Guide to the Human Genome
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Name: RAD21L1 Sequence: fasta or formatted (556aa) NCBI GI: 222136644
Description:

RAD21-like 1

Referenced in:

DNases, Recombination, and DNA Repair

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         31           3
 C cysteine            1.3          7           1
 D aspartate           5.2         29           2
 E glutamate          10.3         57           3
 F phenylalanine       4.5         25           2
 G glycine             4.5         25           2
 H histidine           2.5         14           1
 I isoleucine          6.7         37           2
 K lysine              6.7         37           2
 L leucine            11.5         64           3
 M methionine          4.1         23           2
 N asparagine          5.8         32           1
 P proline             3.8         21           2
 Q glutamine           4.1         23           2
 R arginine            4.1         23           2
 S serine              8.8         49           2
 T threonine           4.3         24           1
 V valine              3.6         20           2
 W tryptophan          0.9          5           1
 Y tyrosine            1.8         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAD21-like 1 
RAD21                 0.367   RAD21 homolog 
REC8                  0.022   REC8 homolog 
REC8                  0.022   REC8 homolog 
CCDC19                0.014   nasopharyngeal epithelium specific protein 1 
GTF2I                 0.007   general transcription factor II, i isoform 1 
WRN                   0.007   Werner syndrome protein 
LOC652522             0.007   PREDICTED: similar to Werner syndrome ATP-dependent...
AKAP9                 0.007   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.007   A-kinase anchor protein 9 isoform 3 
EHBP1                 0.006   EH domain binding protein 1 isoform 3 
EHBP1                 0.006   EH domain binding protein 1 isoform 3 
EHBP1                 0.006   EH domain binding protein 1 isoform 2 
EHBP1                 0.006   EH domain binding protein 1 isoform 1 
CALD1                 0.006   caldesmon 1 isoform 1 
NEUROD1               0.006   neurogenic differentiation 1 
CYTSA                 0.005   cytospin A 
CYTSA                 0.005   cytospin A 
LOC100131908          0.005   PREDICTED: similar to forkhead box O6 
GTF2I                 0.005   general transcription factor II, i isoform 3 
STIM2                 0.005   stromal interaction molecule 2 
NIN                   0.005   ninein isoform 4 
NIN                   0.005   ninein isoform 5 
NIN                   0.005   ninein isoform 1 
NIN                   0.005   ninein isoform 2 
GOLGA6B               0.005   golgi autoantigen, golgin subfamily a, 6B 
GOLGB1                0.005   golgi autoantigen, golgin subfamily b, macrogolgin ...
SLMAP                 0.005   sarcolemma associated protein 
WDR87                 0.005   NYD-SP11 protein 
LOC283767             0.005   golgi autoantigen, golgin subfamily a-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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