 2543
>gi|34996489 pleckstrin homology domain interacting protein [Homo
sapiens]
Length = 1821
Score = 27.7 bits (60), Expect = 4.8
Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 16/147 (10%)
Query: 24 AASISDGDCDAREEKQRELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVPNKGYSSL- 82
A S SD + ++ ++KQ+++ ++ N P++ + KK + RL V + L
Sbjct: 877 AESSSDEEEESEKQKQKQIKKEKKKVNEEKDGPISPKKKKPKERKQKRLAVGELTENGLT 936
Query: 83 -----------DQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSAEQINQDLNIQLLKDGY 131
D P P V D+ R Y + N+ +I K +
Sbjct: 937 LEEWLPSTWITDTIPRRCPFV---PQMGDEVYYFRQGHEAYVEMARKNKIYSINPKKQPW 993
Query: 132 RLDEIPDDEDLDLIPPK-SVNPTCMCC 157
E+ + E + ++ K V +CC
Sbjct: 994 HKMELREQELMKIVGIKYEVGLPTLCC 1020
>gi|33350928 disabled homolog 1 [Homo sapiens]
Length = 555
Score = 27.7 bits (60), Expect = 4.8
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 19 PLDPAAASISDGDC---DAREEKQRELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVP 75
PL P A D + +K R+ K + K+ M P +K + + L
Sbjct: 383 PLTPLATVPGTSDSTRSSPQTDKPRQKMGKETFKDFQMAQPPPVPSRKPD---QPSLTCT 439
Query: 76 NKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSS 114
++ +SS K VA DTD DDFD+S+ + + +S
Sbjct: 440 SEAFSSYFN----KVGVAQDTDDCDDFDISQLNLTPVTS 474
>gi|14277685 protocadherin gamma subfamily C, 5 isoform 2 precursor
[Homo sapiens]
Length = 878
Score = 27.7 bits (60), Expect = 4.8
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 97 DSDDDFDMSRYSSSGYSSAEQINQDLNIQLLKDGYRLDEIPDDEDLD 143
DS D D+ + S Y+ + + LN++ LKDG E+ ++ LD
Sbjct: 155 DSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLEQQLD 201
>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
Length = 327
Score = 27.7 bits (60), Expect = 4.8
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 15/102 (14%)
Query: 19 PLDPAAASISDGDCDAREEKQRELARKGSLKNGSMGSP---VNQQPKKNNVMARTRLVVP 75
PL+ + S S DC + R+ G+ + G P + QP + + A++R V
Sbjct: 35 PLELSPRSESSSDCSSPASPGRDCLETGTPRPGGASGPGLDSHLQPGQLSAPAQSRTV-- 92
Query: 76 NKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSAEQ 117
+ D D KPL A + YSSSG +A +
Sbjct: 93 TSSFLIRDILADCKPLAA----------CAPYSSSGQPAAPE 124
>gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precursor
[Homo sapiens]
Length = 944
Score = 27.7 bits (60), Expect = 4.8
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 97 DSDDDFDMSRYSSSGYSSAEQINQDLNIQLLKDGYRLDEIPDDEDLD 143
DS D D+ + S Y+ + + LN++ LKDG E+ ++ LD
Sbjct: 155 DSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLEQQLD 201
>gi|195976782 Paf1/RNA polymerase II complex component [Homo
sapiens]
Length = 710
Score = 27.7 bits (60), Expect = 4.8
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 27/128 (21%)
Query: 18 QPLDPAAASISDGDCD----AREEKQRELARKGSLKNGSMGSPVNQQPKKNNVMARTRLV 73
QP + + SD D + + + K++ ARK K G+M N+ +
Sbjct: 88 QPAASSDSETSDSDDEWTFGSNKNKKKGKARKIE-KKGTMKKQANKTASSGS-------- 138
Query: 74 VPNKGYSSLDQSPDEKPLVALDTDSDDDFDMSRYSSSGYSSAEQINQDLNIQLLKDGYRL 133
+K S+ +P+E + SD D + S SS SS+E + DGY
Sbjct: 139 -SDKDSSAESSAPEEGEV------SDSDSNSSSSSSDSDSSSED-------EEFHDGYGE 184
Query: 134 DEIPDDED 141
D + D+ED
Sbjct: 185 DLMGDEED 192
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.128 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,899,237
Number of Sequences: 37866
Number of extensions: 304999
Number of successful extensions: 859
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 831
Number of HSP's gapped (non-prelim): 42
length of query: 168
length of database: 18,247,518
effective HSP length: 95
effective length of query: 73
effective length of database: 14,650,248
effective search space: 1069468104
effective search space used: 1069468104
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.